Strain Fitness in Pantoea sp. MT58 around IAI47_08200

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,732,692	+		IAI47_08195	0.78	+1.6
1,732,692	+		IAI47_08195	0.78	+0.7
1,732,692	+		IAI47_08195	0.78	-1.1
1,732,692	+		IAI47_08195	0.78	+0.9
1,732,693	-		IAI47_08195	0.78	-0.4
1,732,693	-		IAI47_08195	0.78	+1.7
1,732,693	-		IAI47_08195	0.78	+1.2
1,732,693	-		IAI47_08195	0.78	+0.2
1,732,713	+		IAI47_08195	0.79	+0.6
1,732,713	+		IAI47_08195	0.79	-0.1
1,732,714	-		IAI47_08195	0.79	+0.9
1,732,718	+		IAI47_08195	0.79	-0.4
1,732,718	+		IAI47_08195	0.79	-1.4
1,732,718	+		IAI47_08195	0.79	+0.4
1,732,718	+		IAI47_08195	0.79	+1.6
1,732,718	+		IAI47_08195	0.79	-1.6
1,732,719	-		IAI47_08195	0.79	-1.4
1,732,719	-		IAI47_08195	0.79	-1.7
1,732,719	-		IAI47_08195	0.79	+0.6
1,732,719	-		IAI47_08195	0.79	+0.6
1,732,719	-		IAI47_08195	0.79	+0.2
1,732,821	+		IAI47_08195	0.81	+1.8
1,732,821	+		IAI47_08195	0.81	+2.7
1,732,821	+		IAI47_08195	0.81	-0.6
1,732,822	-		IAI47_08195	0.81	-1.4
1,732,863	+		IAI47_08195	0.82	-0.1
1,732,864	-		IAI47_08195	0.82	+1.5
1,732,864	-		IAI47_08195	0.82	-0.4
1,733,046	+		IAI47_08195	0.87	-0.1
1,733,046	+		IAI47_08195	0.87	-0.4
1,733,047	-		IAI47_08195	0.87	+0.6
1,733,047	-		IAI47_08195	0.87	+0.4
1,733,047	-		IAI47_08195	0.87	+0.6
1,733,081	-		IAI47_08195	0.88	+0.2
1,733,183	+				-0.3
1,733,183	+				-1.5
1,733,312	-				-0.7
1,733,441	+				-1.2
1,733,441	+				+0.7
1,733,441	+				-0.3
1,733,441	+				+0.4
1,733,442	-				-0.8
1,733,442	-				-0.4
1,733,442	-				-0.8
1,733,442	-				+0.6
1,733,442	-				-1.2
1,733,445	+				+1.1
1,733,445	+				-0.3
1,733,445	+				-0.3
1,733,445	+				+1.2
1,733,446	-				-0.5
1,733,446	-				-0.4
1,733,446	-				+0.2
1,733,446	-				-1.1
1,733,536	+				+1.0
1,733,536	+				+0.5
1,733,537	-				-0.3
1,733,553	+				-2.2
1,733,554	-				+0.9
1,733,577	+				-3.5
1,733,577	+				-1.3
1,733,577	+				+0.8
1,733,578	-				-1.6
1,733,605	+				-0.7
1,733,606	-				-1.1
1,733,606	-				-0.8
1,733,612	+				-0.4
1,733,612	+				-0.3
1,733,613	-				-0.4
1,733,653	+				+0.7
1,733,663	+				+0.3
1,733,663	+				-1.1
1,733,664	-				-1.5
1,733,664	-				-0.1
1,733,664	-				-0.5
1,733,664	-				+0.5
1,733,704	-				+1.5
1,733,762	+		IAI47_08200	0.27	-1.8
1,733,804	+		IAI47_08200	0.40	-1.7
1,733,804	+		IAI47_08200	0.40	-2.0
1,733,804	+		IAI47_08200	0.40	+0.6
1,733,804	+		IAI47_08200	0.40	-0.8
1,733,804	+		IAI47_08200	0.40	-1.3
1,733,805	-		IAI47_08200	0.41	-0.3
1,733,964	-				+1.2
1,733,984	+				+0.3
1,733,991	+				-0.3
1,733,991	+				-1.0
1,733,991	+				+1.1
1,733,992	-				+0.7
1,733,992	-				-0.4
1,733,994	+				-0.0
1,733,995	-				+1.2
1,734,016	+				+0.2
1,734,016	+				-0.7
1,734,016	+				+0.2
1,734,017	-				+1.0
1,734,017	-				-0.3
1,734,017	-				-1.6
1,734,017	-				+1.3
1,734,017	-				-0.5
1,734,020	+				+0.0
1,734,020	+				+0.9
1,734,021	-				+2.2
1,734,021	-				-0.3
1,734,021	-				-1.3
1,734,021	-				-0.3
1,734,021	-				-2.3
1,734,048	+				+1.1
1,734,049	-				-2.2
1,734,049	-				-1.5
1,734,051	-				-0.8
1,734,051	-				+2.0
1,734,077	+				+1.2
1,734,078	-				-1.1
1,734,078	-				-0.5
1,734,078	-				-1.1
1,734,080	-				+0.6
1,734,111	+				+0.4
1,734,111	+				+1.2
1,734,111	+				-1.1
1,734,111	+				-1.4
1,734,111	+				+2.2
1,734,111	+				+0.2
1,734,111	+				-0.4
1,734,111	+				-1.8
1,734,111	+				-1.2
1,734,111	+				+0.7
1,734,112	-				+1.0
1,734,112	-				+0.4
1,734,112	-				-0.3
1,734,112	-				+0.2
1,734,112	-				-0.1
1,734,173	+		IAI47_08205	0.11	+0.6
1,734,225	-		IAI47_08205	0.15	-1.2
1,734,374	+		IAI47_08205	0.25	-0.6
1,734,375	-		IAI47_08205	0.25	+0.7
1,734,419	+		IAI47_08205	0.28	+1.2
1,734,420	-		IAI47_08205	0.28	+0.4
1,734,422	+		IAI47_08205	0.28	+0.5
1,734,422	+		IAI47_08205	0.28	+1.0
1,734,422	+		IAI47_08205	0.28	+0.4
1,734,422	+		IAI47_08205	0.28	-0.8
1,734,422	+		IAI47_08205	0.28	-1.8
1,734,422	+		IAI47_08205	0.28	+1.2
1,734,423	-		IAI47_08205	0.28	-1.2
1,734,423	-		IAI47_08205	0.28	+1.5
1,734,423	-		IAI47_08205	0.28	-1.0
1,734,423	-		IAI47_08205	0.28	+0.0
1,734,423	-		IAI47_08205	0.28	-0.8
1,734,423	-		IAI47_08205	0.28	-0.4
1,734,423	-		IAI47_08205	0.28	+1.2
1,734,423	-		IAI47_08205	0.28	+1.2
1,734,423	-		IAI47_08205	0.28	-0.4
1,734,426	+		IAI47_08205	0.28	+1.2
1,734,426	+		IAI47_08205	0.28	-1.4
1,734,426	+		IAI47_08205	0.28	-1.4
1,734,426	+		IAI47_08205	0.28	-0.5
1,734,426	+		IAI47_08205	0.28	-1.0
1,734,426	+		IAI47_08205	0.28	-1.3
1,734,426	+		IAI47_08205	0.28	-1.6
1,734,427	-		IAI47_08205	0.28	+0.3
1,734,427	-		IAI47_08205	0.28	-3.0
1,734,427	-		IAI47_08205	0.28	-1.6
1,734,427	-		IAI47_08205	0.28	-1.6
1,734,427	-		IAI47_08205	0.28	-1.2
1,734,427	-		IAI47_08205	0.28	-1.3
1,734,427	-		IAI47_08205	0.28	-0.4
1,734,427	-		IAI47_08205	0.28	-1.1
1,734,480	-		IAI47_08205	0.32	+3.6
1,734,486	+		IAI47_08205	0.32	+0.8
1,734,528	+		IAI47_08205	0.35	-2.8
1,734,528	+		IAI47_08205	0.35	-2.2
1,734,528	+		IAI47_08205	0.35	-1.1
1,734,530	+		IAI47_08205	0.35	+0.2
1,734,530	+		IAI47_08205	0.35	-0.8
1,734,530	+		IAI47_08205	0.35	-1.4
1,734,530	+		IAI47_08205	0.35	+0.9
1,734,530	+		IAI47_08205	0.35	-0.6
1,734,530	+		IAI47_08205	0.35	-1.3
1,734,530	+		IAI47_08205	0.35	-1.0
1,734,531	-		IAI47_08205	0.35	+1.2
1,734,531	-		IAI47_08205	0.35	+0.2
1,734,531	-		IAI47_08205	0.35	-1.3
1,734,627	-		IAI47_08205	0.42	-1.1
1,734,751	-		IAI47_08205	0.50	-1.6
1,734,767	+		IAI47_08205	0.51	-0.4
1,734,768	-		IAI47_08205	0.51	+0.7
1,734,768	-		IAI47_08205	0.51	-1.4
1,734,768	-		IAI47_08205	0.51	-1.2
1,734,768	-		IAI47_08205	0.51	-2.4
1,734,768	-		IAI47_08205	0.51	+0.8
1,734,830	+		IAI47_08205	0.55	-0.4
1,734,830	+		IAI47_08205	0.55	+0.5
1,734,892	-		IAI47_08205	0.59	+2.4
1,734,926	+		IAI47_08205	0.62	+0.6
1,734,932	+		IAI47_08205	0.62	-0.0
1,734,933	-		IAI47_08205	0.62	+1.6
1,734,933	-		IAI47_08205	0.62	-0.4
1,734,933	-		IAI47_08205	0.62	-2.0
1,734,933	-		IAI47_08205	0.62	+1.2
1,734,950	+		IAI47_08205	0.63	+0.5
1,734,965	+		IAI47_08205	0.64	-1.3
1,734,966	-		IAI47_08205	0.64	-0.1