Strain Fitness in Pantoea sp. MT58 around IAI47_08040

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,697,101	+		IAI47_08030	0.85	+1.9
1,697,101	+		IAI47_08030	0.85	+1.6
1,697,102	-		IAI47_08030	0.85	+1.2
1,697,102	-		IAI47_08030	0.85	+1.2
1,697,190	+		IAI47_08030	0.90	+1.8
1,697,190	+		IAI47_08030	0.90	+2.2
1,697,193	+		IAI47_08030	0.90	+0.3
1,697,193	+		IAI47_08030	0.90	+1.4
1,697,193	+		IAI47_08030	0.90	+0.3
1,697,193	+		IAI47_08030	0.90	+0.7
1,697,193	+		IAI47_08030	0.90	-0.4
1,697,193	+		IAI47_08030	0.90	+0.2
1,697,193	+		IAI47_08030	0.90	-0.8
1,697,194	-		IAI47_08030	0.90	-0.3
1,697,194	-		IAI47_08030	0.90	+0.2
1,697,194	-		IAI47_08030	0.90	+1.7
1,697,195	+				+0.2
1,697,195	+				-0.1
1,697,195	+				+0.8
1,697,195	+				+0.8
1,697,196	-				+0.8
1,697,196	-				+0.9
1,697,205	+				+1.8
1,697,205	+				+1.6
1,697,206	-				+2.6
1,697,206	-				+0.4
1,697,206	-				+1.4
1,697,207	+				-0.9
1,697,207	+				+1.3
1,697,207	+				+0.2
1,697,207	+				+1.3
1,697,208	-				+0.7
1,697,208	-				-0.6
1,697,208	-				+0.1
1,697,208	-				-0.5
1,697,208	-				+0.6
1,697,208	-				+0.9
1,697,208	-				-1.0
1,697,251	+				+1.6
1,697,276	-				+0.5
1,697,276	-				+1.4
1,697,276	-				+1.2
1,697,308	+				+4.1
1,697,309	-				+0.2
1,697,309	-				-0.4
1,697,355	+				+0.9
1,697,356	-				+2.7
1,697,387	+				+0.6
1,697,388	-				+1.5
1,697,399	+				+0.4
1,697,435	+				+0.5
1,697,435	+				+1.6
1,697,435	+				+3.1
1,697,436	-				+0.2
1,697,440	-				-1.0
1,697,466	+				+1.8
1,697,467	-				-0.2
1,697,467	-				+0.6
1,697,467	-				-0.5
1,697,469	+				+1.2
1,697,469	+				+1.5
1,697,469	+				+1.9
1,697,469	+				+1.2
1,697,469	+				+0.2
1,697,469	+				+2.9
1,697,469	+				+0.8
1,697,469	+				+1.9
1,697,469	+				+0.0
1,697,469	+				+0.8
1,697,470	-				-1.2
1,697,470	-				-1.8
1,697,470	-				+1.0
1,697,470	-				+1.9
1,697,470	-				-0.0
1,697,470	-				+0.8
1,697,470	-				+0.2
1,697,470	-				+0.5
1,697,518	+				-0.1
1,697,518	+				+1.0
1,697,518	+				+0.9
1,697,519	-				+0.5
1,697,550	+				-0.6
1,697,550	+				+1.0
1,697,551	-				+1.1
1,697,584	+				-0.1
1,697,585	-				+0.5
1,697,585	-				+0.3
1,697,585	-				-0.1
1,697,636	+		IAI47_08035	0.12	+0.2
1,697,636	+		IAI47_08035	0.12	+0.6
1,697,725	-		IAI47_08035	0.40	+0.5
1,697,745	+		IAI47_08035	0.47	+0.8
1,697,893	-				+1.8
1,697,893	-				-0.2
1,697,916	+				-0.2
1,697,916	+				-0.2
1,697,940	+				+1.2
1,697,968	+				-0.3
1,697,968	+				+0.5
1,697,968	+				+1.7
1,697,968	+				+0.3
1,697,968	+				-0.7
1,697,968	+				+0.8
1,697,969	-				-0.8
1,697,969	-				+3.4
1,697,969	-				+0.3
1,697,969	-				+1.2
1,697,969	-				+0.5
1,697,972	+				-0.0
1,697,972	+				-0.8
1,697,972	+				-0.5
1,697,972	+				+0.9
1,697,973	-				-0.5
1,697,973	-				+0.5
1,698,008	+				+0.1
1,698,008	+				+0.3
1,698,009	-				+0.2
1,698,009	-				-1.4
1,698,068	+				+0.2
1,698,069	-				+0.4
1,698,112	+		IAI47_08040	0.25	+1.8
1,698,112	+		IAI47_08040	0.25	-2.6
1,698,113	-		IAI47_08040	0.25	+1.7
1,698,113	-		IAI47_08040	0.25	-1.8
1,698,217	+		IAI47_08040	0.69	+1.3
1,698,223	-		IAI47_08040	0.72	+1.6
1,698,223	-		IAI47_08040	0.72	+1.6
1,698,250	+		IAI47_08040	0.83	-0.4
1,698,287	+				+0.2
1,698,287	+				+1.3
1,698,288	-				-0.9
1,698,288	-				+0.8
1,698,288	-				+0.2
1,698,318	+				+1.6
1,698,318	+				-0.8
1,698,319	-				+1.7
1,698,319	-				-0.7
1,698,320	+				+0.5
1,698,320	+				-0.7
1,698,320	+				-2.2
1,698,321	-				+1.4
1,698,321	-				-0.6
1,698,321	-				+0.3
1,698,321	-				-2.6
1,698,453	+				-0.4
1,698,453	+				-0.6
1,698,454	-				-1.7
1,698,454	-				+0.2
1,698,454	-				+0.6
1,698,454	-				-1.8
1,698,468	+				+0.4
1,698,468	+				-0.5
1,698,469	-				-0.8
1,698,510	+				+0.2
1,698,511	-				-0.2
1,698,511	-				-1.6
1,698,520	+				-2.2
1,698,521	-				+0.2
1,698,521	-				-0.4
1,698,576	-				-2.2
1,698,576	-				+0.5
1,698,638	+				-0.8
1,698,654	+				+0.3
1,698,654	+				+1.1
1,698,654	+				+0.5
1,698,675	+				+0.5
1,698,678	+				+0.3
1,698,679	-				-2.2
1,698,688	+				-2.3
1,698,688	+				+1.8
1,698,700	+				-0.6
1,698,873	+		IAI47_08045	0.31	+1.3
1,698,883	-		IAI47_08045	0.33	-2.2
1,698,885	-		IAI47_08045	0.33	+0.1
1,698,918	-		IAI47_08045	0.41	+0.2
1,699,061	-		IAI47_08045	0.72	+0.2
1,699,126	-		IAI47_08045	0.86	-0.8
1,699,183	-				-0.5
1,699,226	-				-0.8
1,699,257	+				-0.2
1,699,263	+				-2.4
1,699,269	+				-0.7
1,699,270	-				-1.2
1,699,270	-				+0.6
1,699,272	+		IAI47_08050	0.10	-0.8
1,699,274	+		IAI47_08050	0.10	-0.1
1,699,281	-		IAI47_08050	0.11	-1.1
1,699,283	+		IAI47_08050	0.12	-0.5
1,699,284	-		IAI47_08050	0.12	-1.0
1,699,286	-		IAI47_08050	0.12	+1.8