Strain Fitness in Pantoea sp. MT58 around IAI47_05035

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,062,312	+		IAI47_05030	0.65	-2.3
1,062,312	+		IAI47_05030	0.65	-0.7
1,062,312	+		IAI47_05030	0.65	+0.3
1,062,313	-		IAI47_05030	0.65	-1.0
1,062,313	-		IAI47_05030	0.65	-0.1
1,062,313	-		IAI47_05030	0.65	+1.1
1,062,353	+		IAI47_05030	0.66	+1.2
1,062,353	+		IAI47_05030	0.66	-0.3
1,062,353	+		IAI47_05030	0.66	-0.0
1,062,354	-		IAI47_05030	0.67	+1.1
1,062,354	-		IAI47_05030	0.67	+0.4
1,062,354	-		IAI47_05030	0.67	+0.1
1,062,354	-		IAI47_05030	0.67	-1.2
1,062,354	-		IAI47_05030	0.67	-2.0
1,062,354	-		IAI47_05030	0.67	+0.7
1,062,354	-		IAI47_05030	0.67	+0.3
1,062,396	-		IAI47_05030	0.68	-1.5
1,062,396	-		IAI47_05030	0.68	+0.3
1,062,487	+		IAI47_05030	0.72	+0.3
1,062,488	-		IAI47_05030	0.72	-0.0
1,062,567	+		IAI47_05030	0.76	-0.7
1,062,567	+		IAI47_05030	0.76	-1.8
1,062,567	+		IAI47_05030	0.76	-0.1
1,062,567	+		IAI47_05030	0.76	-0.6
1,062,567	+		IAI47_05030	0.76	-2.0
1,062,568	-		IAI47_05030	0.76	+0.3
1,062,568	-		IAI47_05030	0.76	+0.4
1,062,568	-		IAI47_05030	0.76	-0.3
1,062,568	-		IAI47_05030	0.76	-0.7
1,062,568	-		IAI47_05030	0.76	+1.3
1,062,606	+		IAI47_05030	0.77	+2.9
1,062,606	+		IAI47_05030	0.77	-1.1
1,062,606	+		IAI47_05030	0.77	-0.3
1,062,606	+		IAI47_05030	0.77	-0.9
1,062,606	+		IAI47_05030	0.77	+0.1
1,062,606	+		IAI47_05030	0.77	+0.9
1,062,606	+		IAI47_05030	0.77	-1.3
1,062,607	-		IAI47_05030	0.77	+0.8
1,062,607	-		IAI47_05030	0.77	-1.3
1,062,607	-		IAI47_05030	0.77	+1.7
1,062,646	+		IAI47_05030	0.79	+0.8
1,062,646	+		IAI47_05030	0.79	-0.7
1,062,646	+		IAI47_05030	0.79	+1.4
1,062,646	+		IAI47_05030	0.79	-0.5
1,062,696	+		IAI47_05030	0.81	-1.7
1,062,707	+		IAI47_05030	0.82	-0.1
1,062,834	+		IAI47_05030	0.87	-0.3
1,062,864	+		IAI47_05030	0.88	-1.7
1,062,864	+		IAI47_05030	0.88	+0.3
1,062,864	+		IAI47_05030	0.88	-0.6
1,062,864	+		IAI47_05030	0.88	+1.2
1,062,864	+		IAI47_05030	0.88	-0.4
1,062,864	+		IAI47_05030	0.88	+0.8
1,062,864	+		IAI47_05030	0.88	+0.3
1,062,865	-		IAI47_05030	0.88	+1.3
1,062,865	-		IAI47_05030	0.88	+0.3
1,062,865	-		IAI47_05030	0.88	+1.3
1,062,938	-				-0.1
1,062,940	+				+0.5
1,062,940	+				-1.3
1,062,940	+				+0.4
1,062,940	+				-1.5
1,062,940	+				-0.3
1,062,940	+				-0.1
1,062,941	-				+1.3
1,062,941	-				-0.1
1,062,941	-				-0.4
1,062,941	-				+0.3
1,063,073	+				+1.4
1,063,074	-				+1.2
1,063,074	-				-0.1
1,063,087	-				+0.6
1,063,087	-				-0.4
1,063,157	-				+3.3
1,063,157	-				+1.3
1,063,160	+				-0.7
1,063,160	+				-0.0
1,063,160	+				+1.1
1,063,160	+				-0.5
1,063,160	+				-0.7
1,063,160	+				+1.2
1,063,160	+				+1.7
1,063,160	+				-0.2
1,063,160	+				+3.0
1,063,160	+				+0.3
1,063,161	-				-0.0
1,063,161	-				-0.1
1,063,161	-				-0.6
1,063,161	-				+0.1
1,063,161	-				+2.6
1,063,161	-				+0.1
1,063,161	-				+0.7
1,063,240	+				+1.2
1,063,240	+				-0.9
1,063,242	+				-1.5
1,063,243	-				-0.5
1,063,260	-				+0.9
1,063,335	-				+0.3
1,063,376	+		IAI47_05035	0.15	-1.3
1,063,380	+		IAI47_05035	0.16	-2.0
1,063,381	-		IAI47_05035	0.16	-0.7
1,063,381	-		IAI47_05035	0.16	-1.3
1,063,381	-		IAI47_05035	0.16	-0.7
1,063,381	-		IAI47_05035	0.16	-2.7
1,063,381	-		IAI47_05035	0.16	-2.0
1,063,381	-		IAI47_05035	0.16	+0.3
1,063,381	-		IAI47_05035	0.16	-2.9
1,063,381	-				-1.3
1,063,461	+				-2.0
1,063,461	+		IAI47_05035	0.35	-2.0
1,063,531	+		IAI47_05035	0.51	-1.3
1,063,629	+		IAI47_05035	0.74	-1.7
1,063,702	-				-1.7
1,063,733	+				-0.1
1,063,761	+				+1.7
1,063,762	-				-1.0
1,063,762	-				-0.7
1,063,786	+				+0.1
1,063,810	-				-0.4
1,063,828	+				+0.8
1,063,828	+				-2.3
1,063,828	+				-0.3
1,063,828	+				-0.8
1,063,829	-				-0.5
1,063,829	-				+1.0
1,063,829	-				+0.7
1,063,829	-				+0.3
1,063,829	-				-0.6
1,063,834	-				+0.5
1,063,834	-				+1.9
1,063,858	-				+0.3
1,063,881	+				+1.3
1,063,881	+				-0.2
1,063,881	+				+1.2
1,063,882	-				+0.8
1,063,882	-				-0.4
1,063,882	-				+0.3
1,063,882	-				+1.2
1,063,906	+				+0.3
1,063,906	+				+1.6
1,063,907	-				-1.7
1,063,925	+				+0.3
1,063,925	+				+0.1
1,063,925	+				-3.0
1,063,926	-				+1.3
1,063,926	-				-2.3
1,063,926	-				-1.0
1,063,926	-				+0.3
1,063,928	+				+0.5
1,063,928	+				-1.9
1,063,928	+				+3.3
1,063,928	+				-0.3
1,063,928	+				-0.4
1,063,928	+				-0.5
1,063,928	+				-2.5
1,063,929	-				-2.0
1,063,929	-				-2.7
1,063,929	-				-0.5
1,063,929	-				+0.3
1,063,996	+				+0.4
1,064,091	+		IAI47_05040	0.14	-0.7
1,064,091	+		IAI47_05040	0.14	-0.3
1,064,091	+		IAI47_05040	0.14	+0.9
1,064,091	+		IAI47_05040	0.14	-0.2
1,064,092	-		IAI47_05040	0.14	+0.8
1,064,092	-		IAI47_05040	0.14	+0.4
1,064,092	-		IAI47_05040	0.14	-2.3
1,064,098	-		IAI47_05040	0.14	+1.3
1,064,098	-		IAI47_05040	0.14	+0.3
1,064,222	+		IAI47_05040	0.25	-0.7
1,064,222	+		IAI47_05040	0.25	+0.3
1,064,222	+		IAI47_05040	0.25	+1.4
1,064,222	+		IAI47_05040	0.25	-0.9
1,064,222	+		IAI47_05040	0.25	+0.5
1,064,223	-		IAI47_05040	0.25	-1.7
1,064,223	-		IAI47_05040	0.25	+1.0
1,064,223	-		IAI47_05040	0.25	-0.7
1,064,266	-		IAI47_05040	0.29	+0.3
1,064,266	-		IAI47_05040	0.29	-0.6
1,064,266	-		IAI47_05040	0.29	+1.3
1,064,330	+		IAI47_05040	0.34	-0.5
1,064,331	-		IAI47_05040	0.34	-0.7
1,064,366	+		IAI47_05040	0.37	-1.7
1,064,387	+		IAI47_05040	0.39	+0.8
1,064,388	-		IAI47_05040	0.39	-0.3
1,064,450	+		IAI47_05040	0.45	-1.3
1,064,450	+		IAI47_05040	0.45	+2.0
1,064,450	+		IAI47_05040	0.45	-0.2
1,064,451	-		IAI47_05040	0.45	-1.5
1,064,451	-		IAI47_05040	0.45	+0.3
1,064,451	-		IAI47_05040	0.45	-0.3
1,064,501	+		IAI47_05040	0.49	-0.7
1,064,501	+		IAI47_05040	0.49	+0.0
1,064,566	+		IAI47_05040	0.54	-0.3
1,064,567	-		IAI47_05040	0.55	+1.3
1,064,615	+		IAI47_05040	0.59	-0.7
1,064,615	+		IAI47_05040	0.59	+0.9
1,064,615	+		IAI47_05040	0.59	+0.5
1,064,616	-		IAI47_05040	0.59	-0.7
1,064,616	-		IAI47_05040	0.59	-0.4
1,064,616	-		IAI47_05040	0.59	-0.0
1,064,616	-		IAI47_05040	0.59	+0.3
1,064,702	+		IAI47_05040	0.66	-1.3
1,064,703	-		IAI47_05040	0.66	+0.1
1,064,733	+		IAI47_05040	0.69	-0.1
1,064,733	+		IAI47_05040	0.69	+2.0
1,064,733	+		IAI47_05040	0.69	+1.0
1,064,733	+		IAI47_05040	0.69	-0.7
1,064,733	+		IAI47_05040	0.69	-2.2
1,064,734	-		IAI47_05040	0.69	-1.3
1,064,734	-		IAI47_05040	0.69	-0.7
1,064,734	-		IAI47_05040	0.69	-2.3