Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02765 and IAI47_02770 are separated by 62 nucleotides IAI47_02770 and IAI47_02775 are separated by 294 nucleotides IAI47_02775 and IAI47_02780 are separated by 13 nucleotides IAI47_02780 and IAI47_02785 are separated by 2 nucleotides IAI47_02785 and IAI47_02790 are separated by 127 nucleotides
IAI47_02765: IAI47_02765 - metalloprotease PmbA, at 573,624 to 574,976
_02765
IAI47_02770: IAI47_02770 - cytochrome b562, at 575,039 to 575,425
_02770
IAI47_02775: IAI47_02775 - glycine dehydrogenase, at 575,720 to 576,055
_02775
IAI47_02780: IAI47_02780 - hypothetical protein, at 576,069 to 576,425
_02780
IAI47_02785: IAI47_02785 - DUF4312 family protein, at 576,428 to 576,727
_02785
IAI47_02790: IAI47_02790 - DUF4311 domain-containing protein, at 576,855 to 577,631
_02790
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 574.735 kb on + strand, within IAI47_02765 at 574.735 kb on + strand, within IAI47_02765 at 574.775 kb on + strand, within IAI47_02765 at 574.785 kb on + strand, within IAI47_02765 at 574.785 kb on + strand, within IAI47_02765 at 574.785 kb on + strand, within IAI47_02765 at 574.786 kb on - strand, within IAI47_02765 at 574.786 kb on - strand, within IAI47_02765 at 574.786 kb on - strand, within IAI47_02765 at 574.826 kb on + strand, within IAI47_02765 at 574.854 kb on - strand at 574.854 kb on - strand at 574.854 kb on - strand at 574.908 kb on - strand at 574.922 kb on + strand at 574.922 kb on + strand at 574.922 kb on + strand at 574.926 kb on - strand at 574.926 kb on - strand at 574.945 kb on + strand at 574.945 kb on + strand at 574.945 kb on + strand at 574.946 kb on - strand at 574.946 kb on - strand at 574.964 kb on - strand at 574.974 kb on + strand at 574.974 kb on + strand at 574.974 kb on + strand at 574.974 kb on + strand at 574.975 kb on - strand at 574.975 kb on - strand at 574.975 kb on - strand at 574.975 kb on - strand at 575.034 kb on + strand at 575.035 kb on - strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.044 kb on + strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.045 kb on - strand at 575.099 kb on + strand, within IAI47_02770 at 575.100 kb on - strand, within IAI47_02770 at 575.122 kb on + strand, within IAI47_02770 at 575.122 kb on + strand, within IAI47_02770 at 575.243 kb on - strand, within IAI47_02770 at 575.266 kb on + strand, within IAI47_02770 at 575.266 kb on + strand, within IAI47_02770 at 575.267 kb on - strand, within IAI47_02770 at 575.285 kb on + strand, within IAI47_02770 at 575.286 kb on - strand, within IAI47_02770 at 575.401 kb on + strand at 575.401 kb on + strand at 575.402 kb on - strand at 575.402 kb on - strand at 575.410 kb on + strand at 575.410 kb on + strand at 575.411 kb on - strand at 575.475 kb on - strand at 575.475 kb on - strand at 575.477 kb on + strand at 575.533 kb on + strand at 575.533 kb on + strand at 575.533 kb on + strand at 575.533 kb on + strand at 575.534 kb on - strand at 575.534 kb on - strand at 575.540 kb on + strand at 575.561 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.630 kb on + strand at 575.631 kb on - strand at 575.631 kb on - strand at 575.631 kb on - strand at 575.631 kb on - strand at 575.675 kb on - strand at 575.713 kb on + strand at 575.713 kb on + strand at 575.713 kb on + strand at 575.713 kb on + strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.714 kb on - strand at 575.729 kb on - strand at 575.744 kb on + strand at 575.744 kb on + strand at 575.744 kb on + strand at 575.744 kb on + strand at 575.745 kb on - strand at 575.745 kb on - strand at 575.745 kb on - strand at 575.745 kb on - strand at 575.787 kb on + strand, within IAI47_02775 at 575.787 kb on + strand, within IAI47_02775 at 575.788 kb on - strand, within IAI47_02775 at 575.810 kb on + strand, within IAI47_02775 at 575.810 kb on + strand, within IAI47_02775 at 575.811 kb on - strand, within IAI47_02775 at 575.811 kb on - strand, within IAI47_02775 at 575.938 kb on + strand, within IAI47_02775 at 575.938 kb on + strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 576.028 kb on + strand at 576.029 kb on - strand at 576.029 kb on - strand at 576.053 kb on + strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.074 kb on - strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.097 kb on + strand at 576.101 kb on + strand at 576.101 kb on + strand at 576.101 kb on + strand at 576.102 kb on - strand at 576.102 kb on - strand at 576.120 kb on - strand, within IAI47_02780 at 576.120 kb on - strand, within IAI47_02780 at 576.176 kb on + strand, within IAI47_02780 at 576.177 kb on - strand, within IAI47_02780 at 576.177 kb on - strand, within IAI47_02780 at 576.222 kb on - strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.279 kb on + strand, within IAI47_02780 at 576.279 kb on + strand, within IAI47_02780 at 576.280 kb on - strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.329 kb on + strand, within IAI47_02780 at 576.329 kb on + strand, within IAI47_02780 at 576.330 kb on - strand, within IAI47_02780 at 576.347 kb on - strand, within IAI47_02780 at 576.380 kb on - strand, within IAI47_02780 at 576.380 kb on - strand, within IAI47_02780 at 576.427 kb on + strand at 576.428 kb on - strand at 576.428 kb on - strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.446 kb on - strand at 576.446 kb on - strand at 576.475 kb on + strand, within IAI47_02785 at 576.712 kb on + strand at 576.713 kb on - strand at 576.725 kb on + strand at 576.726 kb on - strand at 576.726 kb on - strand at 576.741 kb on + strand at 576.742 kb on - strand at 576.793 kb on - strand at 576.829 kb on + strand at 576.829 kb on + strand at 576.830 kb on - strand at 576.846 kb on + strand at 576.846 kb on + strand at 576.847 kb on - strand at 576.847 kb on - strand at 576.847 kb on - strand at 576.848 kb on - strand at 576.974 kb on + strand, within IAI47_02790
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 574,735 + IAI47_02765 0.82 +0.3 574,735 + IAI47_02765 0.82 -1.7 574,775 + IAI47_02765 0.85 +0.3 574,785 + IAI47_02765 0.86 -1.1 574,785 + IAI47_02765 0.86 -1.1 574,785 + IAI47_02765 0.86 -0.6 574,786 - IAI47_02765 0.86 +0.3 574,786 - IAI47_02765 0.86 -0.5 574,786 - IAI47_02765 0.86 -1.1 574,826 + IAI47_02765 0.89 -1.1 574,854 - -1.0 574,854 - -1.3 574,854 - -1.0 574,908 - -1.8 574,922 + -1.4 574,922 + -1.5 574,922 + -1.3 574,926 - -0.3 574,926 - -1.7 574,945 + -2.3 574,945 + -1.7 574,945 + -0.5 574,946 - -1.3 574,946 - -0.8 574,964 - +1.2 574,974 + -0.1 574,974 + +0.3 574,974 + +0.8 574,974 + -1.1 574,975 - +0.2 574,975 - -0.2 574,975 - +0.6 574,975 - +1.1 575,034 + -0.7 575,035 - -0.1 575,044 + -0.3 575,044 + -1.4 575,044 + +1.6 575,044 + -1.3 575,044 + -0.3 575,044 + -0.7 575,044 + -1.5 575,045 - +0.6 575,045 - +0.9 575,045 - +0.9 575,045 - +0.9 575,045 - -0.2 575,045 - +0.1 575,045 - +0.3 575,045 - +0.8 575,045 - +0.0 575,045 - -0.7 575,045 - +0.9 575,045 - +1.9 575,099 + IAI47_02770 0.16 -0.6 575,100 - IAI47_02770 0.16 -0.3 575,122 + IAI47_02770 0.21 +1.0 575,122 + IAI47_02770 0.21 +0.5 575,243 - IAI47_02770 0.53 -2.5 575,266 + IAI47_02770 0.59 +0.0 575,266 + IAI47_02770 0.59 -0.5 575,267 - IAI47_02770 0.59 -0.7 575,285 + IAI47_02770 0.64 -0.6 575,286 - IAI47_02770 0.64 -1.3 575,401 + +0.4 575,401 + +0.7 575,402 - +1.0 575,402 - +0.0 575,410 + -0.6 575,410 + -0.7 575,411 - +1.3 575,475 - -0.5 575,475 - -0.3 575,477 + -1.2 575,533 + +0.3 575,533 + -1.5 575,533 + -0.9 575,533 + +1.2 575,534 - -1.3 575,534 - -2.3 575,540 + -0.1 575,561 + -0.8 575,630 + -0.3 575,630 + +1.3 575,630 + -1.3 575,630 + -0.3 575,630 + -1.2 575,630 + -0.3 575,631 - +0.0 575,631 - +0.5 575,631 - -0.7 575,631 - +1.0 575,675 - -0.8 575,713 + -1.1 575,713 + +0.1 575,713 + +0.6 575,713 + -1.7 575,714 - +0.1 575,714 - +0.6 575,714 - +0.5 575,714 - -0.1 575,714 - +0.7 575,729 - -0.1 575,744 + -2.1 575,744 + -1.2 575,744 + +1.3 575,744 + -0.7 575,745 - -0.4 575,745 - -0.6 575,745 - +0.3 575,745 - -0.1 575,787 + IAI47_02775 0.20 -0.5 575,787 + IAI47_02775 0.20 +1.7 575,788 - IAI47_02775 0.20 -2.1 575,810 + IAI47_02775 0.27 -0.7 575,810 + IAI47_02775 0.27 -0.2 575,811 - IAI47_02775 0.27 +0.1 575,811 - IAI47_02775 0.27 -0.6 575,938 + IAI47_02775 0.65 -1.3 575,938 + IAI47_02775 0.65 -1.5 575,939 - IAI47_02775 0.65 +2.0 575,939 - IAI47_02775 0.65 -0.1 575,939 - IAI47_02775 0.65 +1.9 576,028 + +0.3 576,029 - -0.1 576,029 - -0.8 576,053 + +0.6 576,054 - -0.4 576,054 - +0.6 576,054 - -0.7 576,054 - +0.7 576,073 + -1.1 576,073 + +0.4 576,073 + -0.9 576,073 + -0.7 576,073 + +0.3 576,073 + -2.1 576,074 - -3.2 576,079 + +0.1 576,079 + +0.9 576,079 + -0.5 576,079 + -1.1 576,080 - +0.1 576,080 - +0.5 576,080 - +1.0 576,080 - +0.4 576,080 - +0.9 576,080 - +2.7 576,097 + -1.7 576,101 + +0.6 576,101 + -0.1 576,101 + -0.4 576,102 - -0.3 576,102 - +0.8 576,120 - IAI47_02780 0.14 +0.3 576,120 - IAI47_02780 0.14 +0.4 576,176 + IAI47_02780 0.30 -0.2 576,177 - IAI47_02780 0.30 -0.7 576,177 - IAI47_02780 0.30 +0.0 576,222 - IAI47_02780 0.43 +2.6 576,273 + IAI47_02780 0.57 -0.5 576,273 + IAI47_02780 0.57 +0.3 576,273 + IAI47_02780 0.57 -0.1 576,273 + IAI47_02780 0.57 +0.3 576,273 + IAI47_02780 0.57 +0.2 576,274 - IAI47_02780 0.57 +0.7 576,274 - IAI47_02780 0.57 -1.1 576,274 - IAI47_02780 0.57 -0.7 576,274 - IAI47_02780 0.57 -0.3 576,274 - IAI47_02780 0.57 -1.7 576,274 - IAI47_02780 0.57 +1.4 576,274 - IAI47_02780 0.57 -0.7 576,274 - IAI47_02780 0.57 +0.5 576,274 - IAI47_02780 0.57 +0.3 576,274 - IAI47_02780 0.57 -0.1 576,274 - IAI47_02780 0.57 +0.6 576,279 + IAI47_02780 0.59 +0.9 576,279 + IAI47_02780 0.59 +0.1 576,280 - IAI47_02780 0.59 -1.1 576,296 + IAI47_02780 0.64 -1.4 576,296 + IAI47_02780 0.64 -0.6 576,296 + IAI47_02780 0.64 +1.4 576,296 + IAI47_02780 0.64 +0.6 576,296 + IAI47_02780 0.64 +0.0 576,297 - IAI47_02780 0.64 -2.0 576,297 - IAI47_02780 0.64 +0.9 576,297 - IAI47_02780 0.64 +1.4 576,297 - IAI47_02780 0.64 +1.7 576,329 + IAI47_02780 0.73 +2.3 576,329 + IAI47_02780 0.73 -0.9 576,330 - IAI47_02780 0.73 +0.3 576,347 - IAI47_02780 0.78 +1.4 576,380 - IAI47_02780 0.87 +0.9 576,380 - IAI47_02780 0.87 -0.3 576,427 + -1.2 576,428 - +0.9 576,428 - +0.6 576,440 + +0.0 576,440 + +0.3 576,440 + +1.0 576,440 + -1.2 576,440 + +1.0 576,440 + +0.9 576,440 + -0.6 576,441 - +0.7 576,441 - -0.1 576,441 - -1.3 576,441 - +0.9 576,441 - -0.6 576,441 - -3.1 576,446 - -1.5 576,446 - -1.0 576,475 + IAI47_02785 0.16 +0.5 576,712 + +0.3 576,713 - -0.1 576,725 + -1.7 576,726 - +0.7 576,726 - +0.3 576,741 + +1.1 576,742 - +1.5 576,793 - -1.3 576,829 + -0.1 576,829 + +1.1 576,830 - +0.3 576,846 + -0.7 576,846 + +0.7 576,847 - -1.7 576,847 - +3.1 576,847 - -0.6 576,848 - +1.0 576,974 + IAI47_02790 0.15 -0.7
Or see this region's nucleotide sequence