Strain Fitness in Pantoea sp. MT58 around IAI47_02590

Experiment: Ying_sugar7 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_02585 and IAI47_02590 are separated by 103 nucleotidesIAI47_02590 and IAI47_02595 are separated by 71 nucleotides IAI47_02585: IAI47_02585 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 535,275 to 536,225 _02585 IAI47_02590: IAI47_02590 - RNA chaperone Hfq, at 536,329 to 536,643 _02590 IAI47_02595: IAI47_02595 - GTPase HflX, at 536,715 to 537,995 _02595 Position (kb) 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 535.368 kb on - strandat 535.376 kb on - strand, within IAI47_02585at 535.410 kb on - strand, within IAI47_02585at 535.413 kb on + strand, within IAI47_02585at 535.459 kb on + strand, within IAI47_02585at 535.460 kb on - strand, within IAI47_02585at 535.605 kb on + strand, within IAI47_02585at 535.606 kb on - strand, within IAI47_02585at 535.857 kb on + strand, within IAI47_02585at 536.043 kb on + strand, within IAI47_02585at 536.043 kb on + strand, within IAI47_02585at 536.044 kb on - strand, within IAI47_02585at 536.122 kb on + strand, within IAI47_02585at 536.122 kb on + strand, within IAI47_02585at 536.123 kb on - strand, within IAI47_02585at 536.189 kb on + strandat 536.190 kb on - strandat 536.190 kb on - strandat 536.207 kb on + strandat 536.207 kb on + strandat 536.208 kb on - strandat 536.231 kb on + strandat 536.269 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.283 kb on + strandat 536.284 kb on - strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.290 kb on + strandat 536.293 kb on + strandat 536.293 kb on + strandat 536.312 kb on + strandat 536.312 kb on + strandat 536.312 kb on + strandat 536.312 kb on + strandat 536.313 kb on - strandat 536.325 kb on + strandat 536.348 kb on + strandat 536.415 kb on + strand, within IAI47_02590at 536.418 kb on + strand, within IAI47_02590at 536.477 kb on + strand, within IAI47_02590at 536.491 kb on + strand, within IAI47_02590at 536.491 kb on + strand, within IAI47_02590at 536.491 kb on + strand, within IAI47_02590at 536.491 kb on + strand, within IAI47_02590at 536.493 kb on + strand, within IAI47_02590at 536.494 kb on - strand, within IAI47_02590at 536.541 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.547 kb on + strand, within IAI47_02590at 536.548 kb on - strand, within IAI47_02590at 536.575 kb on + strand, within IAI47_02590at 536.575 kb on + strand, within IAI47_02590at 536.575 kb on + strand, within IAI47_02590at 536.575 kb on + strand, within IAI47_02590at 536.632 kb on - strandat 536.641 kb on + strandat 536.654 kb on + strandat 536.654 kb on + strandat 536.654 kb on + strandat 536.654 kb on + strandat 536.654 kb on + strandat 536.696 kb on + strandat 536.696 kb on + strandat 536.696 kb on + strandat 536.697 kb on - strandat 536.697 kb on - strandat 536.697 kb on - strandat 536.709 kb on + strandat 536.711 kb on + strandat 536.711 kb on + strandat 536.711 kb on + strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.712 kb on - strandat 536.755 kb on + strandat 536.755 kb on + strandat 536.755 kb on + strandat 536.755 kb on + strandat 536.785 kb on + strandat 536.794 kb on + strandat 536.794 kb on + strandat 536.861 kb on + strand, within IAI47_02595at 536.862 kb on - strand, within IAI47_02595at 536.862 kb on - strand, within IAI47_02595at 536.880 kb on + strand, within IAI47_02595at 536.880 kb on + strand, within IAI47_02595at 536.880 kb on + strand, within IAI47_02595at 536.881 kb on - strand, within IAI47_02595at 536.881 kb on - strand, within IAI47_02595at 536.881 kb on - strand, within IAI47_02595at 536.881 kb on - strand, within IAI47_02595at 536.923 kb on + strand, within IAI47_02595at 536.950 kb on + strand, within IAI47_02595at 536.951 kb on - strand, within IAI47_02595at 536.966 kb on + strand, within IAI47_02595at 536.967 kb on - strand, within IAI47_02595at 537.016 kb on + strand, within IAI47_02595at 537.016 kb on + strand, within IAI47_02595at 537.016 kb on + strand, within IAI47_02595at 537.016 kb on + strand, within IAI47_02595at 537.017 kb on - strand, within IAI47_02595at 537.031 kb on + strand, within IAI47_02595at 537.041 kb on + strand, within IAI47_02595at 537.042 kb on - strand, within IAI47_02595at 537.062 kb on + strand, within IAI47_02595at 537.063 kb on - strand, within IAI47_02595at 537.063 kb on - strand, within IAI47_02595at 537.063 kb on - strand, within IAI47_02595at 537.074 kb on + strand, within IAI47_02595at 537.100 kb on + strand, within IAI47_02595at 537.100 kb on + strand, within IAI47_02595at 537.100 kb on + strand, within IAI47_02595at 537.100 kb on + strand, within IAI47_02595at 537.101 kb on - strand, within IAI47_02595at 537.101 kb on - strand, within IAI47_02595at 537.101 kb on - strand, within IAI47_02595at 537.124 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.193 kb on + strand, within IAI47_02595at 537.194 kb on - strand, within IAI47_02595at 537.194 kb on - strand, within IAI47_02595at 537.327 kb on + strand, within IAI47_02595at 537.327 kb on + strand, within IAI47_02595at 537.327 kb on + strand, within IAI47_02595at 537.328 kb on - strand, within IAI47_02595at 537.328 kb on - strand, within IAI47_02595at 537.328 kb on - strand, within IAI47_02595at 537.328 kb on - strand, within IAI47_02595at 537.329 kb on + strand, within IAI47_02595at 537.329 kb on + strand, within IAI47_02595at 537.330 kb on - strand, within IAI47_02595at 537.330 kb on - strand, within IAI47_02595at 537.479 kb on + strand, within IAI47_02595at 537.479 kb on + strand, within IAI47_02595at 537.515 kb on + strand, within IAI47_02595at 537.553 kb on + strand, within IAI47_02595at 537.553 kb on + strand, within IAI47_02595at 537.553 kb on + strand, within IAI47_02595at 537.553 kb on + strand, within IAI47_02595at 537.553 kb on + strand, within IAI47_02595at 537.554 kb on - strand, within IAI47_02595at 537.554 kb on - strand, within IAI47_02595at 537.616 kb on + strand, within IAI47_02595at 537.616 kb on + strand, within IAI47_02595at 537.617 kb on - strand, within IAI47_02595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
remove
535,368 - -0.7
535,376 - IAI47_02585 0.11 -0.4
535,410 - IAI47_02585 0.14 +1.6
535,413 + IAI47_02585 0.15 -0.7
535,459 + IAI47_02585 0.19 -1.5
535,460 - IAI47_02585 0.19 -0.2
535,605 + IAI47_02585 0.35 -0.7
535,606 - IAI47_02585 0.35 +1.8
535,857 + IAI47_02585 0.61 -1.3
536,043 + IAI47_02585 0.81 -1.3
536,043 + IAI47_02585 0.81 +0.6
536,044 - IAI47_02585 0.81 +0.8
536,122 + IAI47_02585 0.89 +0.6
536,122 + IAI47_02585 0.89 -1.1
536,123 - IAI47_02585 0.89 +0.6
536,189 + -0.7
536,190 - -0.7
536,190 - -0.7
536,207 + -0.3
536,207 + -0.7
536,208 - -1.7
536,231 + -0.0
536,269 + +2.7
536,283 + +0.5
536,283 + -0.7
536,283 + -0.7
536,283 + -1.1
536,283 + -0.2
536,283 + +0.7
536,283 + -0.7
536,283 + -1.3
536,283 + +1.3
536,283 + +1.3
536,284 - -1.3
536,290 + +0.3
536,290 + -3.2
536,290 + +1.8
536,290 + +0.0
536,290 + +0.7
536,290 + +0.8
536,290 + +0.5
536,290 + -1.7
536,290 + -0.2
536,290 + -0.3
536,293 + -0.5
536,293 + +1.3
536,312 + -1.8
536,312 + -2.1
536,312 + +0.3
536,312 + -1.3
536,313 - -0.7
536,325 + -2.9
536,348 + -1.7
536,415 + IAI47_02590 0.27 -2.1
536,418 + IAI47_02590 0.28 -1.7
536,477 + IAI47_02590 0.47 -2.1
536,491 + IAI47_02590 0.51 -1.3
536,491 + IAI47_02590 0.51 -1.7
536,491 + IAI47_02590 0.51 -1.3
536,491 + IAI47_02590 0.51 +0.3
536,493 + IAI47_02590 0.52 -0.7
536,494 - IAI47_02590 0.52 -2.3
536,541 + IAI47_02590 0.67 -1.3
536,547 + IAI47_02590 0.69 +1.1
536,547 + IAI47_02590 0.69 -1.3
536,547 + IAI47_02590 0.69 -0.7
536,547 + IAI47_02590 0.69 -1.0
536,547 + IAI47_02590 0.69 -3.6
536,547 + IAI47_02590 0.69 -1.9
536,547 + IAI47_02590 0.69 +0.3
536,547 + IAI47_02590 0.69 +1.2
536,548 - IAI47_02590 0.70 -2.8
536,575 + IAI47_02590 0.78 +0.8
536,575 + IAI47_02590 0.78 -0.9
536,575 + IAI47_02590 0.78 -0.3
536,575 + IAI47_02590 0.78 -0.5
536,632 - -0.7
536,641 + -1.1
536,654 + +1.3
536,654 + -0.3
536,654 + -0.2
536,654 + -0.2
536,654 + -0.2
536,696 + -2.9
536,696 + +0.5
536,696 + -2.5
536,697 - -1.3
536,697 - +1.5
536,697 - -1.1
536,709 + -0.2
536,711 + +0.7
536,711 + +0.4
536,711 + +0.4
536,712 - +0.3
536,712 - -1.7
536,712 - +0.3
536,712 - +0.8
536,712 - +2.3
536,712 - +0.4
536,712 - +0.3
536,712 - +1.3
536,712 - -0.3
536,755 + +0.7
536,755 + -0.2
536,755 + -1.0
536,755 + -0.3
536,785 + +0.8
536,794 + -0.2
536,794 + -1.3
536,861 + IAI47_02595 0.11 -0.5
536,862 - IAI47_02595 0.11 +0.4
536,862 - IAI47_02595 0.11 +1.7
536,880 + IAI47_02595 0.13 +0.9
536,880 + IAI47_02595 0.13 +0.9
536,880 + IAI47_02595 0.13 +1.1
536,881 - IAI47_02595 0.13 -0.7
536,881 - IAI47_02595 0.13 +0.6
536,881 - IAI47_02595 0.13 -0.7
536,881 - IAI47_02595 0.13 -0.0
536,923 + IAI47_02595 0.16 -0.7
536,950 + IAI47_02595 0.18 +0.5
536,951 - IAI47_02595 0.18 +0.5
536,966 + IAI47_02595 0.20 -0.3
536,967 - IAI47_02595 0.20 -0.3
537,016 + IAI47_02595 0.23 +0.7
537,016 + IAI47_02595 0.23 -1.5
537,016 + IAI47_02595 0.23 +0.0
537,016 + IAI47_02595 0.23 +0.3
537,017 - IAI47_02595 0.24 -0.3
537,031 + IAI47_02595 0.25 +0.5
537,041 + IAI47_02595 0.25 +0.9
537,042 - IAI47_02595 0.26 +0.8
537,062 + IAI47_02595 0.27 -1.1
537,063 - IAI47_02595 0.27 +1.3
537,063 - IAI47_02595 0.27 -0.6
537,063 - IAI47_02595 0.27 -0.6
537,074 + IAI47_02595 0.28 +1.3
537,100 + IAI47_02595 0.30 +0.3
537,100 + IAI47_02595 0.30 -0.6
537,100 + IAI47_02595 0.30 +1.1
537,100 + IAI47_02595 0.30 +0.7
537,101 - IAI47_02595 0.30 +1.1
537,101 - IAI47_02595 0.30 -0.2
537,101 - IAI47_02595 0.30 -1.3
537,124 + IAI47_02595 0.32 -1.2
537,193 + IAI47_02595 0.37 -1.5
537,193 + IAI47_02595 0.37 -1.7
537,193 + IAI47_02595 0.37 -0.7
537,193 + IAI47_02595 0.37 -1.3
537,193 + IAI47_02595 0.37 -0.1
537,193 + IAI47_02595 0.37 -0.2
537,193 + IAI47_02595 0.37 +1.7
537,194 - IAI47_02595 0.37 +1.3
537,194 - IAI47_02595 0.37 -1.1
537,327 + IAI47_02595 0.48 -0.6
537,327 + IAI47_02595 0.48 +0.3
537,327 + IAI47_02595 0.48 +0.3
537,328 - IAI47_02595 0.48 +2.3
537,328 - IAI47_02595 0.48 +0.1
537,328 - IAI47_02595 0.48 -1.5
537,328 - IAI47_02595 0.48 +0.3
537,329 + IAI47_02595 0.48 -1.5
537,329 + IAI47_02595 0.48 -1.3
537,330 - IAI47_02595 0.48 +0.4
537,330 - IAI47_02595 0.48 +0.5
537,479 + IAI47_02595 0.60 -2.6
537,479 + IAI47_02595 0.60 -0.1
537,515 + IAI47_02595 0.62 -0.8
537,553 + IAI47_02595 0.65 +0.7
537,553 + IAI47_02595 0.65 -0.2
537,553 + IAI47_02595 0.65 +2.0
537,553 + IAI47_02595 0.65 -1.3
537,553 + IAI47_02595 0.65 -0.0
537,554 - IAI47_02595 0.65 -0.2
537,554 - IAI47_02595 0.65 -1.1
537,616 + IAI47_02595 0.70 -1.0
537,616 + IAI47_02595 0.70 -1.3
537,617 - IAI47_02595 0.70 +0.9

Or see this region's nucleotide sequence