Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00785 and IAI47_00790 are separated by 161 nucleotides IAI47_00790 and IAI47_00795 are separated by 28 nucleotides IAI47_00795 and IAI47_00800 are separated by 120 nucleotides IAI47_00800 and IAI47_00805 are separated by 98 nucleotides
IAI47_00785: IAI47_00785 - sulfate ABC transporter substrate-binding protein, at 166,212 to 167,201
_00785
IAI47_00790: IAI47_00790 - CDP-diacylglycerol diphosphatase, at 167,363 to 168,136
_00790
IAI47_00795: IAI47_00795 - triose-phosphate isomerase, at 168,165 to 168,932
_00795
IAI47_00800: IAI47_00800 - YiiQ family protein, at 169,053 to 169,643
_00800
IAI47_00805: IAI47_00805 - DUF805 domain-containing protein, at 169,742 to 170,176
_00805
Position (kb) 168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.178 kb on + strand at 167.178 kb on + strand at 167.178 kb on + strand at 167.178 kb on + strand at 167.178 kb on + strand at 167.178 kb on + strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.179 kb on - strand at 167.199 kb on + strand at 167.199 kb on + strand at 167.200 kb on - strand at 167.200 kb on - strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.203 kb on - strand at 167.340 kb on + strand at 167.340 kb on + strand at 167.362 kb on + strand at 167.362 kb on + strand at 167.362 kb on + strand at 167.363 kb on - strand at 167.363 kb on - strand at 167.363 kb on - strand at 167.427 kb on + strand at 167.557 kb on + strand, within IAI47_00790 at 167.558 kb on + strand, within IAI47_00790 at 167.559 kb on - strand, within IAI47_00790 at 167.559 kb on - strand, within IAI47_00790 at 167.559 kb on - strand, within IAI47_00790 at 167.559 kb on - strand, within IAI47_00790 at 167.575 kb on + strand, within IAI47_00790 at 167.575 kb on + strand, within IAI47_00790 at 167.575 kb on + strand, within IAI47_00790 at 167.575 kb on + strand, within IAI47_00790 at 167.575 kb on + strand, within IAI47_00790 at 167.576 kb on - strand, within IAI47_00790 at 167.576 kb on - strand, within IAI47_00790 at 167.576 kb on - strand at 167.594 kb on + strand, within IAI47_00790 at 167.594 kb on + strand, within IAI47_00790 at 167.595 kb on - strand, within IAI47_00790 at 167.595 kb on - strand, within IAI47_00790 at 167.657 kb on - strand, within IAI47_00790 at 167.657 kb on - strand, within IAI47_00790 at 167.657 kb on - strand, within IAI47_00790 at 167.666 kb on + strand, within IAI47_00790 at 167.666 kb on + strand, within IAI47_00790 at 167.666 kb on + strand, within IAI47_00790 at 167.667 kb on - strand, within IAI47_00790 at 167.762 kb on + strand, within IAI47_00790 at 167.762 kb on + strand, within IAI47_00790 at 167.788 kb on + strand, within IAI47_00790 at 167.788 kb on + strand, within IAI47_00790 at 167.789 kb on - strand, within IAI47_00790 at 167.789 kb on - strand, within IAI47_00790 at 167.789 kb on - strand, within IAI47_00790 at 167.789 kb on - strand, within IAI47_00790 at 167.872 kb on + strand, within IAI47_00790 at 167.873 kb on - strand, within IAI47_00790 at 167.873 kb on - strand, within IAI47_00790 at 167.873 kb on - strand, within IAI47_00790 at 167.873 kb on - strand, within IAI47_00790 at 167.873 kb on - strand, within IAI47_00790 at 167.873 kb on - strand, within IAI47_00790 at 167.881 kb on + strand, within IAI47_00790 at 167.882 kb on - strand, within IAI47_00790 at 167.990 kb on + strand, within IAI47_00790 at 167.990 kb on + strand, within IAI47_00790 at 167.990 kb on + strand, within IAI47_00790 at 167.990 kb on + strand, within IAI47_00790 at 167.990 kb on + strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 167.991 kb on - strand, within IAI47_00790 at 168.043 kb on - strand, within IAI47_00790 at 168.043 kb on - strand, within IAI47_00790 at 168.120 kb on + strand at 168.134 kb on + strand at 168.134 kb on + strand at 168.159 kb on + strand at 168.160 kb on - strand at 168.160 kb on - strand at 168.166 kb on + strand at 168.955 kb on - strand at 168.955 kb on - strand at 168.955 kb on - strand at 168.955 kb on - strand at 169.000 kb on - strand at 169.000 kb on - strand at 169.000 kb on - strand at 169.000 kb on - strand at 169.001 kb on + strand at 169.001 kb on + strand at 169.001 kb on + strand at 169.002 kb on - strand at 169.002 kb on - strand at 169.002 kb on - strand at 169.014 kb on + strand at 169.159 kb on + strand, within IAI47_00800 at 169.160 kb on - strand, within IAI47_00800 at 169.160 kb on - strand, within IAI47_00800 at 169.185 kb on + strand, within IAI47_00800 at 169.185 kb on + strand, within IAI47_00800 at 169.185 kb on + strand, within IAI47_00800 at 169.186 kb on - strand, within IAI47_00800 at 169.186 kb on - strand, within IAI47_00800 at 169.221 kb on + strand, within IAI47_00800 at 169.230 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.258 kb on + strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.259 kb on - strand, within IAI47_00800 at 169.362 kb on - strand, within IAI47_00800 at 169.369 kb on + strand, within IAI47_00800 at 169.369 kb on + strand, within IAI47_00800 at 169.370 kb on - strand, within IAI47_00800 at 169.370 kb on - strand, within IAI47_00800 at 169.370 kb on - strand, within IAI47_00800 at 169.370 kb on - strand, within IAI47_00800 at 169.427 kb on + strand, within IAI47_00800 at 169.427 kb on + strand, within IAI47_00800 at 169.428 kb on - strand, within IAI47_00800 at 169.475 kb on + strand, within IAI47_00800 at 169.475 kb on + strand, within IAI47_00800 at 169.475 kb on + strand, within IAI47_00800 at 169.477 kb on + strand, within IAI47_00800 at 169.477 kb on + strand, within IAI47_00800 at 169.478 kb on - strand, within IAI47_00800 at 169.478 kb on - strand, within IAI47_00800 at 169.505 kb on + strand, within IAI47_00800 at 169.505 kb on + strand, within IAI47_00800 at 169.505 kb on + strand, within IAI47_00800 at 169.505 kb on + strand, within IAI47_00800 at 169.506 kb on - strand, within IAI47_00800 at 169.506 kb on - strand, within IAI47_00800 at 169.506 kb on - strand, within IAI47_00800 at 169.506 kb on - strand, within IAI47_00800 at 169.534 kb on + strand, within IAI47_00800 at 169.535 kb on - strand, within IAI47_00800 at 169.615 kb on - strand at 169.679 kb on + strand at 169.736 kb on + strand at 169.736 kb on + strand at 169.736 kb on + strand at 169.737 kb on - strand at 169.737 kb on - strand at 169.737 kb on - strand at 169.737 kb on - strand at 169.737 kb on - strand at 169.749 kb on + strand at 169.749 kb on + strand at 169.750 kb on - strand at 169.750 kb on - strand at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.839 kb on + strand, within IAI47_00805 at 169.840 kb on - strand, within IAI47_00805 at 169.840 kb on - strand, within IAI47_00805 at 169.840 kb on - strand, within IAI47_00805 at 169.840 kb on - strand, within IAI47_00805 at 169.840 kb on - strand, within IAI47_00805 at 169.843 kb on + strand, within IAI47_00805 at 169.844 kb on - strand, within IAI47_00805 at 169.844 kb on - strand, within IAI47_00805 at 169.870 kb on + strand, within IAI47_00805 at 169.929 kb on + strand, within IAI47_00805 at 169.929 kb on + strand, within IAI47_00805 at 169.929 kb on + strand, within IAI47_00805 at 169.929 kb on + strand, within IAI47_00805 at 169.930 kb on - strand, within IAI47_00805 at 169.930 kb on - strand, within IAI47_00805 at 169.930 kb on - strand, within IAI47_00805 at 169.930 kb on - strand, within IAI47_00805
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 167,178 + -1.1 167,178 + -0.4 167,178 + -2.9 167,178 + -0.3 167,178 + -0.9 167,178 + +0.0 167,179 - -0.4 167,179 - -2.3 167,179 - +1.5 167,179 - -0.7 167,179 - -0.7 167,179 - -0.2 167,179 - -0.7 167,179 - +0.8 167,179 - +0.6 167,179 - +1.3 167,179 - +0.3 167,199 + +1.7 167,199 + -0.2 167,200 - -1.0 167,200 - +0.9 167,202 + +0.8 167,202 + -0.5 167,202 + -1.4 167,202 + -0.2 167,202 + +0.6 167,202 + +0.7 167,202 + -0.4 167,202 + -0.9 167,202 + -1.3 167,202 + -1.4 167,203 - +0.1 167,203 - -0.3 167,203 - +2.1 167,203 - +0.1 167,203 - +0.5 167,203 - +1.9 167,203 - -0.4 167,203 - +0.3 167,340 + -0.1 167,340 + +0.4 167,362 + +0.3 167,362 + +1.1 167,362 + -0.7 167,363 - +0.5 167,363 - +1.2 167,363 - +2.6 167,427 + +0.3 167,557 + IAI47_00790 0.25 -0.7 167,558 + IAI47_00790 0.25 +0.3 167,559 - IAI47_00790 0.25 +1.0 167,559 - IAI47_00790 0.25 -1.0 167,559 - IAI47_00790 0.25 -2.1 167,559 - IAI47_00790 0.25 -0.7 167,575 + IAI47_00790 0.27 -0.3 167,575 + IAI47_00790 0.27 -0.9 167,575 + IAI47_00790 0.27 -0.1 167,575 + IAI47_00790 0.27 -1.3 167,575 + IAI47_00790 0.27 -0.9 167,576 - IAI47_00790 0.28 +0.3 167,576 - IAI47_00790 0.28 +0.0 167,576 - +1.6 167,594 + IAI47_00790 0.30 +0.0 167,594 + IAI47_00790 0.30 -0.7 167,595 - IAI47_00790 0.30 -0.6 167,595 - IAI47_00790 0.30 +0.9 167,657 - IAI47_00790 0.38 +0.3 167,657 - IAI47_00790 0.38 +0.3 167,657 - IAI47_00790 0.38 +0.1 167,666 + IAI47_00790 0.39 +0.3 167,666 + IAI47_00790 0.39 -0.5 167,666 + IAI47_00790 0.39 -0.9 167,667 - IAI47_00790 0.39 +0.1 167,762 + IAI47_00790 0.52 +0.5 167,762 + IAI47_00790 0.52 +1.3 167,788 + IAI47_00790 0.55 -0.4 167,788 + IAI47_00790 0.55 +0.3 167,789 - IAI47_00790 0.55 +0.3 167,789 - IAI47_00790 0.55 +0.3 167,789 - IAI47_00790 0.55 -0.1 167,789 - IAI47_00790 0.55 +0.9 167,872 + IAI47_00790 0.66 -0.3 167,873 - IAI47_00790 0.66 +1.7 167,873 - IAI47_00790 0.66 +0.2 167,873 - IAI47_00790 0.66 +0.1 167,873 - IAI47_00790 0.66 +1.0 167,873 - IAI47_00790 0.66 +0.6 167,873 - IAI47_00790 0.66 +0.6 167,881 + IAI47_00790 0.67 -0.2 167,882 - IAI47_00790 0.67 +0.1 167,990 + IAI47_00790 0.81 +0.6 167,990 + IAI47_00790 0.81 -1.5 167,990 + IAI47_00790 0.81 -1.7 167,990 + IAI47_00790 0.81 -1.3 167,990 + IAI47_00790 0.81 +1.6 167,991 - IAI47_00790 0.81 -0.3 167,991 - IAI47_00790 0.81 +1.1 167,991 - IAI47_00790 0.81 +0.3 167,991 - IAI47_00790 0.81 -0.1 167,991 - IAI47_00790 0.81 -0.7 167,991 - IAI47_00790 0.81 +1.1 167,991 - IAI47_00790 0.81 -1.0 167,991 - IAI47_00790 0.81 +0.3 167,991 - IAI47_00790 0.81 +1.1 168,043 - IAI47_00790 0.88 +0.5 168,043 - IAI47_00790 0.88 -1.7 168,120 + -1.7 168,134 + +0.7 168,134 + -0.5 168,159 + -1.3 168,160 - +0.3 168,160 - -0.5 168,166 + -1.7 168,955 - +0.5 168,955 - +0.6 168,955 - -0.7 168,955 - +2.3 169,000 - +0.9 169,000 - -2.4 169,000 - +0.3 169,000 - +0.5 169,001 + +0.1 169,001 + +0.8 169,001 + -1.6 169,002 - -1.4 169,002 - -0.4 169,002 - -1.3 169,014 + -2.4 169,159 + IAI47_00800 0.18 -0.9 169,160 - IAI47_00800 0.18 -0.4 169,160 - IAI47_00800 0.18 +1.9 169,185 + IAI47_00800 0.22 +0.6 169,185 + IAI47_00800 0.22 -0.2 169,185 + IAI47_00800 0.22 -0.9 169,186 - IAI47_00800 0.23 -0.1 169,186 - IAI47_00800 0.23 -1.0 169,221 + IAI47_00800 0.28 +0.7 169,230 + IAI47_00800 0.30 +1.3 169,258 + IAI47_00800 0.35 -0.9 169,258 + IAI47_00800 0.35 -1.7 169,258 + IAI47_00800 0.35 +0.6 169,258 + IAI47_00800 0.35 -0.0 169,258 + IAI47_00800 0.35 +0.2 169,258 + IAI47_00800 0.35 -2.0 169,258 + IAI47_00800 0.35 +1.3 169,258 + IAI47_00800 0.35 -1.5 169,258 + IAI47_00800 0.35 -0.7 169,258 + IAI47_00800 0.35 +1.3 169,258 + IAI47_00800 0.35 -0.9 169,259 - IAI47_00800 0.35 -0.4 169,259 - IAI47_00800 0.35 -2.0 169,259 - IAI47_00800 0.35 +1.1 169,259 - IAI47_00800 0.35 +1.3 169,259 - IAI47_00800 0.35 -1.5 169,259 - IAI47_00800 0.35 +1.1 169,259 - IAI47_00800 0.35 +0.7 169,259 - IAI47_00800 0.35 +1.4 169,362 - IAI47_00800 0.52 -1.0 169,369 + IAI47_00800 0.53 +0.5 169,369 + IAI47_00800 0.53 -0.3 169,370 - IAI47_00800 0.54 -0.2 169,370 - IAI47_00800 0.54 -1.0 169,370 - IAI47_00800 0.54 -0.7 169,370 - IAI47_00800 0.54 -1.2 169,427 + IAI47_00800 0.63 -0.2 169,427 + IAI47_00800 0.63 +0.2 169,428 - IAI47_00800 0.63 -0.3 169,475 + IAI47_00800 0.71 -1.0 169,475 + IAI47_00800 0.71 -0.1 169,475 + IAI47_00800 0.71 -0.3 169,477 + IAI47_00800 0.72 +0.7 169,477 + IAI47_00800 0.72 +1.8 169,478 - IAI47_00800 0.72 +0.3 169,478 - IAI47_00800 0.72 +0.6 169,505 + IAI47_00800 0.76 -1.0 169,505 + IAI47_00800 0.76 +0.1 169,505 + IAI47_00800 0.76 -0.8 169,505 + IAI47_00800 0.76 +0.2 169,506 - IAI47_00800 0.77 +1.6 169,506 - IAI47_00800 0.77 +0.7 169,506 - IAI47_00800 0.77 +0.3 169,506 - IAI47_00800 0.77 -0.8 169,534 + IAI47_00800 0.81 -0.7 169,535 - IAI47_00800 0.82 -1.1 169,615 - -0.4 169,679 + -1.4 169,736 + -0.6 169,736 + +1.2 169,736 + -1.0 169,737 - -0.7 169,737 - -1.0 169,737 - -1.1 169,737 - -1.0 169,737 - -0.4 169,749 + +0.5 169,749 + -1.1 169,750 - -0.1 169,750 - -0.0 169,839 + IAI47_00805 0.22 -0.7 169,839 + IAI47_00805 0.22 +1.1 169,839 + IAI47_00805 0.22 +1.7 169,839 + IAI47_00805 0.22 +0.1 169,839 + IAI47_00805 0.22 +3.0 169,839 + IAI47_00805 0.22 -2.7 169,839 + IAI47_00805 0.22 -0.2 169,839 + IAI47_00805 0.22 +0.3 169,839 + IAI47_00805 0.22 +0.1 169,839 + IAI47_00805 0.22 +1.6 169,839 + IAI47_00805 0.22 +0.3 169,840 - IAI47_00805 0.23 +0.6 169,840 - IAI47_00805 0.23 +1.1 169,840 - IAI47_00805 0.23 -2.7 169,840 - IAI47_00805 0.23 +1.8 169,840 - IAI47_00805 0.23 +2.8 169,843 + IAI47_00805 0.23 +2.1 169,844 - IAI47_00805 0.23 +2.1 169,844 - IAI47_00805 0.23 -1.3 169,870 + IAI47_00805 0.29 -0.9 169,929 + IAI47_00805 0.43 +1.3 169,929 + IAI47_00805 0.43 +0.3 169,929 + IAI47_00805 0.43 +0.3 169,929 + IAI47_00805 0.43 -0.7 169,930 - IAI47_00805 0.43 -0.1 169,930 - IAI47_00805 0.43 -1.8 169,930 - IAI47_00805 0.43 +0.7 169,930 - IAI47_00805 0.43 -0.1
Or see this region's nucleotide sequence