Strain Fitness in Pantoea sp. MT58 around IAI47_19315

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
87,321	+		IAI47_19310	0.19	-0.5
87,340	+		IAI47_19310	0.22	+0.3
87,340	+		IAI47_19310	0.22	+0.3
87,340	+		IAI47_19310	0.22	-0.5
87,340	+		IAI47_19310	0.22	+0.4
87,340	+		IAI47_19310	0.22	+0.3
87,340	+		IAI47_19310	0.22	+1.5
87,340	+		IAI47_19310	0.22	+0.6
87,340	+		IAI47_19310	0.22	+1.4
87,340	+		IAI47_19310	0.22	-0.1
87,341	-		IAI47_19310	0.22	-0.2
87,341	-		IAI47_19310	0.22	+0.1
87,341	-		IAI47_19310	0.22	-0.1
87,388	+		IAI47_19310	0.30	-0.0
87,436	+		IAI47_19310	0.39	+0.2
87,437	-		IAI47_19310	0.39	-0.2
87,437	-		IAI47_19310	0.39	+0.6
87,438	+		IAI47_19310	0.39	+1.8
87,438	+		IAI47_19310	0.39	+1.6
87,438	+		IAI47_19310	0.39	+0.3
87,439	-		IAI47_19310	0.39	+0.3
87,516	+		IAI47_19310	0.53	+0.8
87,516	+		IAI47_19310	0.53	+0.8
87,517	-		IAI47_19310	0.53	-2.0
87,534	+		IAI47_19310	0.56	+1.6
87,534	+		IAI47_19310	0.56	-1.3
87,534	+		IAI47_19310	0.56	-1.5
87,534	+		IAI47_19310	0.56	+2.3
87,534	+		IAI47_19310	0.56	-2.1
87,534	+		IAI47_19310	0.56	+3.2
87,534	+		IAI47_19310	0.56	+0.1
87,534	+		IAI47_19310	0.56	+0.8
87,534	+		IAI47_19310	0.56	+0.3
87,535	-		IAI47_19310	0.56	+1.8
87,535	-		IAI47_19310	0.56	-0.0
87,535	-		IAI47_19310	0.56	+0.7
87,560	+		IAI47_19310	0.60	+0.4
87,561	-		IAI47_19310	0.60	-1.3
87,561	-		IAI47_19310	0.60	-1.2
87,579	+		IAI47_19310	0.63	-0.2
87,579	+		IAI47_19310	0.63	-1.3
87,579	+		IAI47_19310	0.63	+1.4
87,579	+		IAI47_19310	0.63	+1.1
87,580	-		IAI47_19310	0.64	+1.3
87,580	-		IAI47_19310	0.64	-1.3
87,580	-		IAI47_19310	0.64	+0.8
87,580	-		IAI47_19310	0.64	+1.3
87,580	-		IAI47_19310	0.64	-0.9
87,580	-		IAI47_19310	0.64	-1.6
87,580	-		IAI47_19310	0.64	+1.1
87,662	+		IAI47_19310	0.78	-0.1
87,663	-		IAI47_19310	0.78	+0.6
87,663	-		IAI47_19310	0.78	-0.2
87,663	-		IAI47_19310	0.78	+1.0
87,677	+		IAI47_19310	0.80	-1.1
87,677	+		IAI47_19310	0.80	-0.5
87,678	-		IAI47_19310	0.80	+1.1
87,739	+				+0.8
87,740	-				-0.7
87,744	+				-0.7
87,764	-				-0.6
87,764	-				-1.1
87,787	-				-0.5
87,811	+				+0.8
87,812	-				+0.3
87,825	-				-0.3
87,825	-				-1.7
87,830	+				-0.0
87,830	+				+0.7
87,830	+				-0.5
87,831	-				+0.6
87,831	-				-0.0
87,831	-				-1.1
87,831	-				+1.1
87,831	-				+0.3
87,852	-				+0.4
87,860	+				+0.9
87,861	-				+0.9
87,881	+				+0.1
87,882	-				+1.0
87,882	-				+0.3
87,882	-				+0.1
87,882	-				+1.0
87,883	+				-0.0
87,883	+				-0.0
87,884	-				+0.3
87,884	-				-0.5
87,884	-				-0.7
87,884	-				+1.0
87,893	+				-1.5
87,893	+				+0.2
87,951	+				+1.0
87,951	+				+2.0
87,951	+				-0.1
87,952	-				-0.8
87,962	-				+0.3
87,962	-				-0.7
87,982	+				-2.3
87,983	-				-0.2
87,995	+				+1.0
87,995	+				+1.3
87,995	+				-0.1
87,995	+				+2.3
87,995	+				-0.4
87,996	-				+0.7
87,996	-				-0.7
87,996	-				+0.7
87,996	-				-0.8
87,996	-				+0.3
87,998	+				+0.3
87,998	+				-1.3
87,998	+				+0.8
87,999	-				+0.8
87,999	-				-0.4
87,999	-				-0.5
87,999	-				+0.6
87,999	-				+1.8
88,005	+				+1.0
88,006	-				+1.5
88,006	-				-0.5
88,006	-				-0.0
88,006	-				-1.3
88,009	+				+1.1
88,051	+				-0.1
88,051	+				+0.3
88,052	-				+0.5
88,052	-				+1.1
88,093	-				+1.1
88,101	-				-0.3
88,107	+				-0.2
88,107	+				+0.6
88,108	-				+0.3
88,108	-				-1.5
88,108	-				+0.8
88,108	-				-0.6
88,117	+				+0.3
88,117	+				+0.3
88,118	-				+0.6
88,118	-				+0.4
88,131	+				+0.3
88,131	+				+0.7
88,131	+				-1.0
88,132	-				-0.2
88,132	-				-0.7
88,162	-				+0.3
88,162	-				+1.3
88,162	-				-0.3
88,162	-				-1.0
88,162	-				+1.0
88,173	+				+1.4
88,210	+				-1.1
88,210	+				+1.3
88,222	-				-0.6
88,267	+				+0.9
88,267	+				+1.3
88,271	+				+3.4
88,279	+				-0.0
88,290	+				+0.7
88,290	+				-1.1
88,291	-				-0.7
88,291	-				+0.3
88,300	+				-0.9
88,314	+				-1.5
88,314	+				-0.0
88,314	+				+1.3
88,314	+				+0.8
88,315	-				-0.3
88,315	-				+0.0
88,317	+				-0.3
88,317	+				-0.3
88,317	+				-0.5
88,317	+				-0.5
88,318	-				-0.5
88,318	-				-0.4
88,365	+		IAI47_19315	0.18	+0.3
88,365	+		IAI47_19315	0.18	+1.3
88,365	+		IAI47_19315	0.18	-0.3
88,432	-		IAI47_19315	0.45	-0.0
88,432	-		IAI47_19315	0.45	-0.1
88,432	-		IAI47_19315	0.45	+0.5
88,454	-		IAI47_19315	0.54	+0.5
88,482	-		IAI47_19315	0.65	-2.9
88,489	+		IAI47_19315	0.68	-0.2
88,490	-		IAI47_19315	0.68	+0.3
88,493	+		IAI47_19315	0.69	+0.0
88,493	+		IAI47_19315	0.69	-1.5
88,494	-		IAI47_19315	0.70	+1.1
88,517	+		IAI47_19315	0.79	+0.8
88,517	+		IAI47_19315	0.79	-0.2
88,517	+		IAI47_19315	0.79	-0.0
88,520	+		IAI47_19315	0.80	-0.7
88,521	-		IAI47_19315	0.81	-1.1
88,521	-		IAI47_19315	0.81	+0.9
88,566	+				-0.3
88,567	-				+0.1
88,570	-				-0.7
88,570	-				+0.3
88,573	-				-1.9
88,582	-				+0.9
88,618	-				+0.5
88,813	+		IAI47_19320	0.21	-0.2
88,813	+		IAI47_19320	0.21	+0.8
88,814	-		IAI47_19320	0.21	+2.3
88,816	+		IAI47_19320	0.21	+1.4
88,817	-		IAI47_19320	0.21	+0.5
88,826	+		IAI47_19320	0.23	+2.3
88,837	+		IAI47_19320	0.24	+2.3
88,847	+		IAI47_19320	0.26	-0.3
88,877	+		IAI47_19320	0.31	+0.8
88,878	-		IAI47_19320	0.31	-0.3
88,923	+		IAI47_19320	0.38	-1.2
88,947	-		IAI47_19320	0.42	+1.2
88,949	+		IAI47_19320	0.42	+0.5
88,954	+		IAI47_19320	0.43	+0.6
88,954	+		IAI47_19320	0.43	-0.2
88,994	+		IAI47_19320	0.49	+0.3
88,994	+		IAI47_19320	0.49	-0.2
89,039	-		IAI47_19320	0.56	+1.4
89,058	+		IAI47_19320	0.59	-0.1
89,061	-		IAI47_19320	0.60	-1.2
89,098	-		IAI47_19320	0.66	-0.7
89,098	-		IAI47_19320	0.66	-0.3
89,104	-		IAI47_19320	0.67	+0.3
89,150	+		IAI47_19320	0.74	-1.7
89,150	+		IAI47_19320	0.74	-0.6
89,151	-		IAI47_19320	0.74	-1.2
89,151	-		IAI47_19320	0.74	-0.5
89,154	+		IAI47_19320	0.75	-0.6
89,155	-		IAI47_19320	0.75	+1.1
89,155	-		IAI47_19320	0.75	+0.1
89,155	-		IAI47_19320	0.75	+1.3
89,156	+		IAI47_19320	0.75	-1.0
89,156	+		IAI47_19320	0.75	+0.8
89,183	+		IAI47_19320	0.79	-0.3
89,184	-		IAI47_19320	0.79	+0.3
89,190	-		IAI47_19320	0.80	-0.2
89,217	-		IAI47_19320	0.85	-0.2
89,236	-		IAI47_19320	0.88	-0.7
89,258	+				-0.2
89,259	-				+3.1
89,259	-				-2.3
89,303	-				+0.4
89,352	-				-0.2
89,374	+				-0.5
89,391	-				-0.7
89,419	-				-0.9
89,450	+				-0.2
89,473	-				+0.3
89,497	+				-1.0
89,507	-				-0.0
89,510	+				-1.0
89,535	-				+0.7
89,548	+				-1.3
89,552	-				-0.0