Strain Fitness in Pantoea sp. MT58 around IAI47_16255

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
3,441,024	+		IAI47_16245	0.61	+0.3
3,441,024	+		IAI47_16245	0.61	-0.9
3,441,024	+		IAI47_16245	0.61	+0.7
3,441,024	+		IAI47_16245	0.61	+0.2
3,441,024	+		IAI47_16245	0.61	-0.4
3,441,025	-		IAI47_16245	0.61	+0.6
3,441,123	+		IAI47_16245	0.76	-0.9
3,441,123	+		IAI47_16245	0.76	-0.3
3,441,123	+		IAI47_16245	0.76	+1.2
3,441,123	+		IAI47_16245	0.76	-1.0
3,441,123	+		IAI47_16245	0.76	-1.1
3,441,123	+		IAI47_16245	0.76	+0.9
3,441,123	+		IAI47_16245	0.76	-0.2
3,441,123	+		IAI47_16245	0.76	-1.4
3,441,123	+		IAI47_16245	0.76	-2.0
3,441,124	-		IAI47_16245	0.76	+0.6
3,441,124	-		IAI47_16245	0.76	-1.4
3,441,124	-		IAI47_16245	0.76	-0.8
3,441,124	-		IAI47_16245	0.76	+2.3
3,441,173	-		IAI47_16245	0.84	-0.1
3,441,219	+				-1.0
3,441,220	-				+0.1
3,441,263	+				-0.4
3,441,263	+				-0.4
3,441,263	+				+1.3
3,441,264	-				+1.1
3,441,264	-				+1.1
3,441,264	-				+3.5
3,441,264	-				+0.3
3,441,264	-				+0.5
3,441,264	-				+0.1
3,441,271	+				+0.3
3,441,271	+				-1.0
3,441,271	+				-1.1
3,441,271	+				-2.4
3,441,271	+				+1.1
3,441,271	+				-0.4
3,441,271	+				-0.0
3,441,271	+				+1.0
3,441,271	+				+0.6
3,441,271	+				+1.0
3,441,272	-				-0.0
3,441,272	-				+1.6
3,441,272	-				-0.1
3,441,272	-				+0.5
3,441,272	-				-0.5
3,441,272	-				-0.2
3,441,272	-				-0.3
3,441,279	+				-0.5
3,441,279	+				+1.3
3,441,280	-				+1.1
3,441,280	-				-1.1
3,441,280	-				-0.6
3,441,280	-				+0.8
3,441,290	-				-1.1
3,441,291	+				-0.1
3,441,291	+				-0.5
3,441,291	+				+0.7
3,441,291	+				-1.4
3,441,292	-				+2.3
3,441,312	-				-0.7
3,441,389	+				+0.2
3,441,389	+				+0.1
3,441,389	+				-1.0
3,441,390	-				+0.3
3,441,390	-				+0.3
3,441,390	-				-1.0
3,441,390	-				-2.0
3,441,457	+				+0.6
3,441,458	-				+1.0
3,441,473	+				+0.3
3,441,481	+				+0.5
3,441,481	+				-2.5
3,441,481	+				+1.3
3,441,481	+				+0.3
3,441,481	+				-0.2
3,441,481	+				+1.9
3,441,481	+				+0.9
3,441,481	+				-0.0
3,441,481	+				-1.3
3,441,482	-				-0.4
3,441,482	-				+0.6
3,441,482	-				-1.1
3,441,482	-				-1.0
3,441,482	-				-0.7
3,441,482	-				+0.4
3,441,482	-				-0.9
3,441,482	-				-0.7
3,441,482	-				-2.0
3,441,482	-				+0.1
3,441,482	-				+1.0
3,441,482	-				-0.6
3,441,485	+				-0.7
3,441,485	+				+1.3
3,441,485	+				-0.7
3,441,485	+				+1.3
3,441,485	+				-0.1
3,441,486	-				+1.0
3,441,486	-				+0.8
3,441,486	-				-0.1
3,441,486	-				-0.1
3,441,486	-				-2.4
3,441,486	-				+1.8
3,441,486	-				-1.9
3,441,486	-				-0.4
3,441,486	-				-0.3
3,441,486	-				+0.3
3,441,574	+		IAI47_16250	0.18	-1.1
3,441,574	+		IAI47_16250	0.18	+1.2
3,441,574	+		IAI47_16250	0.18	+2.5
3,441,575	-		IAI47_16250	0.18	-1.1
3,441,575	-		IAI47_16250	0.18	-2.5
3,441,877	+		IAI47_16250	0.76	+0.9
3,441,877	+		IAI47_16250	0.76	-2.0
3,441,877	+		IAI47_16250	0.76	+0.1
3,441,878	-		IAI47_16250	0.76	+1.3
3,441,941	+		IAI47_16250	0.88	+2.5
3,441,941	+		IAI47_16250	0.88	+1.0
3,441,942	-		IAI47_16250	0.89	+0.2
3,441,942	-		IAI47_16250	0.89	-0.6
3,441,989	+				-0.7
3,441,990	-				+0.7
3,441,998	+				+2.3
3,441,998	+				+1.9
3,441,999	-				-0.2
3,442,064	-		IAI47_16255	0.20	+0.0
3,442,066	+		IAI47_16255	0.20	+0.2
3,442,066	+		IAI47_16255	0.20	+0.9
3,442,066	+		IAI47_16255	0.20	+2.3
3,442,067	-		IAI47_16255	0.21	-2.0
3,442,067	-		IAI47_16255	0.21	-0.7
3,442,067	-		IAI47_16255	0.21	+0.2
3,442,067	-		IAI47_16255	0.21	-2.0
3,442,142	+		IAI47_16255	0.44	-1.2
3,442,142	+		IAI47_16255	0.44	+1.8
3,442,142	+		IAI47_16255	0.44	+0.8
3,442,142	+		IAI47_16255	0.44	+0.3
3,442,143	-		IAI47_16255	0.44	-1.3
3,442,143	-		IAI47_16255	0.44	+2.9
3,442,143	-		IAI47_16255	0.44	-0.7
3,442,143	-		IAI47_16255	0.44	+0.9
3,442,143	-		IAI47_16255	0.44	-1.9
3,442,154	-		IAI47_16255	0.48	+1.5
3,442,154	-		IAI47_16255	0.48	+0.3
3,442,273	+		IAI47_16255	0.85	+0.3
3,442,273	+		IAI47_16255	0.85	-0.6
3,442,273	+		IAI47_16255	0.85	-2.0
3,442,273	+		IAI47_16255	0.85	-0.3
3,442,274	-		IAI47_16255	0.85	-1.0
3,442,274	-		IAI47_16255	0.85	-0.6
3,442,297	+				-1.8
3,442,297	+				+0.4
3,442,359	+				+0.3
3,442,360	-				-0.7
3,442,360	-				+0.7
3,442,360	-				+0.7
3,442,368	+				-0.5
3,442,368	+				-0.6
3,442,368	+				+2.3
3,442,368	+				+1.6
3,442,368	+				-0.4
3,442,368	+				+0.2
3,442,368	+				-0.5
3,442,369	-				+0.3
3,442,369	-				+0.3
3,442,369	-				-0.3
3,442,369	-				+1.5
3,442,371	+				+0.2
3,442,372	-				+0.6
3,442,372	-				-1.7
3,442,425	+				+1.5
3,442,425	+				+0.9
3,442,425	+				-0.7
3,442,426	-				+1.9
3,442,426	-				+1.8
3,442,431	+				-0.1
3,442,431	+				-0.4
3,442,431	+				-2.4
3,442,431	+				+1.0
3,442,431	+				+2.4
3,442,432	-				+1.0
3,442,432	-				+1.1
3,442,432	-				-0.3
3,442,432	-				-1.3
3,442,432	-				+0.1
3,442,432	-				-1.4
3,442,432	-				+1.0
3,442,434	+				-1.5
3,442,434	+				-0.3
3,442,434	+				+1.2
3,442,434	+				-0.7
3,442,434	+				-0.1
3,442,434	+				+0.3
3,442,443	+				-0.8
3,442,443	+				+0.3
3,442,464	+				-0.3
3,442,498	+				-0.3
3,442,499	-				-0.5
3,442,499	-				-0.2
3,442,499	-				+1.8
3,442,505	+				+1.4
3,442,568	-		IAI47_16260	0.10	-0.7
3,442,569	+		IAI47_16260	0.11	-2.0
3,442,569	+		IAI47_16260	0.11	-0.3
3,442,569	+		IAI47_16260	0.11	+0.0
3,442,570	-		IAI47_16260	0.11	-1.3
3,442,570	-		IAI47_16260	0.11	+1.1
3,442,611	+		IAI47_16260	0.13	+0.1
3,442,611	+		IAI47_16260	0.13	-0.3
3,442,611	+		IAI47_16260	0.13	+0.3
3,442,612	-		IAI47_16260	0.13	-0.0
3,442,617	+		IAI47_16260	0.13	-0.1
3,442,617	+		IAI47_16260	0.13	+0.9
3,442,617	+		IAI47_16260	0.13	-0.3
3,442,617	+		IAI47_16260	0.13	+0.5
3,442,617	+		IAI47_16260	0.13	+1.0
3,442,617	+		IAI47_16260	0.13	+0.7
3,442,617	+		IAI47_16260	0.13	-1.3
3,442,617	+		IAI47_16260	0.13	-0.7
3,442,617	+		IAI47_16260	0.13	+0.5
3,442,617	+		IAI47_16260	0.13	-0.1
3,442,618	-		IAI47_16260	0.13	-0.5
3,442,618	-		IAI47_16260	0.13	-1.5
3,442,618	-		IAI47_16260	0.13	+0.0
3,442,618	-		IAI47_16260	0.13	+1.2
3,442,618	-		IAI47_16260	0.13	-0.9
3,442,626	+		IAI47_16260	0.13	-0.0
3,442,626	+		IAI47_16260	0.13	-0.3
3,442,626	+		IAI47_16260	0.13	-0.5
3,442,627	-		IAI47_16260	0.14	+0.7
3,442,634	-		IAI47_16260	0.14	+0.1
3,442,683	+		IAI47_16260	0.16	+1.5
3,442,684	-		IAI47_16260	0.17	+1.0
3,442,684	-		IAI47_16260	0.17	+1.9
3,442,691	+		IAI47_16260	0.17	-0.2
3,442,691	+		IAI47_16260	0.17	-0.8
3,442,691	+		IAI47_16260	0.17	+1.4
3,442,691	+		IAI47_16260	0.17	-0.5
3,442,691	+		IAI47_16260	0.17	+1.3
3,442,691	+		IAI47_16260	0.17	+1.2
3,442,691	+		IAI47_16260	0.17	-0.4
3,442,691	+		IAI47_16260	0.17	+0.1
3,442,691	+		IAI47_16260	0.17	+0.0
3,442,691	+		IAI47_16260	0.17	+0.0
3,442,691	+		IAI47_16260	0.17	+0.3
3,442,692	-		IAI47_16260	0.17	+1.2
3,442,692	-		IAI47_16260	0.17	-1.1
3,442,692	-		IAI47_16260	0.17	+2.1
3,442,692	-		IAI47_16260	0.17	+0.4
3,442,692	-		IAI47_16260	0.17	-1.2
3,442,692	-		IAI47_16260	0.17	+0.3
3,442,692	-		IAI47_16260	0.17	-0.8
3,442,692	-		IAI47_16260	0.17	+0.9
3,442,693	+		IAI47_16260	0.17	+0.3
3,442,693	+		IAI47_16260	0.17	-0.2
3,442,694	-		IAI47_16260	0.17	+1.0
3,442,694	-		IAI47_16260	0.17	+0.3
3,442,694	-		IAI47_16260	0.17	+0.6
3,442,694	-		IAI47_16260	0.17	+0.3
3,442,694	-		IAI47_16260	0.17	+0.1
3,442,698	+		IAI47_16260	0.17	-1.9
3,442,698	+		IAI47_16260	0.17	+2.3
3,442,698	+		IAI47_16260	0.17	-0.2
3,442,698	+		IAI47_16260	0.17	+0.3
3,442,698	+		IAI47_16260	0.17	-0.7
3,442,698	+		IAI47_16260	0.17	+0.0
3,442,698	+		IAI47_16260	0.17	-0.7
3,442,698	+		IAI47_16260	0.17	-2.0
3,442,699	-		IAI47_16260	0.17	-1.6
3,442,699	-		IAI47_16260	0.17	+0.1
3,442,699	-		IAI47_16260	0.17	+0.9
3,442,699	-		IAI47_16260	0.17	-1.0
3,442,699	-		IAI47_16260	0.17	-1.4
3,442,699	-		IAI47_16260	0.17	-0.3
3,442,711	+		IAI47_16260	0.18	-2.3
3,442,711	+		IAI47_16260	0.18	+0.3
3,442,712	-		IAI47_16260	0.18	-0.9
3,442,712	-		IAI47_16260	0.18	+0.5
3,442,712	-		IAI47_16260	0.18	+2.3
3,442,712	-		IAI47_16260	0.18	-1.7
3,442,732	+		IAI47_16260	0.19	-1.3
3,442,732	+		IAI47_16260	0.19	-0.4
3,442,732	+		IAI47_16260	0.19	-0.7
3,442,732	+		IAI47_16260	0.19	+1.1
3,442,733	-		IAI47_16260	0.19	-0.3
3,442,733	-		IAI47_16260	0.19	+0.2
3,442,733	-		IAI47_16260	0.19	+0.6
3,442,733	-		IAI47_16260	0.19	+0.2
3,442,815	+		IAI47_16260	0.23	+1.3
3,442,815	+		IAI47_16260	0.23	-0.4
3,442,815	+		IAI47_16260	0.23	+0.7
3,442,815	+		IAI47_16260	0.23	+0.3
3,442,816	-		IAI47_16260	0.23	+1.1
3,442,816	-		IAI47_16260	0.23	-0.7
3,442,843	+		IAI47_16260	0.25	+0.1
3,442,843	+		IAI47_16260	0.25	-1.7
3,442,854	+		IAI47_16260	0.25	-0.2
3,442,854	+		IAI47_16260	0.25	+1.1
3,442,854	+		IAI47_16260	0.25	-2.0
3,442,855	-		IAI47_16260	0.25	-0.3
3,442,855	-		IAI47_16260	0.25	+0.3
3,442,916	-		IAI47_16260	0.29	+0.3
3,442,916	-		IAI47_16260	0.29	+2.3
3,442,984	+		IAI47_16260	0.32	-1.2
3,442,985	-		IAI47_16260	0.32	+0.3
3,442,985	-		IAI47_16260	0.32	-0.1
3,443,047	-		IAI47_16260	0.35	+1.8
3,443,047	-		IAI47_16260	0.35	-0.0
3,443,130	+		IAI47_16260	0.40	+0.0
3,443,130	+		IAI47_16260	0.40	+0.3
3,443,130	+		IAI47_16260	0.40	-0.6
3,443,131	-		IAI47_16260	0.40	+0.5
3,443,135	+		IAI47_16260	0.40	-1.3
3,443,135	+		IAI47_16260	0.40	-0.5
3,443,136	-		IAI47_16260	0.40	-0.3
3,443,136	-		IAI47_16260	0.40	-0.4
3,443,136	-		IAI47_16260	0.40	+1.5
3,443,136	-		IAI47_16260	0.40	-0.1
3,443,136	-		IAI47_16260	0.40	+0.3
3,443,166	+		IAI47_16260	0.42	-1.0
3,443,219	-		IAI47_16260	0.44	-1.7
3,443,219	-		IAI47_16260	0.44	-0.8
3,443,253	+		IAI47_16260	0.46	+0.3
3,443,254	-		IAI47_16260	0.46	-1.5
3,443,254	-		IAI47_16260	0.46	-0.2