Strain Fitness in Pantoea sp. MT58 around IAI47_13605

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,884,160	-				-1.0
2,884,181	+				-0.8
2,884,186	+				-0.8
2,884,206	+				-1.5
2,885,020	+				-1.2
2,885,021	-				-0.7
2,885,070	+				+1.3
2,885,071	-				-0.4
2,885,071	-				+0.8
2,885,151	+				-1.5
2,885,152	-				-0.7
2,885,178	+				+0.3
2,885,226	+		IAI47_13605	0.12	+0.3
2,885,227	-		IAI47_13605	0.12	-1.1
2,885,334	+		IAI47_13605	0.22	-0.9
2,885,334	+		IAI47_13605	0.22	+0.3
2,885,335	-		IAI47_13605	0.23	-0.5
2,885,335	-		IAI47_13605	0.23	-1.0
2,885,335	-		IAI47_13605	0.23	+1.0
2,885,335	-		IAI47_13605	0.23	-2.5
2,885,429	+		IAI47_13605	0.31	+0.7
2,885,429	+		IAI47_13605	0.31	-0.2
2,885,460	+		IAI47_13605	0.34	+0.9
2,885,460	+		IAI47_13605	0.34	+0.0
2,885,460	+		IAI47_13605	0.34	-1.8
2,885,460	+		IAI47_13605	0.34	+1.3
2,885,460	+		IAI47_13605	0.34	+0.0
2,885,461	-		IAI47_13605	0.34	+0.9
2,885,507	+		IAI47_13605	0.39	-1.1
2,885,507	+		IAI47_13605	0.39	-1.5
2,885,507	+		IAI47_13605	0.39	-0.3
2,885,507	+		IAI47_13605	0.39	-0.1
2,885,507	+		IAI47_13605	0.39	+0.1
2,885,507	+		IAI47_13605	0.39	-0.9
2,885,507	+		IAI47_13605	0.39	-0.5
2,885,507	+		IAI47_13605	0.39	-2.5
2,885,507	+		IAI47_13605	0.39	-0.1
2,885,507	+		IAI47_13605	0.39	+0.3
2,885,508	-		IAI47_13605	0.39	-0.1
2,885,508	-		IAI47_13605	0.39	-0.0
2,885,508	-		IAI47_13605	0.39	-0.5
2,885,508	-		IAI47_13605	0.39	+2.1
2,885,508	-		IAI47_13605	0.39	+0.6
2,885,508	-		IAI47_13605	0.39	-0.8
2,885,571	+		IAI47_13605	0.45	-1.2
2,885,571	+		IAI47_13605	0.45	+2.2
2,885,571	+		IAI47_13605	0.45	+0.2
2,885,571	+		IAI47_13605	0.45	-0.2
2,885,572	-		IAI47_13605	0.45	-0.9
2,885,572	-		IAI47_13605	0.45	-0.2
2,885,655	+		IAI47_13605	0.53	+0.2
2,885,656	-		IAI47_13605	0.53	-0.7
2,885,696	+		IAI47_13605	0.57	-0.7
2,885,696	+		IAI47_13605	0.57	+2.7
2,885,696	+		IAI47_13605	0.57	-1.9
2,885,696	+		IAI47_13605	0.57	-0.7
2,885,696	+		IAI47_13605	0.57	-0.8
2,885,697	-		IAI47_13605	0.57	+1.5
2,885,697	-		IAI47_13605	0.57	-0.9
2,885,707	-		IAI47_13605	0.58	-0.4
2,885,712	+		IAI47_13605	0.58	+0.1
2,885,737	+		IAI47_13605	0.61	-0.3
2,885,752	-		IAI47_13605	0.62	+0.8
2,885,769	+		IAI47_13605	0.64	+0.3
2,885,770	-		IAI47_13605	0.64	-0.1
2,885,770	-		IAI47_13605	0.64	-0.2
2,885,801	+		IAI47_13605	0.67	+2.3
2,885,802	-		IAI47_13605	0.67	-0.7
2,885,802	-		IAI47_13605	0.67	-0.9
2,885,814	+		IAI47_13605	0.68	-0.4
2,885,814	+		IAI47_13605	0.68	-0.5
2,885,815	-		IAI47_13605	0.68	+1.0
2,885,815	-		IAI47_13605	0.68	-1.2
2,885,815	-		IAI47_13605	0.68	-0.4
2,885,815	-		IAI47_13605	0.68	+0.3
2,885,816	+		IAI47_13605	0.68	+1.5
2,885,816	+		IAI47_13605	0.68	+0.5
2,885,816	+		IAI47_13605	0.68	+0.3
2,885,816	+		IAI47_13605	0.68	-1.9
2,885,816	+		IAI47_13605	0.68	-2.0
2,885,816	+		IAI47_13605	0.68	+0.3
2,885,816	+		IAI47_13605	0.68	-0.7
2,885,817	-		IAI47_13605	0.68	+0.7
2,885,817	-		IAI47_13605	0.68	-2.5
2,885,817	-		IAI47_13605	0.68	-0.4
2,885,817	-		IAI47_13605	0.68	-0.0
2,885,870	+		IAI47_13605	0.73	+1.5
2,885,936	+		IAI47_13605	0.80	+0.9
2,885,937	-		IAI47_13605	0.80	-2.5
2,885,955	+		IAI47_13605	0.81	+0.8
2,885,955	+		IAI47_13605	0.81	-0.0
2,885,955	+		IAI47_13605	0.81	+0.3
2,885,955	+		IAI47_13605	0.81	-0.6
2,885,956	-		IAI47_13605	0.81	-0.5
2,885,956	-		IAI47_13605	0.81	-0.5
2,885,956	-		IAI47_13605	0.81	-0.3
2,885,956	-		IAI47_13605	0.81	-0.1
2,886,101	-				+0.2
2,886,111	+				-0.9
2,886,127	+				-0.7
2,886,127	+				-1.1
2,886,127	+				-1.0
2,886,127	+				-0.3
2,886,127	+				+0.3
2,886,128	-				+0.2
2,886,128	-				+1.0
2,886,128	-				+2.5
2,886,128	-				+0.3
2,886,128	-				-1.2
2,886,128	-				-0.5
2,886,128	-				-0.0
2,886,128	-				+1.3
2,886,128	-				+1.3
2,886,128	-				-0.3
2,886,143	+				+1.2
2,886,143	+				+1.4
2,886,150	+				+0.9
2,886,150	+				+1.2
2,886,150	+				-0.1
2,886,151	-				-0.3
2,886,226	+				-1.6
2,886,226	+				-0.7
2,886,226	+				-0.1
2,886,227	-				+0.1
2,886,227	-				-1.8
2,886,244	+				-0.2
2,886,259	+				+0.7
2,886,259	+				-0.6
2,886,260	-				-0.7
2,886,260	-				+0.5
2,886,260	-				+0.7
2,886,260	-				+1.6
2,886,300	-				+0.1
2,886,300	-				-0.7
2,886,322	+				+1.3
2,886,322	+				+0.7
2,886,323	-				-0.5
2,886,332	-				-0.2
2,886,332	-				+1.5
2,886,332	-				-1.0
2,886,380	+				-0.7
2,886,381	-				+0.3
2,886,381	-				-0.1
2,886,381	-				-1.0
2,886,407	+				-2.0
2,886,422	+				-1.7
2,886,423	-				+0.7
2,886,423	-				+1.7
2,886,434	+				+1.8
2,886,434	+				+0.0
2,886,435	-				-0.8
2,886,435	-				+0.2
2,886,435	-				+1.3
2,886,436	+				+1.3
2,886,436	+				+0.3
2,886,436	+				-0.7
2,886,436	+				+1.5
2,886,436	+				-0.6
2,886,436	+				+0.8
2,886,437	-				+0.7
2,886,437	-				-0.5
2,886,437	-				-0.8
2,886,458	-				-0.4
2,886,530	+		IAI47_13610	0.24	+0.5
2,886,530	+		IAI47_13610	0.24	-0.2
2,886,530	+		IAI47_13610	0.24	-1.7
2,886,530	+		IAI47_13610	0.24	-2.5
2,886,531	-		IAI47_13610	0.25	-0.4
2,886,531	-		IAI47_13610	0.25	-1.1
2,886,531	-		IAI47_13610	0.25	+0.5
2,886,531	-		IAI47_13610	0.25	+0.4
2,886,536	+		IAI47_13610	0.26	-0.2
2,886,537	-		IAI47_13610	0.26	-1.2
2,886,537	-		IAI47_13610	0.26	+1.3
2,886,537	-		IAI47_13610	0.26	+1.2
2,886,537	-		IAI47_13610	0.26	-0.3
2,886,612	-		IAI47_13610	0.47	+0.9
2,886,612	-		IAI47_13610	0.47	+0.3
2,886,620	+		IAI47_13610	0.49	+0.1
2,886,638	+		IAI47_13610	0.54	+1.3
2,886,638	+		IAI47_13610	0.54	-0.9
2,886,638	+		IAI47_13610	0.54	+0.5
2,886,639	-		IAI47_13610	0.54	-2.0
2,886,639	-		IAI47_13610	0.54	+0.3
2,886,639	-		IAI47_13610	0.54	-0.1
2,886,639	-		IAI47_13610	0.54	+0.3
2,886,639	-		IAI47_13610	0.54	+0.7
2,886,639	-		IAI47_13610	0.54	-0.5
2,886,639	-		IAI47_13610	0.54	+0.5
2,886,674	+		IAI47_13610	0.64	+1.3
2,886,674	+		IAI47_13610	0.64	-1.4
2,886,674	+		IAI47_13610	0.64	+0.9
2,886,674	+		IAI47_13610	0.64	-1.2
2,886,674	+		IAI47_13610	0.64	-1.7
2,886,675	-		IAI47_13610	0.64	-0.1
2,886,675	-		IAI47_13610	0.64	+0.5
2,886,675	-		IAI47_13610	0.64	-0.4
2,886,675	-		IAI47_13610	0.64	-0.5
2,886,675	-		IAI47_13610	0.64	-1.0
2,886,675	-		IAI47_13610	0.64	+0.7
2,886,675	-		IAI47_13610	0.64	-2.2
2,886,677	+		IAI47_13610	0.64	+0.1
2,886,677	+		IAI47_13610	0.64	+0.3
2,886,677	+		IAI47_13610	0.64	+0.0
2,886,677	+		IAI47_13610	0.64	-1.1
2,886,677	+		IAI47_13610	0.64	-0.7
2,886,677	+		IAI47_13610	0.64	+0.1
2,886,677	+		IAI47_13610	0.64	-0.1
2,886,677	+		IAI47_13610	0.64	+0.5
2,886,677	+		IAI47_13610	0.64	+1.1
2,886,677	+		IAI47_13610	0.64	-2.0
2,886,677	+		IAI47_13610	0.64	-0.5
2,886,677	+		IAI47_13610	0.64	+2.1
2,886,678	-		IAI47_13610	0.65	+0.3
2,886,678	-		IAI47_13610	0.65	+0.3
2,886,678	-		IAI47_13610	0.65	-1.7
2,886,678	-		IAI47_13610	0.65	-0.5
2,886,713	+		IAI47_13610	0.74	-0.9
2,886,713	+		IAI47_13610	0.74	+0.3
2,886,713	+		IAI47_13610	0.74	-0.7
2,886,713	+		IAI47_13610	0.74	+0.3
2,886,713	+		IAI47_13610	0.74	-0.6
2,886,714	-		IAI47_13610	0.75	+1.3
2,886,714	-		IAI47_13610	0.75	+0.5
2,886,714	-		IAI47_13610	0.75	-0.5
2,886,714	-		IAI47_13610	0.75	-0.7
2,886,714	-		IAI47_13610	0.75	+0.6
2,886,738	-		IAI47_13610	0.81	+0.1
2,886,738	-		IAI47_13610	0.81	+0.9
2,886,741	-		IAI47_13610	0.82	-1.0
2,886,755	+		IAI47_13610	0.86	+0.3
2,886,755	+		IAI47_13610	0.86	+1.1
2,886,755	+		IAI47_13610	0.86	+0.2
2,886,756	-		IAI47_13610	0.86	-1.1
2,886,756	-		IAI47_13610	0.86	-1.2
2,886,756	-		IAI47_13610	0.86	+0.4
2,886,756	-		IAI47_13610	0.86	-0.7
2,886,775	+				+0.3
2,886,775	+				-1.0
2,886,775	+				-0.4
2,886,775	+				+2.2
2,886,775	+				-0.2
2,886,775	+				-1.2
2,886,775	+				-0.3
2,886,776	-				+0.5
2,886,776	-				-0.3
2,886,776	-				-0.7
2,886,776	-				+0.2
2,886,776	-				+1.1
2,886,779	+				-0.2
2,886,779	+				-2.0
2,886,780	-				+0.3
2,886,780	-				+1.3
2,886,780	-				+0.3
2,886,804	+				+1.3
2,886,804	+				-1.2
2,886,814	+				-1.1
2,886,871	-				+0.5
2,886,871	-				+1.0
2,886,875	+				+0.3
2,886,875	+				-0.2
2,886,875	+				+1.6
2,886,875	+				-1.2
2,886,876	-				+0.4
2,886,876	-				+0.6
2,886,876	-				+0.6
2,886,876	-				-2.1
2,886,979	+		IAI47_13615	0.13	+1.7
2,886,979	+		IAI47_13615	0.13	-0.3
2,886,979	+		IAI47_13615	0.13	+0.7
2,886,979	+		IAI47_13615	0.13	-2.5
2,886,979	+		IAI47_13615	0.13	-0.2
2,886,980	-		IAI47_13615	0.13	-0.7
2,887,052	-		IAI47_13615	0.25	+0.9
2,887,078	+		IAI47_13615	0.30	+1.7
2,887,079	-		IAI47_13615	0.30	-0.0
2,887,142	+		IAI47_13615	0.41	-0.7
2,887,142	+		IAI47_13615	0.41	+1.3
2,887,143	-		IAI47_13615	0.41	+0.3