Strain Fitness in Pantoea sp. MT58 around IAI47_08265

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,746,537	+		IAI47_08255	0.72	-0.6
1,746,538	-		IAI47_08255	0.72	+0.2
1,746,538	-		IAI47_08255	0.72	+0.7
1,746,568	-		IAI47_08255	0.75	+1.2
1,746,577	+		IAI47_08255	0.76	-0.6
1,746,577	+		IAI47_08255	0.76	-1.0
1,746,578	-		IAI47_08255	0.76	-0.1
1,746,578	-		IAI47_08255	0.76	+0.2
1,746,599	+		IAI47_08255	0.78	+1.4
1,746,600	-		IAI47_08255	0.78	-2.9
1,746,600	-		IAI47_08255	0.78	-0.5
1,746,600	-		IAI47_08255	0.78	-1.5
1,746,600	-		IAI47_08255	0.78	-1.3
1,746,600	-		IAI47_08255	0.78	+0.5
1,746,614	+		IAI47_08255	0.80	+2.6
1,746,614	+		IAI47_08255	0.80	-0.3
1,746,614	+		IAI47_08255	0.80	-1.8
1,746,614	+		IAI47_08255	0.80	+0.4
1,746,615	-		IAI47_08255	0.80	-2.0
1,746,615	-		IAI47_08255	0.80	+0.8
1,746,657	-		IAI47_08255	0.84	-1.5
1,746,674	+		IAI47_08255	0.85	+0.1
1,746,675	-		IAI47_08255	0.85	-1.1
1,746,675	-		IAI47_08255	0.85	+0.2
1,746,719	+		IAI47_08255	0.89	+2.2
1,746,720	-		IAI47_08255	0.90	+1.8
1,746,732	+				-0.8
1,746,803	+				-1.1
1,746,806	+				+1.2
1,746,806	+				-0.3
1,746,807	-				-0.2
1,746,807	-				+0.2
1,746,825	+				-0.1
1,746,825	+				+1.2
1,746,826	-				-1.1
1,746,826	-				+1.8
1,746,902	-		IAI47_08260	0.11	+0.2
1,746,922	+		IAI47_08260	0.14	-1.3
1,746,922	+		IAI47_08260	0.14	-0.2
1,746,928	+		IAI47_08260	0.15	+0.6
1,746,928	+		IAI47_08260	0.15	-0.8
1,746,928	+		IAI47_08260	0.15	+0.5
1,746,928	+		IAI47_08260	0.15	-0.5
1,746,928	+		IAI47_08260	0.15	+0.2
1,746,928	+		IAI47_08260	0.15	+0.7
1,746,928	+		IAI47_08260	0.15	-0.5
1,746,928	+		IAI47_08260	0.15	+1.6
1,746,928	+		IAI47_08260	0.15	+0.2
1,746,928	+		IAI47_08260	0.15	-0.5
1,746,929	-		IAI47_08260	0.15	-1.3
1,746,929	-		IAI47_08260	0.15	-0.8
1,746,929	-		IAI47_08260	0.15	-0.7
1,746,929	-		IAI47_08260	0.15	-1.5
1,746,929	-		IAI47_08260	0.15	+0.8
1,746,929	-		IAI47_08260	0.15	-0.5
1,746,932	+		IAI47_08260	0.15	+0.3
1,746,932	+		IAI47_08260	0.15	+1.8
1,746,932	+		IAI47_08260	0.15	+1.0
1,746,932	+		IAI47_08260	0.15	+0.2
1,746,932	+		IAI47_08260	0.15	+1.8
1,746,932	+		IAI47_08260	0.15	-0.9
1,746,932	+		IAI47_08260	0.15	+0.7
1,746,932	+		IAI47_08260	0.15	-0.5
1,746,932	+		IAI47_08260	0.15	-2.1
1,746,932	+		IAI47_08260	0.15	-1.5
1,746,933	-		IAI47_08260	0.16	-0.0
1,746,933	-		IAI47_08260	0.16	-0.6
1,746,933	-		IAI47_08260	0.16	+0.2
1,746,943	+		IAI47_08260	0.17	+0.2
1,746,943	+		IAI47_08260	0.17	-0.5
1,746,943	+		IAI47_08260	0.17	-0.1
1,746,943	+		IAI47_08260	0.17	+0.2
1,746,944	-		IAI47_08260	0.17	-0.1
1,746,944	-		IAI47_08260	0.17	-0.8
1,746,946	+		IAI47_08260	0.17	-0.3
1,746,946	+		IAI47_08260	0.17	-0.2
1,746,946	+		IAI47_08260	0.17	-0.1
1,746,947	-		IAI47_08260	0.18	-1.6
1,746,947	-		IAI47_08260	0.18	+1.1
1,746,947	-		IAI47_08260	0.18	+0.2
1,746,947	-		IAI47_08260	0.18	-0.4
1,746,949	+		IAI47_08260	0.18	+0.5
1,746,949	+		IAI47_08260	0.18	-0.6
1,746,949	+		IAI47_08260	0.18	-1.0
1,746,949	+		IAI47_08260	0.18	-2.3
1,746,950	-		IAI47_08260	0.18	+0.4
1,746,950	-		IAI47_08260	0.18	-2.1
1,746,950	-		IAI47_08260	0.18	-0.3
1,746,950	-		IAI47_08260	0.18	+1.1
1,746,950	-		IAI47_08260	0.18	-1.5
1,746,950	-		IAI47_08260	0.18	-0.0
1,746,972	+		IAI47_08260	0.21	+0.6
1,746,972	+		IAI47_08260	0.21	+1.5
1,746,972	+		IAI47_08260	0.21	-1.0
1,746,972	+		IAI47_08260	0.21	+1.2
1,746,972	+		IAI47_08260	0.21	-0.1
1,746,972	+		IAI47_08260	0.21	+0.7
1,746,976	+		IAI47_08260	0.22	+1.8
1,746,976	+		IAI47_08260	0.22	-0.2
1,746,977	-		IAI47_08260	0.22	-0.0
1,746,984	+		IAI47_08260	0.23	+0.7
1,747,052	-		IAI47_08260	0.33	-0.6
1,747,052	-		IAI47_08260	0.33	+0.5
1,747,052	-		IAI47_08260	0.33	+1.1
1,747,052	-		IAI47_08260	0.33	+0.7
1,747,078	+		IAI47_08260	0.37	+1.0
1,747,079	-		IAI47_08260	0.37	-1.6
1,747,084	+		IAI47_08260	0.38	-1.2
1,747,085	-		IAI47_08260	0.38	-1.8
1,747,085	-		IAI47_08260	0.38	+0.6
1,747,085	-		IAI47_08260	0.38	-0.3
1,747,102	+		IAI47_08260	0.40	+0.5
1,747,103	-		IAI47_08260	0.41	-0.0
1,747,103	-		IAI47_08260	0.41	+0.1
1,747,147	+		IAI47_08260	0.47	-0.5
1,747,147	+		IAI47_08260	0.47	-0.5
1,747,147	+		IAI47_08260	0.47	+0.7
1,747,147	+		IAI47_08260	0.47	-0.8
1,747,148	-		IAI47_08260	0.47	+0.4
1,747,148	-		IAI47_08260	0.47	-0.8
1,747,207	+		IAI47_08260	0.56	+0.5
1,747,207	+		IAI47_08260	0.56	+0.0
1,747,208	-		IAI47_08260	0.56	-0.1
1,747,208	-		IAI47_08260	0.56	-0.2
1,747,215	+		IAI47_08260	0.57	-0.3
1,747,215	+		IAI47_08260	0.57	+1.3
1,747,216	-		IAI47_08260	0.57	+0.2
1,747,316	+		IAI47_08260	0.72	+0.1
1,747,316	+		IAI47_08260	0.72	-0.9
1,747,372	+		IAI47_08260	0.80	-0.4
1,747,372	+		IAI47_08260	0.80	+0.9
1,747,372	+		IAI47_08260	0.80	+1.1
1,747,372	+		IAI47_08260	0.80	+0.1
1,747,372	+		IAI47_08260	0.80	+0.2
1,747,372	+		IAI47_08260	0.80	+0.2
1,747,373	-		IAI47_08260	0.80	+2.1
1,747,373	-		IAI47_08260	0.80	+2.9
1,747,373	-		IAI47_08260	0.80	+1.1
1,747,373	-		IAI47_08260	0.80	+0.7
1,747,373	-		IAI47_08260	0.80	+0.2
1,747,374	+		IAI47_08260	0.80	-0.8
1,747,374	+		IAI47_08260	0.80	+0.4
1,747,374	+		IAI47_08260	0.80	+0.2
1,747,375	-		IAI47_08260	0.80	-0.4
1,747,375	-		IAI47_08260	0.80	+0.8
1,747,375	-		IAI47_08260	0.80	+1.2
1,747,375	-		IAI47_08260	0.80	-0.5
1,747,434	+		IAI47_08260	0.89	-0.6
1,747,434	+		IAI47_08260	0.89	+0.4
1,747,434	+		IAI47_08260	0.89	+0.9
1,747,434	+		IAI47_08260	0.89	-0.7
1,747,434	+		IAI47_08260	0.89	-2.1
1,747,434	+		IAI47_08260	0.89	+0.9
1,747,434	+		IAI47_08260	0.89	+0.7
1,747,434	+		IAI47_08260	0.89	+1.3
1,747,435	-		IAI47_08260	0.89	-0.2
1,747,435	-		IAI47_08260	0.89	+0.2
1,747,435	-		IAI47_08260	0.89	-2.0
1,747,457	+				+0.7
1,747,457	+				-0.0
1,747,457	+				-0.8
1,747,458	-				-1.5
1,747,500	-				+0.6
1,747,500	-				+0.2
1,747,500	-				+0.4
1,747,500	-				-2.6
1,747,509	-				-0.8
1,747,553	+				+0.6
1,747,553	+				-1.1
1,747,553	+				-0.3
1,747,553	+				+1.5
1,747,553	+				+0.7
1,747,553	+				-0.6
1,747,553	+				+1.8
1,747,554	-				+0.8
1,747,554	-				+1.2
1,747,554	-				-0.1
1,747,554	-				+0.2
1,747,554	-				+0.2
1,747,554	-				-0.3
1,747,602	+				-1.1
1,747,602	+				-1.1
1,747,603	-				+0.2
1,747,635	+				-0.2
1,747,635	+				+0.3
1,747,635	+				+1.2
1,747,636	-				+1.6
1,747,662	-				+0.2
1,747,673	+		IAI47_08265	0.10	-0.1
1,747,673	+		IAI47_08265	0.10	-1.6
1,747,728	+		IAI47_08265	0.14	-0.8
1,747,728	+		IAI47_08265	0.14	-1.1
1,747,728	+		IAI47_08265	0.14	-0.1
1,747,728	+		IAI47_08265	0.14	-0.2
1,747,729	-		IAI47_08265	0.14	-1.0
1,747,729	-		IAI47_08265	0.14	-1.1
1,747,729	-		IAI47_08265	0.14	-0.3
1,747,729	-		IAI47_08265	0.14	-2.2
1,747,729	-		IAI47_08265	0.14	-0.5
1,747,733	+		IAI47_08265	0.14	+0.2
1,747,734	-		IAI47_08265	0.14	+1.2
1,747,734	-		IAI47_08265	0.14	+0.7
1,747,734	-		IAI47_08265	0.14	+0.2
1,747,751	+		IAI47_08265	0.15	+0.8
1,747,751	+		IAI47_08265	0.15	+0.0
1,747,751	+		IAI47_08265	0.15	-2.1
1,747,751	+		IAI47_08265	0.15	-1.6
1,747,751	+		IAI47_08265	0.15	+2.0
1,747,752	-		IAI47_08265	0.15	-0.0
1,747,752	-		IAI47_08265	0.15	-0.7
1,747,752	-		IAI47_08265	0.15	-0.1
1,747,752	-		IAI47_08265	0.15	-2.6
1,747,793	+		IAI47_08265	0.18	+2.2
1,747,793	+		IAI47_08265	0.18	+0.1
1,747,793	+		IAI47_08265	0.18	+0.1
1,747,794	-		IAI47_08265	0.18	+0.2
1,747,794	-		IAI47_08265	0.18	+1.0
1,747,794	-		IAI47_08265	0.18	+0.4
1,747,794	-		IAI47_08265	0.18	-1.1
1,747,794	-		IAI47_08265	0.18	-1.7
1,747,794	-		IAI47_08265	0.18	+0.2
1,747,794	-		IAI47_08265	0.18	-1.0
1,747,834	+		IAI47_08265	0.20	+0.9
1,747,834	+		IAI47_08265	0.20	+0.2
1,747,835	-		IAI47_08265	0.20	+1.3
1,747,835	-		IAI47_08265	0.20	-1.3
1,747,839	+		IAI47_08265	0.20	+0.4
1,747,839	+		IAI47_08265	0.20	-1.3
1,747,839	+		IAI47_08265	0.20	+0.6
1,747,840	-		IAI47_08265	0.20	-0.8
1,747,840	-		IAI47_08265	0.20	-2.3
1,747,840	-		IAI47_08265	0.20	+1.0
1,747,840	-		IAI47_08265	0.20	-1.2
1,747,849	-		IAI47_08265	0.21	+0.8
1,747,857	+		IAI47_08265	0.21	-1.0
1,747,857	+		IAI47_08265	0.21	+0.8
1,747,858	-		IAI47_08265	0.22	-2.3
1,747,858	-		IAI47_08265	0.22	-0.1
1,747,858	-		IAI47_08265	0.22	-1.5
1,747,858	-		IAI47_08265	0.22	-1.2
1,747,858	-		IAI47_08265	0.22	+0.5
1,747,878	+		IAI47_08265	0.23	+0.2
1,747,878	+		IAI47_08265	0.23	+1.0
1,747,878	+		IAI47_08265	0.23	-1.3
1,747,878	+		IAI47_08265	0.23	+0.1
1,747,878	+		IAI47_08265	0.23	+1.0
1,747,878	+		IAI47_08265	0.23	-1.1
1,747,878	+		IAI47_08265	0.23	-1.1
1,747,879	-		IAI47_08265	0.23	+0.2
1,747,886	+		IAI47_08265	0.23	-0.5
1,747,886	+		IAI47_08265	0.23	+1.8
1,747,886	+		IAI47_08265	0.23	-0.2
1,747,887	-		IAI47_08265	0.23	-2.3
1,747,887	-		IAI47_08265	0.23	-1.1
1,747,887	-		IAI47_08265	0.23	+1.2
1,747,887	-		IAI47_08265	0.23	-0.8
1,747,890	+		IAI47_08265	0.24	-0.2
1,747,890	+		IAI47_08265	0.24	+0.2
1,747,890	+		IAI47_08265	0.24	+0.2
1,747,891	-		IAI47_08265	0.24	-0.1
1,747,891	-		IAI47_08265	0.24	+0.5
1,747,891	-		IAI47_08265	0.24	+0.0
1,747,891	-		IAI47_08265	0.24	+1.0
1,747,891	-		IAI47_08265	0.24	-0.6
1,747,921	+		IAI47_08265	0.25	+0.2
1,747,921	+		IAI47_08265	0.25	-0.1
1,747,921	+		IAI47_08265	0.25	-0.9
1,747,922	-		IAI47_08265	0.25	-1.1
1,747,922	-		IAI47_08265	0.25	-2.0
1,747,922	-		IAI47_08265	0.25	+1.2
1,747,933	-		IAI47_08265	0.26	-0.2
1,747,933	-		IAI47_08265	0.26	+0.7
1,747,982	+		IAI47_08265	0.29	-0.8
1,747,982	+		IAI47_08265	0.29	-0.9
1,747,983	-		IAI47_08265	0.29	-0.8
1,747,983	-		IAI47_08265	0.29	+0.7
1,748,035	+		IAI47_08265	0.32	+2.6
1,748,036	-		IAI47_08265	0.32	-0.6
1,748,048	+		IAI47_08265	0.33	-2.8
1,748,048	+		IAI47_08265	0.33	-1.5
1,748,048	+		IAI47_08265	0.33	+1.2
1,748,048	+		IAI47_08265	0.33	+0.5
1,748,048	+		IAI47_08265	0.33	-0.7
1,748,048	+		IAI47_08265	0.33	+1.5
1,748,048	+		IAI47_08265	0.33	-0.4
1,748,048	+		IAI47_08265	0.33	+1.8
1,748,048	+		IAI47_08265	0.33	-1.3
1,748,048	+		IAI47_08265	0.33	-0.1
1,748,048	+		IAI47_08265	0.33	+1.1
1,748,048	+		IAI47_08265	0.33	-0.3
1,748,049	-		IAI47_08265	0.33	-0.3
1,748,049	-		IAI47_08265	0.33	-0.4
1,748,049	-		IAI47_08265	0.33	-0.1
1,748,049	-		IAI47_08265	0.33	-0.2
1,748,049	-		IAI47_08265	0.33	-0.1
1,748,049	-		IAI47_08265	0.33	-1.5
1,748,049	-		IAI47_08265	0.33	+0.8
1,748,049	-		IAI47_08265	0.33	-0.1
1,748,081	+		IAI47_08265	0.35	-0.2
1,748,081	+		IAI47_08265	0.35	-0.4
1,748,082	-		IAI47_08265	0.35	+1.2
1,748,082	-		IAI47_08265	0.35	-0.4
1,748,127	+		IAI47_08265	0.38	-0.5
1,748,127	+		IAI47_08265	0.38	-0.4
1,748,127	+		IAI47_08265	0.38	+0.6
1,748,128	-		IAI47_08265	0.38	+0.8
1,748,128	-		IAI47_08265	0.38	-0.8
1,748,128	-		IAI47_08265	0.38	-0.8
1,748,128	-		IAI47_08265	0.38	-1.1
1,748,160	+		IAI47_08265	0.40	+1.0
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