Strain Fitness in Pantoea sp. MT58 around IAI47_07980

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,686,723	+		IAI47_07970	0.13	+2.2
1,686,738	+		IAI47_07970	0.15	+3.8
1,686,738	+		IAI47_07970	0.15	+1.2
1,686,739	-		IAI47_07970	0.15	+0.3
1,686,739	-		IAI47_07970	0.15	+1.7
1,686,739	-		IAI47_07970	0.15	+2.0
1,686,743	+		IAI47_07970	0.16	+2.8
1,686,743	+		IAI47_07970	0.16	+1.8
1,686,743	+		IAI47_07970	0.16	+1.6
1,686,743	+		IAI47_07970	0.16	+4.4
1,686,743	+		IAI47_07970	0.16	+3.3
1,686,743	+		IAI47_07970	0.16	+0.7
1,686,744	-		IAI47_07970	0.16	+1.2
1,686,744	-		IAI47_07970	0.16	+2.8
1,686,744	-		IAI47_07970	0.16	+1.4
1,686,744	-		IAI47_07970	0.16	+1.4
1,686,744	-		IAI47_07970	0.16	+0.9
1,686,744	-		IAI47_07970	0.16	+0.0
1,686,746	+		IAI47_07970	0.16	+2.1
1,686,746	+		IAI47_07970	0.16	+2.3
1,686,747	-		IAI47_07970	0.16	+1.7
1,686,747	-		IAI47_07970	0.16	+1.3
1,686,771	+		IAI47_07970	0.19	+1.8
1,686,771	+		IAI47_07970	0.19	+1.9
1,686,771	+		IAI47_07970	0.19	+1.7
1,686,772	-		IAI47_07970	0.20	+1.8
1,686,772	-		IAI47_07970	0.20	+1.3
1,686,772	-		IAI47_07970	0.20	+0.4
1,686,772	-		IAI47_07970	0.20	+0.7
1,686,792	+		IAI47_07970	0.22	+1.1
1,686,805	-		IAI47_07970	0.24	-0.2
1,686,813	+		IAI47_07970	0.25	+1.5
1,686,814	-		IAI47_07970	0.25	+2.6
1,686,814	-		IAI47_07970	0.25	+1.1
1,686,823	-		IAI47_07970	0.26	+0.3
1,686,846	+		IAI47_07970	0.29	+2.2
1,686,870	+		IAI47_07970	0.32	+1.6
1,686,912	+		IAI47_07970	0.37	+0.9
1,686,913	-		IAI47_07970	0.38	+2.8
1,686,913	-		IAI47_07970	0.38	+0.3
1,686,951	+		IAI47_07970	0.42	+0.6
1,686,952	-		IAI47_07970	0.42	+1.3
1,687,160	+		IAI47_07970	0.69	+4.1
1,687,161	-		IAI47_07970	0.69	+1.5
1,687,161	-		IAI47_07970	0.69	+0.6
1,687,161	-		IAI47_07970	0.69	+0.9
1,687,220	+		IAI47_07970	0.77	+1.1
1,687,220	+		IAI47_07970	0.77	+1.5
1,687,292	+		IAI47_07970	0.86	+2.7
1,687,292	+		IAI47_07970	0.86	+1.9
1,687,326	+				+2.4
1,687,326	+				+2.2
1,687,327	-				+1.8
1,687,397	+				+2.7
1,687,397	+				+2.2
1,687,397	+				+0.9
1,687,397	+				+0.8
1,687,397	+				+2.7
1,687,397	+				+2.7
1,687,397	+				+2.0
1,687,397	+				+2.2
1,687,398	-				+2.1
1,687,398	-				+1.1
1,687,398	-				+1.6
1,687,398	-				+1.4
1,687,416	+				+0.8
1,687,416	+				+1.0
1,687,416	+				+0.9
1,687,416	+				+1.6
1,687,416	+				+1.2
1,687,416	+				+1.6
1,687,416	+				+2.0
1,687,416	+				+2.6
1,687,416	+				+2.7
1,687,416	+				+2.2
1,687,416	+				+1.3
1,687,416	+				+1.3
1,687,417	-				+1.6
1,687,417	-				+0.7
1,687,417	-				+1.1
1,687,417	-				+0.8
1,687,417	-				+1.8
1,687,417	-				+1.1
1,687,417	-				+1.1
1,687,426	+				+2.0
1,687,427	-				+0.2
1,687,429	+				+1.4
1,687,430	-		IAI47_07975	0.10	+2.2
1,687,430	-		IAI47_07975	0.10	+1.6
1,687,430	-		IAI47_07975	0.10	+0.2
1,687,430	-		IAI47_07975	0.10	+1.1
1,687,444	+		IAI47_07975	0.15	+0.3
1,687,444	+		IAI47_07975	0.15	+4.8
1,687,445	-		IAI47_07975	0.16	+1.6
1,687,445	-		IAI47_07975	0.16	+2.6
1,687,446	+		IAI47_07975	0.16	+0.5
1,687,447	-		IAI47_07975	0.16	+0.2
1,687,447	-		IAI47_07975	0.16	-0.7
1,687,447	-		IAI47_07975	0.16	-0.3
1,687,447	-		IAI47_07975	0.16	+0.1
1,687,487	-		IAI47_07975	0.31	+3.0
1,687,514	-		IAI47_07975	0.41	+1.2
1,687,519	+		IAI47_07975	0.43	+3.2
1,687,519	+		IAI47_07975	0.43	+0.4
1,687,520	-		IAI47_07975	0.43	+1.0
1,687,520	-		IAI47_07975	0.43	+1.5
1,687,527	-		IAI47_07975	0.46	+1.9
1,687,527	-		IAI47_07975	0.46	+2.1
1,687,649	+				+1.1
1,687,649	+				+1.5
1,687,649	+				+1.6
1,687,650	-				+1.7
1,687,650	-				-0.1
1,687,650	-				+1.4
1,687,655	+				+1.9
1,687,672	+				+1.3
1,687,672	+				+2.7
1,687,672	+				+1.7
1,687,672	+				+3.6
1,687,672	+				+0.7
1,687,672	+				+0.9
1,687,672	+				+2.0
1,687,672	+				+1.3
1,687,672	+				+2.2
1,687,672	+				+2.1
1,687,672	+				+4.2
1,687,672	+				+1.2
1,687,672	+				+1.8
1,687,673	-				+1.6
1,687,673	-				+1.2
1,687,673	-				+0.8
1,687,673	-				+1.9
1,687,673	-				+1.2
1,687,673	-				+0.2
1,687,673	-				+0.8
1,687,673	-				+1.6
1,687,673	-				+1.1
1,687,673	-				+2.1
1,687,673	-				+0.9
1,687,673	-				+1.7
1,687,673	-				+0.1
1,687,673	-				+1.1
1,687,673	-				-0.3
1,687,673	-				+1.5
1,687,673	-				+1.7
1,687,706	+				+2.8
1,687,706	+				+4.0
1,687,706	+				+0.7
1,687,707	-				+0.1
1,687,707	-				-0.2
1,687,707	-				-1.3
1,687,707	-				-0.2
1,687,707	-				-1.6
1,687,866	+		IAI47_07980	0.23	+0.9
1,687,876	-		IAI47_07980	0.24	+1.2
1,687,876	-		IAI47_07980	0.24	+1.7
1,687,916	+		IAI47_07980	0.30	+1.9
1,687,916	+		IAI47_07980	0.30	+1.5
1,687,916	+		IAI47_07980	0.30	+2.3
1,687,916	+		IAI47_07980	0.30	+3.2
1,687,917	-		IAI47_07980	0.30	+1.4
1,687,917	-		IAI47_07980	0.30	+1.5
1,687,917	-		IAI47_07980	0.30	+1.5
1,687,996	+		IAI47_07980	0.41	+1.1
1,688,025	+		IAI47_07980	0.45	+3.2
1,688,026	-		IAI47_07980	0.45	+1.4
1,688,026	-		IAI47_07980	0.45	-0.1
1,688,026	-		IAI47_07980	0.45	+1.4
1,688,052	+		IAI47_07980	0.48	+1.8
1,688,052	+		IAI47_07980	0.48	-0.1
1,688,053	-		IAI47_07980	0.48	+2.4
1,688,099	+		IAI47_07980	0.55	+2.1
1,688,099	+		IAI47_07980	0.55	+2.4
1,688,100	-		IAI47_07980	0.55	+1.8
1,688,100	-		IAI47_07980	0.55	+1.9
1,688,100	-		IAI47_07980	0.55	+0.5
1,688,137	-		IAI47_07980	0.60	+1.7
1,688,139	+		IAI47_07980	0.60	+1.7
1,688,139	+		IAI47_07980	0.60	+1.4
1,688,139	+		IAI47_07980	0.60	+1.7
1,688,139	+		IAI47_07980	0.60	+2.1
1,688,139	+		IAI47_07980	0.60	+2.0
1,688,140	-		IAI47_07980	0.60	+2.7
1,688,140	-		IAI47_07980	0.60	+1.5
1,688,173	+		IAI47_07980	0.65	+3.6
1,688,173	+		IAI47_07980	0.65	+1.2
1,688,173	+		IAI47_07980	0.65	+1.2
1,688,174	-		IAI47_07980	0.65	-1.3
1,688,174	-		IAI47_07980	0.65	+0.5
1,688,174	-		IAI47_07980	0.65	+1.7
1,688,278	-		IAI47_07980	0.79	+1.4
1,688,395	+				+3.1
1,688,396	-				+0.6
1,688,396	-				+1.1
1,688,410	+				+1.1
1,688,411	-				+0.2
1,688,411	-				+0.5
1,688,467	-				+0.6
1,688,467	-				+2.1
1,688,467	-				+0.8
1,688,549	+		IAI47_07985	0.30	+1.8
1,688,601	-		IAI47_07985	0.43	+0.2
1,688,632	-		IAI47_07985	0.51	+1.0
1,688,632	-		IAI47_07985	0.51	+1.1
1,688,648	+		IAI47_07985	0.55	+0.8
1,688,648	+		IAI47_07985	0.55	+1.6
1,688,648	+		IAI47_07985	0.55	+1.8
1,688,649	-		IAI47_07985	0.55	+0.7
1,688,721	+		IAI47_07985	0.73	+1.2
1,688,722	-		IAI47_07985	0.73	+0.5
1,688,722	-		IAI47_07985	0.73	+1.6
1,688,722	-		IAI47_07985	0.73	+1.4
1,688,726	+		IAI47_07985	0.74	+1.2
1,688,726	+		IAI47_07985	0.74	+2.7
1,688,726	+		IAI47_07985	0.74	+2.1
1,688,727	-		IAI47_07985	0.74	+0.8
1,688,727	-		IAI47_07985	0.74	+1.1
1,688,739	+		IAI47_07985	0.77	+1.0
1,688,739	+		IAI47_07985	0.77	+1.4
1,688,739	+		IAI47_07985	0.77	+1.0
1,688,740	-		IAI47_07985	0.78	+2.4
1,688,740	-		IAI47_07985	0.78	+1.1
1,688,762	+		IAI47_07985	0.83	+1.6
1,688,762	+		IAI47_07985	0.83	+1.7
1,688,828	+				+0.9
1,688,828	+				+5.6
1,688,828	+				+2.4
1,688,828	+				+1.2
1,688,829	-				+1.7
1,688,829	-				+0.6
1,688,840	+				+2.3
1,688,840	+				+1.7
1,688,859	+				+2.5
1,688,859	+				+1.8
1,688,859	+				+1.5
1,688,859	+				+1.9
1,688,859	+				+2.2
1,688,860	-				+0.9
1,688,860	-				+0.1
1,688,860	-				+0.9
1,688,860	-				+0.4
1,688,860	-				+0.3
1,688,860	-				+0.8
1,688,860	-				+1.9
1,688,900	+		IAI47_07990	0.15	+1.4
1,688,901	-		IAI47_07990	0.15	+2.7
1,688,901	-		IAI47_07990	0.15	+0.7
1,688,901	-		IAI47_07990	0.15	+0.6
1,688,958	+		IAI47_07990	0.29	+1.4
1,689,027	+		IAI47_07990	0.46	+3.3
1,689,027	+		IAI47_07990	0.46	+0.9
1,689,027	+		IAI47_07990	0.46	+0.6
1,689,082	-		IAI47_07990	0.60	+1.6
1,689,082	-		IAI47_07990	0.60	-0.1
1,689,082	-		IAI47_07990	0.60	+1.1
1,689,082	-		IAI47_07990	0.60	+2.1
1,689,216	+				+1.1
1,689,216	+				+1.1
1,689,216	+				+0.5
1,689,231	+				+2.1
1,689,231	+				+1.9
1,689,231	+				+1.5
1,689,232	-				+2.1
1,689,232	-				+0.2
1,689,232	-				+1.2
1,689,232	-				+0.9
1,689,232	-				+1.3
1,689,234	+				+2.5
1,689,234	+				+1.5
1,689,234	+				+0.6
1,689,234	+				+0.8
1,689,235	-				+1.9
1,689,235	-				+1.9
1,689,235	-				+1.8
1,689,309	+				+1.5
1,689,330	+				+1.9
1,689,330	+				+1.1
1,689,341	+		IAI47_07995	0.10	+1.1
1,689,342	-		IAI47_07995	0.10	+0.4
1,689,342	-		IAI47_07995	0.10	+0.2