Strain Fitness in Pantoea sp. MT58 around IAI47_05385

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,139,257	+		IAI47_05375	0.90	+0.7
1,139,258	-		IAI47_05375	0.90	+1.1
1,139,354	+				-0.7
1,139,354	+				+0.9
1,139,354	+				+0.7
1,139,354	+				+0.1
1,139,354	+				+1.1
1,139,355	-				+0.1
1,139,355	-				-0.4
1,139,355	-				-0.0
1,139,355	-				+0.3
1,139,355	-				-0.7
1,139,355	-				+3.5
1,139,358	+				-1.2
1,139,359	-				+0.7
1,139,373	-				-1.4
1,139,373	-				-0.5
1,139,392	+				-0.7
1,139,484	+		IAI47_05380	0.20	+0.2
1,139,484	+		IAI47_05380	0.20	-0.6
1,139,484	+				+0.8
1,139,484	+		IAI47_05380	0.20	+0.5
1,139,485	-		IAI47_05380	0.21	+1.1
1,139,485	-		IAI47_05380	0.21	+0.7
1,139,485	-		IAI47_05380	0.21	-1.4
1,139,485	-		IAI47_05380	0.21	-0.3
1,139,485	-		IAI47_05380	0.21	+0.2
1,139,616	+		IAI47_05380	0.41	+1.4
1,139,616	+		IAI47_05380	0.41	+0.6
1,139,639	+		IAI47_05380	0.45	-0.0
1,139,640	-		IAI47_05380	0.45	+0.5
1,139,693	+		IAI47_05380	0.53	-0.4
1,139,694	-		IAI47_05380	0.54	+0.7
1,139,706	+		IAI47_05380	0.55	+1.1
1,139,706	+		IAI47_05380	0.55	-3.0
1,139,730	-		IAI47_05380	0.59	-0.7
1,139,792	+		IAI47_05380	0.69	+0.2
1,139,792	+		IAI47_05380	0.69	-0.7
1,139,792	+		IAI47_05380	0.69	-0.5
1,139,792	+		IAI47_05380	0.69	+0.2
1,139,793	-		IAI47_05380	0.69	+0.1
1,139,795	+		IAI47_05380	0.70	+0.2
1,139,795	+		IAI47_05380	0.70	+0.7
1,139,795	+		IAI47_05380	0.70	+1.0
1,139,796	-		IAI47_05380	0.70	-0.9
1,139,796	-		IAI47_05380	0.70	+1.8
1,139,796	-		IAI47_05380	0.70	-0.7
1,139,796	-		IAI47_05380	0.70	+0.3
1,139,889	+		IAI47_05380	0.84	-1.3
1,139,889	+		IAI47_05380	0.84	-0.5
1,139,889	+		IAI47_05380	0.84	+0.1
1,139,889	+		IAI47_05380	0.84	-0.7
1,139,889	+		IAI47_05380	0.84	+0.6
1,139,889	+		IAI47_05380	0.84	-0.9
1,139,889	+		IAI47_05380	0.84	-1.0
1,139,889	+		IAI47_05380	0.84	+0.6
1,139,889	+		IAI47_05380	0.84	+0.4
1,139,889	+		IAI47_05380	0.84	+0.5
1,139,889	+		IAI47_05380	0.84	+0.3
1,139,889	+		IAI47_05380	0.84	+1.0
1,139,890	-		IAI47_05380	0.85	+0.3
1,139,890	-		IAI47_05380	0.85	-1.8
1,139,890	-		IAI47_05380	0.85	-1.6
1,139,890	-		IAI47_05380	0.85	+0.7
1,139,890	-		IAI47_05380	0.85	-0.4
1,139,890	-		IAI47_05380	0.85	-0.0
1,139,890	-		IAI47_05380	0.85	-1.1
1,139,890	-		IAI47_05380	0.85	-0.6
1,139,890	-		IAI47_05380	0.85	+0.3
1,139,890	-		IAI47_05380	0.85	+0.3
1,139,890	-		IAI47_05380	0.85	+0.6
1,139,890	-		IAI47_05380	0.85	-0.0
1,139,890	-		IAI47_05380	0.85	+0.7
1,139,890	-		IAI47_05380	0.85	-0.8
1,139,890	-		IAI47_05380	0.85	-1.3
1,139,890	-		IAI47_05380	0.85	+0.2
1,139,890	-		IAI47_05380	0.85	-0.5
1,139,890	-		IAI47_05380	0.85	+0.3
1,139,890	-		IAI47_05380	0.85	-0.5
1,139,895	+		IAI47_05380	0.85	+0.9
1,139,895	+		IAI47_05380	0.85	-0.7
1,139,895	+		IAI47_05380	0.85	-0.8
1,139,895	+		IAI47_05380	0.85	+0.7
1,139,895	+		IAI47_05380	0.85	+0.3
1,139,895	+		IAI47_05380	0.85	+0.3
1,139,896	-		IAI47_05380	0.85	+0.4
1,139,896	-		IAI47_05380	0.85	+0.2
1,139,896	-		IAI47_05380	0.85	+0.1
1,139,896	-		IAI47_05380	0.85	-0.3
1,139,943	-				-0.9
1,139,986	-				-1.7
1,139,996	+				-0.5
1,140,099	+				-1.7
1,140,099	+				+0.9
1,140,117	+				+0.4
1,140,150	+				+1.9
1,140,151	-				-0.1
1,140,151	-				-0.6
1,140,151	-				-1.2
1,140,152	+				+0.7
1,140,152	+				+0.3
1,140,154	+				-0.8
1,140,154	+				+0.8
1,140,154	+				+2.6
1,140,154	+				+2.7
1,140,154	+				+0.3
1,140,155	-				+2.8
1,140,155	-				-0.3
1,140,155	-				-0.2
1,140,155	-				+0.9
1,140,155	-				-1.5
1,140,163	+				+0.3
1,140,187	+				+1.3
1,140,187	+				+0.1
1,140,188	-				-0.8
1,140,247	+				+0.0
1,140,247	+				-0.7
1,140,247	+				-0.5
1,140,247	+				-0.9
1,140,247	+				+1.9
1,140,247	+				+1.3
1,140,248	-				+1.3
1,140,248	-				+0.7
1,140,248	-				+0.1
1,140,248	-				+0.5
1,140,248	-				+0.3
1,140,326	+				-0.7
1,140,326	+				+0.5
1,140,326	+				-1.4
1,140,326	+				-1.2
1,140,326	+				-0.2
1,140,327	-				+0.6
1,140,327	-				+0.2
1,140,327	-				+0.7
1,140,329	+				-0.6
1,140,329	+				-0.1
1,140,329	+				-2.9
1,140,329	+				+0.9
1,140,329	+				+0.7
1,140,329	+				+1.3
1,140,329	+				-1.5
1,140,329	+				+0.3
1,140,329	+				+1.3
1,140,330	-				-1.3
1,140,330	-				+0.7
1,140,330	-				+0.5
1,140,330	-				-1.2
1,140,336	+				+0.6
1,140,336	+				+0.4
1,140,336	+				+1.9
1,140,336	+				-3.0
1,140,336	+				+2.5
1,140,336	+				+0.8
1,140,337	-				-0.4
1,140,337	-				-0.7
1,140,337	-				-2.3
1,140,337	-				+2.0
1,140,337	-				-0.3
1,140,384	-		IAI47_05385	0.14	-0.6
1,140,423	-		IAI47_05385	0.18	+0.1
1,140,423	-		IAI47_05385	0.18	-1.1
1,140,423	-		IAI47_05385	0.18	+0.8
1,140,423	-		IAI47_05385	0.18	+0.3
1,140,498	+		IAI47_05385	0.25	+1.3
1,140,499	-		IAI47_05385	0.25	-0.2
1,140,499	-		IAI47_05385	0.25	+0.6
1,140,499	-		IAI47_05385	0.25	-0.1
1,140,499	-		IAI47_05385	0.25	-0.3
1,140,499	-		IAI47_05385	0.25	+0.3
1,140,533	+		IAI47_05385	0.29	-1.0
1,140,534	-		IAI47_05385	0.29	-0.4
1,140,594	+		IAI47_05385	0.35	+0.3
1,140,594	+		IAI47_05385	0.35	-0.7
1,140,594	+		IAI47_05385	0.35	-0.7
1,140,673	+		IAI47_05385	0.43	+0.9
1,140,673	+		IAI47_05385	0.43	-0.9
1,140,673	+		IAI47_05385	0.43	+0.3
1,140,673	+		IAI47_05385	0.43	-0.3
1,140,673	+		IAI47_05385	0.43	+0.5
1,140,674	-		IAI47_05385	0.43	-0.9
1,140,674	-		IAI47_05385	0.43	-0.2
1,140,674	-		IAI47_05385	0.43	+0.9
1,140,674	-		IAI47_05385	0.43	+1.6
1,140,717	+		IAI47_05385	0.47	+1.7
1,140,717	+		IAI47_05385	0.47	+1.1
1,140,723	+		IAI47_05385	0.47	+1.5
1,140,723	+		IAI47_05385	0.47	+0.1
1,140,723	+		IAI47_05385	0.47	+0.8
1,140,723	+		IAI47_05385	0.47	+0.9
1,140,723	+		IAI47_05385	0.47	-1.0
1,140,723	+		IAI47_05385	0.47	+0.4
1,140,723	+		IAI47_05385	0.47	-0.0
1,140,724	-		IAI47_05385	0.48	-0.3
1,140,724	-		IAI47_05385	0.48	-0.7
1,140,724	-		IAI47_05385	0.48	-0.8
1,140,724	-		IAI47_05385	0.48	+0.4
1,140,724	-		IAI47_05385	0.48	-0.7
1,140,724	-		IAI47_05385	0.48	-0.9
1,140,788	+		IAI47_05385	0.54	+0.1
1,140,788	+		IAI47_05385	0.54	-0.9
1,140,788	+		IAI47_05385	0.54	+0.5
1,140,788	+		IAI47_05385	0.54	+0.3
1,140,788	+		IAI47_05385	0.54	+0.5
1,140,789	-		IAI47_05385	0.54	-0.7
1,140,789	-		IAI47_05385	0.54	+1.3
1,140,885	-		IAI47_05385	0.63	-0.0
1,140,905	+		IAI47_05385	0.65	+0.8
1,140,905	+		IAI47_05385	0.65	+1.6
1,140,906	-		IAI47_05385	0.65	+0.7
1,140,906	-		IAI47_05385	0.65	-3.0
1,140,906	-		IAI47_05385	0.65	-0.0
1,140,906	-		IAI47_05385	0.65	+1.5
1,140,921	+		IAI47_05385	0.67	+0.0
1,140,936	+		IAI47_05385	0.68	+1.0
1,140,936	+		IAI47_05385	0.68	-0.0
1,140,936	+		IAI47_05385	0.68	+0.1
1,140,936	+		IAI47_05385	0.68	+1.6
1,140,936	+		IAI47_05385	0.68	+0.3
1,140,936	+		IAI47_05385	0.68	-1.4
1,140,937	-		IAI47_05385	0.69	+0.7
1,140,937	-		IAI47_05385	0.69	+0.6
1,140,937	-		IAI47_05385	0.69	+3.1
1,140,963	-		IAI47_05385	0.71	-0.2
1,140,995	+		IAI47_05385	0.74	-0.0
1,140,995	+		IAI47_05385	0.74	+1.3
1,140,995	+		IAI47_05385	0.74	-1.7
1,140,996	-		IAI47_05385	0.74	-0.4
1,140,996	-		IAI47_05385	0.74	-0.5
1,140,996	-		IAI47_05385	0.74	+0.2
1,141,047	+		IAI47_05385	0.79	+0.7
1,141,047	+		IAI47_05385	0.79	-1.1
1,141,047	+		IAI47_05385	0.79	+0.0
1,141,047	+		IAI47_05385	0.79	-0.9
1,141,047	+		IAI47_05385	0.79	-1.2
1,141,047	+		IAI47_05385	0.79	+1.3
1,141,047	+		IAI47_05385	0.79	+0.9
1,141,047	+		IAI47_05385	0.79	+0.9
1,141,048	-		IAI47_05385	0.79	+0.2
1,141,048	-		IAI47_05385	0.79	-0.9
1,141,053	+		IAI47_05385	0.80	+1.1
1,141,053	+		IAI47_05385	0.80	-0.8
1,141,053	+		IAI47_05385	0.80	+2.7
1,141,053	+		IAI47_05385	0.80	-0.7
1,141,053	+		IAI47_05385	0.80	+1.5
1,141,054	-		IAI47_05385	0.80	-0.9
1,141,054	-		IAI47_05385	0.80	-0.1
1,141,074	-		IAI47_05385	0.82	-1.4
1,141,074	-		IAI47_05385	0.82	-0.0
1,141,074	-		IAI47_05385	0.82	-0.1
1,141,074	-		IAI47_05385	0.82	+1.3
1,141,076	+		IAI47_05385	0.82	+0.4
1,141,076	+		IAI47_05385	0.82	+2.1
1,141,076	+		IAI47_05385	0.82	-0.0
1,141,076	+		IAI47_05385	0.82	+0.0
1,141,076	+		IAI47_05385	0.82	-1.3
1,141,076	+		IAI47_05385	0.82	-0.5
1,141,077	-		IAI47_05385	0.82	+0.7
1,141,080	-		IAI47_05385	0.83	+1.3
1,141,080	-		IAI47_05385	0.83	-1.4
1,141,080	-		IAI47_05385	0.83	-0.7
1,141,086	+		IAI47_05385	0.83	+0.1
1,141,086	+		IAI47_05385	0.83	+0.3
1,141,086	+		IAI47_05385	0.83	-0.3
1,141,086	+		IAI47_05385	0.83	+0.3
1,141,087	-		IAI47_05385	0.83	+0.2
1,141,087	-		IAI47_05385	0.83	-0.0
1,141,087	-		IAI47_05385	0.83	-0.6
1,141,087	-		IAI47_05385	0.83	-1.4
1,141,087	-		IAI47_05385	0.83	+0.9
1,141,087	-		IAI47_05385	0.83	+0.5
1,141,089	+		IAI47_05385	0.83	-0.2
1,141,089	+		IAI47_05385	0.83	-0.7
1,141,089	+		IAI47_05385	0.83	-1.5
1,141,089	+		IAI47_05385	0.83	-1.1
1,141,089	+		IAI47_05385	0.83	+0.4
1,141,090	-		IAI47_05385	0.84	+1.1
1,141,090	-		IAI47_05385	0.84	+0.5
1,141,090	-		IAI47_05385	0.84	+0.7
1,141,090	-		IAI47_05385	0.84	+1.3
1,141,090	-		IAI47_05385	0.84	-2.3
1,141,092	+		IAI47_05385	0.84	-0.9
1,141,092	+		IAI47_05385	0.84	-0.3
1,141,093	-		IAI47_05385	0.84	+1.6
1,141,093	-		IAI47_05385	0.84	-0.8
1,141,093	-		IAI47_05385	0.84	+0.5
1,141,103	+		IAI47_05385	0.85	-0.3
1,141,104	-		IAI47_05385	0.85	-1.3
1,141,192	+				+0.5
1,141,193	-				+0.2
1,141,193	-				-0.3
1,141,273	+				+0.7
1,141,274	-				-0.7
1,141,274	-				-0.7
1,141,281	+				-1.5
1,141,281	+				+0.3
1,141,282	-				+1.2
1,141,324	+				-0.2
1,141,324	+				-0.5
1,141,325	-				+0.3
1,141,325	-				-0.4
1,141,395	-		IAI47_05390	0.17	+0.1
1,141,412	-		IAI47_05390	0.19	+0.2
1,141,433	+		IAI47_05390	0.21	-0.5
1,141,433	+		IAI47_05390	0.21	-0.7
1,141,433	+		IAI47_05390	0.21	+2.5
1,141,434	-		IAI47_05390	0.21	+0.3
1,141,435	+		IAI47_05390	0.21	+2.0
1,141,435	+		IAI47_05390	0.21	-0.4
1,141,436	-		IAI47_05390	0.22	+2.5
1,141,436	-		IAI47_05390	0.22	+0.3
1,141,436	-		IAI47_05390	0.22	+0.3
1,141,474	+		IAI47_05390	0.26	+2.4
1,141,475	-		IAI47_05390	0.26	+0.7
1,141,475	-		IAI47_05390	0.26	+1.6
1,141,576	+		IAI47_05390	0.38	+1.0
1,141,668	-		IAI47_05390	0.49	+0.6
1,141,702	+		IAI47_05390	0.53	-1.9
1,141,722	+		IAI47_05390	0.56	-1.4
1,141,723	-		IAI47_05390	0.56	+0.3
1,141,732	-		IAI47_05390	0.57	+1.2
1,141,763	+		IAI47_05390	0.61	-0.9
1,141,764	-		IAI47_05390	0.61	+0.5
1,141,764	-		IAI47_05390	0.61	-1.1
1,141,764	-		IAI47_05390	0.61	-0.5
1,141,833	+		IAI47_05390	0.69	-0.4
1,141,833	+		IAI47_05390	0.69	-1.6
1,141,833	+		IAI47_05390	0.69	+0.7
1,141,833	+		IAI47_05390	0.69	+0.6
1,141,980	-		IAI47_05390	0.87	+0.1
1,142,044	+				+1.3
1,142,044	+				+0.2
1,142,053	-				-1.3
1,142,053	-				+0.7
1,142,053	-				-0.5
1,142,053	-				+0.1
1,142,087	+				+0.9
1,142,088	-				+0.8
1,142,160	+				+1.3
1,142,160	+				+1.2
1,142,160	+				+0.1
1,142,161	-				+0.8
1,142,168	+				+1.1