Strain Fitness in Pantoea sp. MT58 around IAI47_04855

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,017,841	-				+1.9
1,017,888	+				+0.9
1,017,913	+				+1.3
1,017,914	-				-0.7
1,017,917	+				-0.7
1,017,918	-				+1.1
1,017,918	-				+0.9
1,017,961	+				-0.4
1,017,972	+				-0.4
1,017,982	-				-0.1
1,017,990	+				+0.6
1,017,990	+				-0.5
1,017,991	-				-1.4
1,018,013	+				-0.2
1,018,013	+				-0.8
1,018,013	+				+0.0
1,018,013	+				-0.1
1,018,013	+				+0.6
1,018,018	+				+1.6
1,018,018	+				+0.0
1,018,034	+				+1.4
1,018,034	+				-0.9
1,018,071	+				-1.1
1,018,071	+				+1.1
1,018,071	+				+0.8
1,018,071	+				+0.3
1,018,089	+				+1.0
1,018,093	+				+0.7
1,018,093	+				+0.5
1,018,093	+				-0.6
1,018,093	+				+0.3
1,018,133	+				+0.0
1,018,133	+				+0.9
1,018,133	+				-0.1
1,018,173	+				+2.3
1,018,173	+				-0.3
1,018,173	+				+1.7
1,018,758	+				+0.9
1,018,786	+				-1.7
1,018,792	+				+0.9
1,018,976	+		IAI47_04855	0.24	+0.3
1,019,339	+		IAI47_04855	0.80	-2.0
1,019,359	+		IAI47_04855	0.83	-0.7
1,019,359	+		IAI47_04855	0.83	-0.7
1,019,359	+		IAI47_04855	0.83	+1.7
1,019,359	+		IAI47_04855	0.83	+2.0
1,019,360	-		IAI47_04855	0.83	+0.2
1,019,360	-		IAI47_04855	0.83	+1.5
1,019,360	-		IAI47_04855	0.83	-1.2
1,019,360	-		IAI47_04855	0.83	+0.8
1,019,360	-		IAI47_04855	0.83	+0.1
1,019,360	-		IAI47_04855	0.83	+0.1
1,019,453	+				+0.3
1,019,453	+				-0.5
1,019,453	+				-0.1
1,019,453	+				-2.8
1,019,453	+				-2.2
1,019,454	-				-3.1
1,019,470	+				+1.7
1,019,470	+				-0.2
1,019,471	-				+0.2
1,019,471	-				-0.4
1,019,487	+				+0.3
1,019,487	+				+0.3
1,019,487	+				-0.7
1,019,487	+				+0.3
1,019,487	+				-0.2
1,019,488	-				-0.7
1,019,496	-				+1.7
1,019,518	+				+2.8
1,019,518	+				-0.7
1,019,519	-				-0.7
1,019,519	-				+0.0
1,019,547	-				-1.8
1,019,563	+				-0.5
1,019,563	+				-2.1
1,019,613	+		IAI47_04860	0.15	+0.1
1,019,613	+		IAI47_04860	0.15	-0.2
1,019,613	+		IAI47_04860	0.15	+0.9
1,019,613	+		IAI47_04860	0.15	+0.3
1,019,614	-		IAI47_04860	0.15	+0.6
1,019,615	+		IAI47_04860	0.15	-0.7
1,019,615	+		IAI47_04860	0.15	+1.5
1,019,615	+		IAI47_04860	0.15	+0.3
1,019,615	+		IAI47_04860	0.15	-0.1
1,019,616	-		IAI47_04860	0.15	-0.3
1,019,616	-		IAI47_04860	0.15	-0.2
1,019,616	-		IAI47_04860	0.15	-0.1
1,019,695	+		IAI47_04860	0.23	+3.1
1,019,695	+		IAI47_04860	0.23	+0.1
1,019,696	-		IAI47_04860	0.23	+0.6
1,019,723	+		IAI47_04860	0.26	-0.7
1,019,748	+		IAI47_04860	0.29	-1.7
1,019,749	-		IAI47_04860	0.29	+0.3
1,019,749	-		IAI47_04860	0.29	-1.1
1,019,749	-		IAI47_04860	0.29	+0.6
1,019,749	-		IAI47_04860	0.29	-1.0
1,019,792	+		IAI47_04860	0.33	+0.9
1,019,792	+		IAI47_04860	0.33	-0.2
1,019,792	+		IAI47_04860	0.33	+0.3
1,019,792	+		IAI47_04860	0.33	+0.1
1,019,792	+		IAI47_04860	0.33	+1.3
1,019,793	-		IAI47_04860	0.34	+0.0
1,019,793	-		IAI47_04860	0.34	-0.6
1,019,793	-		IAI47_04860	0.34	-1.1
1,019,793	-		IAI47_04860	0.34	-0.7
1,019,793	-		IAI47_04860	0.34	-0.1
1,019,796	-		IAI47_04860	0.34	+0.3
1,019,850	+		IAI47_04860	0.39	+0.3
1,019,859	-		IAI47_04860	0.40	+0.3
1,019,861	+		IAI47_04860	0.41	-0.5
1,019,866	+		IAI47_04860	0.41	-1.8
1,019,866	+		IAI47_04860	0.41	-0.7
1,019,866	+		IAI47_04860	0.41	-0.3
1,019,866	+		IAI47_04860	0.41	-1.1
1,019,909	+		IAI47_04860	0.46	-1.1
1,019,940	+		IAI47_04860	0.49	-0.1
1,019,940	+		IAI47_04860	0.49	+0.3
1,019,940	+		IAI47_04860	0.49	+0.3
1,019,940	+		IAI47_04860	0.49	+0.8
1,019,940	+		IAI47_04860	0.49	+0.9
1,019,940	+		IAI47_04860	0.49	-0.7
1,019,940	+		IAI47_04860	0.49	-0.7
1,019,940	+		IAI47_04860	0.49	-0.8
1,019,940	+		IAI47_04860	0.49	+0.7
1,019,940	+		IAI47_04860	0.49	-0.7
1,019,940	+		IAI47_04860	0.49	+1.3
1,019,941	-		IAI47_04860	0.49	-0.8
1,019,941	-		IAI47_04860	0.49	+0.1
1,019,941	-		IAI47_04860	0.49	+0.1
1,019,941	-		IAI47_04860	0.49	+0.3
1,019,941	-		IAI47_04860	0.49	+0.3
1,019,941	-		IAI47_04860	0.49	-0.7
1,019,941	-		IAI47_04860	0.49	+2.8
1,019,941	-		IAI47_04860	0.49	-0.3
1,019,941	-		IAI47_04860	0.49	+0.8
1,019,941	-		IAI47_04860	0.49	+0.5
1,019,941	-		IAI47_04860	0.49	+1.0
1,019,941	-		IAI47_04860	0.49	+0.7
1,019,941	-		IAI47_04860	0.49	+1.7
1,019,941	-		IAI47_04860	0.49	-0.1
1,019,941	-		IAI47_04860	0.49	+0.3
1,020,059	+		IAI47_04860	0.61	+0.5
1,020,059	+		IAI47_04860	0.61	-2.0
1,020,059	+		IAI47_04860	0.61	+3.1
1,020,059	+		IAI47_04860	0.61	+2.5
1,020,059	+		IAI47_04860	0.61	-0.3
1,020,059	+		IAI47_04860	0.61	+1.0
1,020,060	-		IAI47_04860	0.61	+1.1
1,020,060	-		IAI47_04860	0.61	-0.1
1,020,104	-		IAI47_04860	0.66	-0.0
1,020,134	+		IAI47_04860	0.69	+1.2
1,020,134	+		IAI47_04860	0.69	-0.2
1,020,135	-		IAI47_04860	0.69	+2.3
1,020,135	-		IAI47_04860	0.69	+1.5
1,020,135	-		IAI47_04860	0.69	-0.2
1,020,135	-		IAI47_04860	0.69	+1.6
1,020,135	-		IAI47_04860	0.69	+0.1
1,020,154	+		IAI47_04860	0.71	-0.4
1,020,191	+		IAI47_04860	0.75	+1.8
1,020,191	+		IAI47_04860	0.75	+0.8
1,020,192	-		IAI47_04860	0.75	+0.3
1,020,215	+		IAI47_04860	0.78	+0.2
1,020,215	+		IAI47_04860	0.78	-0.5
1,020,231	+		IAI47_04860	0.79	-0.5
1,020,231	+		IAI47_04860	0.79	+0.1
1,020,232	-		IAI47_04860	0.79	+0.5
1,020,232	-		IAI47_04860	0.79	-1.2
1,020,248	+		IAI47_04860	0.81	-0.2
1,020,248	+		IAI47_04860	0.81	+0.3
1,020,249	-		IAI47_04860	0.81	-0.2
1,020,279	-		IAI47_04860	0.84	+1.5
1,020,317	+		IAI47_04860	0.88	+1.5
1,020,317	+		IAI47_04860	0.88	-1.0
1,020,318	-		IAI47_04860	0.88	-0.4
1,020,341	+				+0.3
1,020,341	+				-0.2
1,020,341	+				+1.2
1,020,342	-				+0.3
1,020,342	-				-0.2
1,020,393	-				-1.2
1,020,404	+				+0.8
1,020,404	+				+1.3
1,020,404	+				+0.3
1,020,405	-				-0.7
1,020,405	-				-0.7
1,020,405	-				+0.3
1,020,405	-				+1.1