Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03220 and IAI47_03225 are separated by 13 nucleotides IAI47_03225 and IAI47_03230 are separated by 49 nucleotides IAI47_03230 and IAI47_03235 are separated by 350 nucleotides
IAI47_03220: IAI47_03220 - TRAP transporter large permease, at 667,867 to 669,153
_03220
IAI47_03225: IAI47_03225 - TRAP transporter small permease, at 669,167 to 669,673
_03225
IAI47_03230: IAI47_03230 - TRAP transporter substrate-binding protein, at 669,723 to 670,694
_03230
IAI47_03235: IAI47_03235 - tol-pal system-associated acyl-CoA thioesterase, at 671,045 to 671,767
_03235
Position (kb) 669
670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 668.869 kb on - strand, within IAI47_03220 at 668.869 kb on - strand, within IAI47_03220 at 668.869 kb on - strand, within IAI47_03220 at 668.869 kb on - strand, within IAI47_03220 at 668.892 kb on + strand, within IAI47_03220 at 668.907 kb on + strand, within IAI47_03220 at 668.907 kb on + strand, within IAI47_03220 at 668.907 kb on + strand, within IAI47_03220 at 668.907 kb on + strand, within IAI47_03220 at 668.907 kb on + strand, within IAI47_03220 at 668.907 kb on + strand, within IAI47_03220 at 668.908 kb on - strand, within IAI47_03220 at 668.909 kb on + strand, within IAI47_03220 at 668.909 kb on + strand, within IAI47_03220 at 668.909 kb on + strand, within IAI47_03220 at 668.909 kb on + strand, within IAI47_03220 at 668.910 kb on - strand, within IAI47_03220 at 668.910 kb on - strand, within IAI47_03220 at 668.910 kb on - strand, within IAI47_03220 at 668.910 kb on - strand, within IAI47_03220 at 668.910 kb on - strand, within IAI47_03220 at 668.971 kb on - strand, within IAI47_03220 at 669.003 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.012 kb on + strand, within IAI47_03220 at 669.013 kb on - strand, within IAI47_03220 at 669.013 kb on - strand, within IAI47_03220 at 669.013 kb on - strand, within IAI47_03220 at 669.013 kb on - strand, within IAI47_03220 at 669.013 kb on - strand, within IAI47_03220 at 669.013 kb on - strand, within IAI47_03220 at 669.017 kb on - strand, within IAI47_03220 at 669.017 kb on - strand, within IAI47_03220 at 669.133 kb on + strand at 669.133 kb on + strand at 669.134 kb on - strand at 669.134 kb on - strand at 669.134 kb on - strand at 669.142 kb on + strand at 669.142 kb on + strand at 669.143 kb on - strand at 669.143 kb on - strand at 669.143 kb on - strand at 669.168 kb on + strand at 669.276 kb on + strand, within IAI47_03225 at 669.277 kb on - strand, within IAI47_03225 at 669.277 kb on - strand, within IAI47_03225 at 669.345 kb on + strand, within IAI47_03225 at 669.345 kb on + strand, within IAI47_03225 at 669.346 kb on - strand, within IAI47_03225 at 669.346 kb on - strand, within IAI47_03225 at 669.346 kb on - strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.457 kb on + strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.458 kb on - strand, within IAI47_03225 at 669.503 kb on + strand, within IAI47_03225 at 669.517 kb on + strand, within IAI47_03225 at 669.561 kb on + strand, within IAI47_03225 at 669.639 kb on + strand at 669.639 kb on + strand at 669.640 kb on - strand at 669.661 kb on + strand at 669.661 kb on + strand at 669.661 kb on + strand at 669.662 kb on - strand at 669.662 kb on - strand at 669.662 kb on - strand at 669.663 kb on + strand at 669.673 kb on + strand at 669.673 kb on + strand at 669.673 kb on + strand at 669.673 kb on + strand at 669.673 kb on + strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.674 kb on - strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.677 kb on + strand at 669.678 kb on - strand at 669.678 kb on - strand at 669.678 kb on - strand at 669.678 kb on - strand at 669.678 kb on - strand at 669.678 kb on - strand at 669.678 kb on - strand at 669.680 kb on + strand at 669.688 kb on + strand at 669.688 kb on + strand at 669.688 kb on + strand at 669.689 kb on - strand at 669.689 kb on - strand at 669.725 kb on - strand at 669.760 kb on + strand at 669.761 kb on - strand at 669.761 kb on - strand at 669.761 kb on - strand at 669.808 kb on + strand at 669.808 kb on + strand at 669.809 kb on - strand at 669.809 kb on - strand at 669.809 kb on - strand at 669.874 kb on + strand, within IAI47_03230 at 669.874 kb on + strand, within IAI47_03230 at 669.875 kb on - strand, within IAI47_03230 at 669.875 kb on - strand, within IAI47_03230 at 669.875 kb on - strand, within IAI47_03230 at 669.980 kb on + strand, within IAI47_03230 at 669.999 kb on - strand, within IAI47_03230 at 669.999 kb on - strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.018 kb on + strand, within IAI47_03230 at 670.019 kb on - strand, within IAI47_03230 at 670.019 kb on - strand, within IAI47_03230 at 670.019 kb on - strand, within IAI47_03230 at 670.021 kb on + strand, within IAI47_03230 at 670.021 kb on + strand, within IAI47_03230 at 670.021 kb on + strand, within IAI47_03230 at 670.021 kb on + strand, within IAI47_03230 at 670.022 kb on - strand, within IAI47_03230 at 670.022 kb on - strand, within IAI47_03230 at 670.022 kb on - strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.039 kb on + strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.040 kb on - strand, within IAI47_03230 at 670.058 kb on + strand, within IAI47_03230 at 670.058 kb on + strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.199 kb on + strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.206 kb on - strand, within IAI47_03230 at 670.301 kb on + strand, within IAI47_03230 at 670.329 kb on + strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.378 kb on + strand, within IAI47_03230 at 670.412 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.446 kb on - strand, within IAI47_03230 at 670.511 kb on - strand, within IAI47_03230 at 670.511 kb on - strand, within IAI47_03230 at 670.616 kb on + strand at 670.616 kb on + strand at 670.617 kb on - strand at 670.617 kb on - strand at 670.617 kb on - strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.695 kb on + strand at 670.695 kb on + strand at 670.696 kb on - strand at 670.715 kb on + strand at 670.715 kb on + strand at 670.715 kb on + strand at 670.716 kb on - strand at 670.716 kb on - strand at 670.737 kb on + strand at 670.766 kb on + strand at 670.766 kb on + strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.977 kb on + strand at 670.977 kb on + strand at 670.980 kb on + strand at 670.981 kb on - strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.076 kb on - strand at 671.076 kb on - strand at 671.090 kb on - strand at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.227 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.315 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.612 kb on + strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.639 kb on - strand, within IAI47_03235 at 671.642 kb on + strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 668,869 - IAI47_03220 0.78 +4.0 668,869 - IAI47_03220 0.78 -2.5 668,869 - IAI47_03220 0.78 -1.3 668,869 - IAI47_03220 0.78 -2.5 668,892 + IAI47_03220 0.80 -2.3 668,907 + IAI47_03220 0.81 +0.2 668,907 + IAI47_03220 0.81 +0.3 668,907 + IAI47_03220 0.81 -0.3 668,907 + IAI47_03220 0.81 -1.1 668,907 + IAI47_03220 0.81 +0.9 668,907 + IAI47_03220 0.81 -0.2 668,908 - IAI47_03220 0.81 +2.9 668,909 + IAI47_03220 0.81 +0.3 668,909 + IAI47_03220 0.81 -1.9 668,909 + IAI47_03220 0.81 +0.1 668,909 + IAI47_03220 0.81 +0.3 668,910 - IAI47_03220 0.81 -1.1 668,910 - IAI47_03220 0.81 +0.3 668,910 - IAI47_03220 0.81 -0.8 668,910 - IAI47_03220 0.81 -1.4 668,910 - IAI47_03220 0.81 -0.7 668,971 - IAI47_03220 0.86 +0.3 669,003 + IAI47_03220 0.88 +0.3 669,012 + IAI47_03220 0.89 +1.3 669,012 + IAI47_03220 0.89 -1.7 669,012 + IAI47_03220 0.89 +0.7 669,012 + IAI47_03220 0.89 +0.3 669,012 + IAI47_03220 0.89 +0.3 669,012 + IAI47_03220 0.89 +0.1 669,012 + IAI47_03220 0.89 -0.4 669,013 - IAI47_03220 0.89 +0.5 669,013 - IAI47_03220 0.89 -3.0 669,013 - IAI47_03220 0.89 -0.3 669,013 - IAI47_03220 0.89 +0.1 669,013 - IAI47_03220 0.89 -1.4 669,013 - IAI47_03220 0.89 -0.9 669,017 - IAI47_03220 0.89 -0.8 669,017 - IAI47_03220 0.89 -0.4 669,133 + +0.6 669,133 + -2.0 669,134 - +1.9 669,134 - -1.3 669,134 - -0.7 669,142 + +0.3 669,142 + +0.2 669,143 - +1.6 669,143 - +0.6 669,143 - -1.0 669,168 + -0.1 669,276 + IAI47_03225 0.21 +1.2 669,277 - IAI47_03225 0.22 +1.3 669,277 - IAI47_03225 0.22 -0.1 669,345 + IAI47_03225 0.35 +0.3 669,345 + IAI47_03225 0.35 +0.3 669,346 - IAI47_03225 0.35 +1.6 669,346 - IAI47_03225 0.35 -3.2 669,346 - IAI47_03225 0.35 -1.3 669,457 + IAI47_03225 0.57 +0.2 669,457 + IAI47_03225 0.57 -2.5 669,457 + IAI47_03225 0.57 +1.4 669,457 + IAI47_03225 0.57 +1.1 669,457 + IAI47_03225 0.57 +0.8 669,457 + IAI47_03225 0.57 +0.7 669,457 + IAI47_03225 0.57 +0.2 669,457 + IAI47_03225 0.57 +1.6 669,457 + IAI47_03225 0.57 -1.0 669,458 - IAI47_03225 0.57 +0.3 669,458 - IAI47_03225 0.57 +0.0 669,458 - IAI47_03225 0.57 -0.1 669,458 - IAI47_03225 0.57 +0.3 669,458 - IAI47_03225 0.57 +0.9 669,458 - IAI47_03225 0.57 -0.1 669,458 - IAI47_03225 0.57 +0.2 669,503 + IAI47_03225 0.66 -0.4 669,517 + IAI47_03225 0.69 +0.7 669,561 + IAI47_03225 0.78 -0.4 669,639 + +1.6 669,639 + -0.1 669,640 - +1.1 669,661 + +1.5 669,661 + +0.6 669,661 + -0.2 669,662 - +0.2 669,662 - +0.1 669,662 - +1.9 669,663 + -0.8 669,673 + -0.3 669,673 + -0.5 669,673 + -0.5 669,673 + -2.0 669,673 + -0.1 669,674 - +0.3 669,674 - -0.3 669,674 - -0.0 669,674 - -1.3 669,674 - +1.3 669,674 - -0.8 669,674 - +0.2 669,674 - -0.5 669,674 - -1.1 669,674 - -0.2 669,674 - +2.2 669,677 + +1.0 669,677 + +1.1 669,677 + +0.6 669,677 + -0.9 669,677 + -0.3 669,677 + -1.5 669,677 + -0.3 669,677 + +0.0 669,678 - -1.3 669,678 - -1.1 669,678 - -0.1 669,678 - +0.9 669,678 - -0.3 669,678 - +1.0 669,678 - +0.3 669,680 + +0.2 669,688 + -0.0 669,688 + +0.9 669,688 + +1.0 669,689 - -0.0 669,689 - -1.4 669,725 - +0.3 669,760 + +1.4 669,761 - -0.1 669,761 - -0.2 669,761 - -0.5 669,808 + +1.6 669,808 + -0.1 669,809 - +1.1 669,809 - +0.1 669,809 - -1.1 669,874 + IAI47_03230 0.16 -0.0 669,874 + IAI47_03230 0.16 -0.9 669,875 - IAI47_03230 0.16 +0.8 669,875 - IAI47_03230 0.16 +0.2 669,875 - IAI47_03230 0.16 -0.5 669,980 + IAI47_03230 0.26 +0.9 669,999 - IAI47_03230 0.28 +0.3 669,999 - IAI47_03230 0.28 -1.3 670,018 + IAI47_03230 0.30 -1.3 670,018 + IAI47_03230 0.30 +0.7 670,018 + IAI47_03230 0.30 -2.0 670,018 + IAI47_03230 0.30 -2.3 670,018 + IAI47_03230 0.30 -0.4 670,018 + IAI47_03230 0.30 -0.5 670,018 + IAI47_03230 0.30 -0.9 670,018 + IAI47_03230 0.30 -1.7 670,018 + IAI47_03230 0.30 +0.9 670,018 + IAI47_03230 0.30 +0.5 670,019 - IAI47_03230 0.30 +0.1 670,019 - IAI47_03230 0.30 +0.3 670,019 - IAI47_03230 0.30 -0.8 670,021 + IAI47_03230 0.31 +0.3 670,021 + IAI47_03230 0.31 +2.5 670,021 + IAI47_03230 0.31 -0.4 670,021 + IAI47_03230 0.31 -1.7 670,022 - IAI47_03230 0.31 -0.9 670,022 - IAI47_03230 0.31 +1.3 670,022 - IAI47_03230 0.31 -1.0 670,039 + IAI47_03230 0.33 +1.0 670,039 + IAI47_03230 0.33 -0.2 670,039 + IAI47_03230 0.33 +2.2 670,039 + IAI47_03230 0.33 +0.3 670,039 + IAI47_03230 0.33 -1.3 670,039 + IAI47_03230 0.33 +0.2 670,039 + IAI47_03230 0.33 +1.3 670,039 + IAI47_03230 0.33 -0.1 670,040 - IAI47_03230 0.33 +0.1 670,040 - IAI47_03230 0.33 +1.0 670,040 - IAI47_03230 0.33 +0.9 670,040 - IAI47_03230 0.33 -0.5 670,040 - IAI47_03230 0.33 +0.1 670,040 - IAI47_03230 0.33 +0.6 670,040 - IAI47_03230 0.33 +2.3 670,040 - IAI47_03230 0.33 -2.3 670,040 - IAI47_03230 0.33 +0.3 670,040 - IAI47_03230 0.33 -0.7 670,040 - IAI47_03230 0.33 -2.5 670,040 - IAI47_03230 0.33 -1.0 670,058 + IAI47_03230 0.34 -0.7 670,058 + IAI47_03230 0.34 +0.7 670,059 - IAI47_03230 0.35 -0.7 670,059 - IAI47_03230 0.35 -0.7 670,059 - IAI47_03230 0.35 +0.5 670,059 - IAI47_03230 0.35 -0.5 670,199 + IAI47_03230 0.49 +0.1 670,200 - IAI47_03230 0.49 -0.9 670,200 - IAI47_03230 0.49 -0.6 670,200 - IAI47_03230 0.49 -0.3 670,200 - IAI47_03230 0.49 -1.1 670,200 - IAI47_03230 0.49 -1.3 670,205 + IAI47_03230 0.50 +0.8 670,205 + IAI47_03230 0.50 +0.1 670,205 + IAI47_03230 0.50 +0.1 670,206 - IAI47_03230 0.50 +1.3 670,301 + IAI47_03230 0.59 -0.4 670,329 + IAI47_03230 0.62 -0.4 670,330 - IAI47_03230 0.62 -0.6 670,330 - IAI47_03230 0.62 -2.0 670,330 - 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IAI47_03235 0.26 -0.0 671,234 - IAI47_03235 0.26 +1.3 671,234 - IAI47_03235 0.26 +1.1 671,315 + IAI47_03235 0.37 -0.4 671,338 + IAI47_03235 0.41 -0.5 671,338 + IAI47_03235 0.41 +0.9 671,351 - IAI47_03235 0.42 +1.2 671,351 - IAI47_03235 0.42 -1.3 671,455 + IAI47_03235 0.57 +1.8 671,455 + IAI47_03235 0.57 +0.3 671,612 + IAI47_03235 0.78 +0.1 671,613 - IAI47_03235 0.79 +0.9 671,613 - IAI47_03235 0.79 +0.3 671,639 - IAI47_03235 0.82 +1.3 671,642 + IAI47_03235 0.83 -0.3 671,643 - IAI47_03235 0.83 +2.1 671,643 - IAI47_03235 0.83 -0.2 671,643 - IAI47_03235 0.83 -0.3
Or see this region's nucleotide sequence