Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01520 and IAI47_01525 are separated by 145 nucleotides IAI47_01525 and IAI47_01530 are separated by 26 nucleotides IAI47_01530 and IAI47_01535 overlap by 11 nucleotides IAI47_01535 and IAI47_01540 are separated by 232 nucleotides
IAI47_01520: IAI47_01520 - lysoplasmalogenase, at 332,412 to 333,041
_01520
IAI47_01525: IAI47_01525 - DUF2500 domain-containing protein, at 333,187 to 333,543
_01525
IAI47_01530: IAI47_01530 - DUF1145 family protein, at 333,570 to 333,842
_01530
IAI47_01535: IAI47_01535 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 333,832 to 334,431
_01535
IAI47_01540: IAI47_01540 - signal recognition particle-docking protein FtsY, at 334,664 to 336,364
_01540
Position (kb) 333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 332.884 kb on + strand, within IAI47_01520 at 332.884 kb on + strand, within IAI47_01520 at 332.884 kb on + strand, within IAI47_01520 at 332.884 kb on + strand, within IAI47_01520 at 332.885 kb on - strand, within IAI47_01520 at 332.951 kb on + strand, within IAI47_01520 at 332.952 kb on - strand, within IAI47_01520 at 332.952 kb on - strand, within IAI47_01520 at 332.983 kb on + strand at 332.983 kb on + strand at 332.998 kb on + strand at 332.999 kb on - strand at 332.999 kb on - strand at 333.057 kb on + strand at 333.084 kb on + strand at 333.084 kb on + strand at 333.085 kb on - strand at 333.085 kb on - strand at 333.098 kb on + strand at 333.099 kb on - strand at 333.141 kb on + strand at 333.141 kb on + strand at 333.141 kb on + strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.142 kb on - strand at 333.148 kb on + strand at 333.149 kb on - strand at 333.159 kb on + strand at 333.186 kb on + strand at 333.186 kb on + strand at 333.186 kb on + strand at 333.186 kb on + strand at 333.187 kb on - strand at 333.187 kb on - strand at 333.187 kb on - strand at 333.187 kb on - strand at 333.210 kb on + strand at 333.210 kb on + strand at 333.210 kb on + strand at 333.210 kb on + strand at 333.211 kb on - strand at 333.258 kb on + strand, within IAI47_01525 at 333.259 kb on - strand, within IAI47_01525 at 333.259 kb on - strand, within IAI47_01525 at 333.259 kb on - strand, within IAI47_01525 at 333.328 kb on - strand, within IAI47_01525 at 333.328 kb on - strand, within IAI47_01525 at 333.397 kb on + strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.398 kb on - strand, within IAI47_01525 at 333.463 kb on + strand, within IAI47_01525 at 333.464 kb on - strand, within IAI47_01525 at 333.519 kb on + strand at 333.519 kb on + strand at 333.520 kb on - strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.571 kb on + strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.572 kb on - strand at 333.746 kb on + strand, within IAI47_01530 at 333.747 kb on - strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.785 kb on + strand, within IAI47_01530 at 333.786 kb on - strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.833 kb on + strand at 333.833 kb on + strand at 333.837 kb on + strand at 333.837 kb on + strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.866 kb on + strand at 333.867 kb on - strand at 333.867 kb on - strand at 333.867 kb on - strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.962 kb on + strand, within IAI47_01535 at 333.962 kb on + strand, within IAI47_01535 at 333.962 kb on + strand, within IAI47_01535 at 333.963 kb on - strand, within IAI47_01535 at 333.963 kb on - strand, within IAI47_01535 at 334.050 kb on + strand, within IAI47_01535 at 334.051 kb on - strand, within IAI47_01535 at 334.093 kb on + strand, within IAI47_01535 at 334.093 kb on + strand, within IAI47_01535 at 334.186 kb on + strand, within IAI47_01535 at 334.191 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.293 kb on + strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.360 kb on - strand, within IAI47_01535 at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.425 kb on + strand at 334.425 kb on + strand at 334.426 kb on - strand at 334.451 kb on - strand at 334.451 kb on - strand at 334.451 kb on - strand at 334.462 kb on + strand at 334.462 kb on + strand at 334.463 kb on - strand at 334.463 kb on - strand at 334.495 kb on + strand at 334.496 kb on - strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.537 kb on + strand at 334.561 kb on + strand at 334.561 kb on + strand at 334.608 kb on + strand at 334.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 332,884 + IAI47_01520 0.75 +1.2 332,884 + IAI47_01520 0.75 -2.5 332,884 + IAI47_01520 0.75 +0.1 332,884 + IAI47_01520 0.75 +0.1 332,885 - IAI47_01520 0.75 +1.1 332,951 + IAI47_01520 0.86 +1.3 332,952 - IAI47_01520 0.86 +0.5 332,952 - IAI47_01520 0.86 +0.4 332,983 + +0.9 332,983 + -0.7 332,998 + -1.1 332,999 - +0.3 332,999 - -0.9 333,057 + -1.7 333,084 + -1.2 333,084 + -0.1 333,085 - -0.7 333,085 - +1.3 333,098 + -0.9 333,099 - -1.2 333,141 + +0.3 333,141 + -0.4 333,141 + +0.1 333,142 - -1.0 333,142 - +0.1 333,142 - -1.5 333,142 - -1.9 333,142 - -0.3 333,142 - +0.1 333,142 - -0.2 333,142 - +0.3 333,142 - -0.0 333,148 + -0.1 333,149 - -0.2 333,159 + +0.9 333,186 + -1.7 333,186 + -0.2 333,186 + -0.6 333,186 + -1.7 333,187 - -1.0 333,187 - +0.1 333,187 - +0.4 333,187 - +0.1 333,210 + -0.7 333,210 + -0.7 333,210 + -1.7 333,210 + +1.3 333,211 - -2.5 333,258 + IAI47_01525 0.20 -1.2 333,259 - IAI47_01525 0.20 +0.0 333,259 - IAI47_01525 0.20 -0.7 333,259 - IAI47_01525 0.20 -0.4 333,328 - IAI47_01525 0.39 -1.2 333,328 - IAI47_01525 0.39 -1.1 333,397 + IAI47_01525 0.59 +1.9 333,398 - IAI47_01525 0.59 +0.9 333,398 - IAI47_01525 0.59 -2.5 333,398 - IAI47_01525 0.59 +0.1 333,398 - IAI47_01525 0.59 -0.5 333,463 + IAI47_01525 0.77 +1.3 333,464 - IAI47_01525 0.78 -0.1 333,519 + -0.5 333,519 + -0.4 333,520 - +0.1 333,571 + -0.9 333,571 + +1.9 333,571 + +0.7 333,571 + +3.1 333,571 + -0.9 333,571 + +0.8 333,571 + -0.5 333,571 + -1.4 333,571 + +1.3 333,572 - +0.3 333,572 - -1.3 333,572 - -0.7 333,746 + IAI47_01530 0.64 -1.2 333,747 - IAI47_01530 0.65 -0.4 333,751 + IAI47_01530 0.66 -0.9 333,751 + IAI47_01530 0.66 +0.3 333,751 + IAI47_01530 0.66 +1.6 333,751 + IAI47_01530 0.66 -1.9 333,751 + IAI47_01530 0.66 +0.8 333,752 - IAI47_01530 0.67 -1.8 333,752 - IAI47_01530 0.67 -0.1 333,752 - IAI47_01530 0.67 -1.0 333,752 - IAI47_01530 0.67 +1.7 333,752 - IAI47_01530 0.67 +0.5 333,752 - IAI47_01530 0.67 -0.2 333,785 + IAI47_01530 0.79 -1.0 333,786 - IAI47_01530 0.79 +1.0 333,810 + IAI47_01530 0.88 -0.7 333,810 + IAI47_01530 0.88 +1.0 333,810 + IAI47_01530 0.88 -1.1 333,810 + IAI47_01530 0.88 -0.0 333,810 + IAI47_01530 0.88 -0.2 333,810 + IAI47_01530 0.88 +0.2 333,811 - IAI47_01530 0.88 +1.3 333,811 - IAI47_01530 0.88 +0.4 333,811 - IAI47_01530 0.88 -0.1 333,811 - IAI47_01530 0.88 +1.3 333,811 - IAI47_01530 0.88 -0.4 333,833 + -1.2 333,833 + +0.4 333,837 + -0.3 333,837 + +0.1 333,838 - +0.0 333,838 - -1.2 333,838 - -2.7 333,838 - -0.5 333,838 - -0.2 333,838 - +0.3 333,866 + +1.3 333,867 - +0.3 333,867 - +0.2 333,867 - -1.7 333,875 + +1.3 333,875 + +1.8 333,875 + +0.6 333,875 + +1.7 333,875 + -0.7 333,962 + IAI47_01535 0.22 -0.4 333,962 + IAI47_01535 0.22 +0.9 333,962 + IAI47_01535 0.22 -0.8 333,963 - IAI47_01535 0.22 -0.7 333,963 - IAI47_01535 0.22 -1.2 334,050 + IAI47_01535 0.36 +1.0 334,051 - IAI47_01535 0.36 -0.3 334,093 + IAI47_01535 0.43 +0.8 334,093 + IAI47_01535 0.43 -1.0 334,186 + IAI47_01535 0.59 +1.3 334,191 + IAI47_01535 0.60 +1.3 334,228 + IAI47_01535 0.66 -3.6 334,228 + IAI47_01535 0.66 +0.3 334,228 + IAI47_01535 0.66 +0.3 334,229 - IAI47_01535 0.66 +0.7 334,229 - IAI47_01535 0.66 -2.7 334,229 - IAI47_01535 0.66 -2.2 334,229 - IAI47_01535 0.66 +0.5 334,229 - IAI47_01535 0.66 +1.2 334,293 + IAI47_01535 0.77 -0.7 334,294 - IAI47_01535 0.77 -1.7 334,294 - IAI47_01535 0.77 -0.5 334,294 - IAI47_01535 0.77 +0.3 334,359 + IAI47_01535 0.88 +1.3 334,359 + IAI47_01535 0.88 +0.8 334,359 + IAI47_01535 0.88 +0.8 334,360 - IAI47_01535 0.88 +1.1 334,410 + +0.6 334,410 + +1.9 334,410 + -1.2 334,410 + +1.8 334,410 + +1.3 334,425 + +2.3 334,425 + -2.1 334,426 - +0.1 334,451 - -0.0 334,451 - -0.6 334,451 - +0.6 334,462 + +0.3 334,462 + +1.9 334,463 - -0.6 334,463 - +1.1 334,495 + -1.2 334,496 - -0.1 334,532 + -0.8 334,532 + -1.7 334,532 + +2.1 334,537 + +0.3 334,561 + +0.5 334,561 + +0.3 334,608 + -0.7 334,608 + +0.1
Or see this region's nucleotide sequence