Strain Fitness in Pantoea sp. MT58 around IAI47_19210

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
68,368	+				-1.3
68,368	+				+0.8
68,369	-				-0.2
68,395	+				-0.5
68,396	-				+0.2
68,434	+				-1.8
68,434	+				+0.8
68,434	+				+0.6
68,435	-				-0.4
68,435	-				-0.0
68,435	-				-0.3
68,435	-				-0.3
68,435	-				-3.6
68,435	-				+0.7
68,435	-				-2.1
68,475	+				+1.6
68,475	+				-0.3
68,475	+				+0.6
68,476	-				+2.0
68,539	+		IAI47_19205	0.13	-0.8
68,539	+		IAI47_19205	0.13	-0.0
68,540	-		IAI47_19205	0.13	+0.5
68,610	+		IAI47_19205	0.22	-1.6
68,610	+		IAI47_19205	0.22	+0.2
68,610	+		IAI47_19205	0.22	-2.3
68,610	+		IAI47_19205	0.22	-0.9
68,611	-		IAI47_19205	0.22	-0.2
68,614	+		IAI47_19205	0.22	-0.2
68,614	+		IAI47_19205	0.22	+0.1
68,615	-		IAI47_19205	0.23	+0.5
68,639	+		IAI47_19205	0.26	-0.5
68,639	+		IAI47_19205	0.26	+2.8
68,639	+		IAI47_19205	0.26	-3.3
68,639	+		IAI47_19205	0.26	-2.1
68,639	+		IAI47_19205	0.26	+1.4
68,639	+		IAI47_19205	0.26	-1.2
68,639	+		IAI47_19205	0.26	-0.2
68,639	+		IAI47_19205	0.26	-0.2
68,639	+		IAI47_19205	0.26	+1.6
68,639	+		IAI47_19205	0.26	-0.3
68,640	-		IAI47_19205	0.26	-1.5
68,640	-		IAI47_19205	0.26	+0.2
68,640	-		IAI47_19205	0.26	-1.0
68,650	+		IAI47_19205	0.27	-1.3
68,650	+		IAI47_19205	0.27	-0.2
68,651	-		IAI47_19205	0.27	-0.8
68,700	+		IAI47_19205	0.33	-1.1
68,700	+		IAI47_19205	0.33	-1.0
68,700	+		IAI47_19205	0.33	+0.2
68,701	-		IAI47_19205	0.33	+0.0
68,701	-		IAI47_19205	0.33	+1.5
68,753	+		IAI47_19205	0.40	-1.1
68,754	-		IAI47_19205	0.40	+0.7
68,754	-		IAI47_19205	0.40	+1.7
68,757	+		IAI47_19205	0.41	-1.8
68,757	+		IAI47_19205	0.41	-1.3
68,757	+		IAI47_19205	0.41	-1.8
68,757	+		IAI47_19205	0.41	+0.0
68,757	+		IAI47_19205	0.41	+0.2
68,758	-		IAI47_19205	0.41	+0.2
68,758	-		IAI47_19205	0.41	+0.8
68,758	-		IAI47_19205	0.41	-0.8
68,766	+		IAI47_19205	0.42	-0.1
68,766	+		IAI47_19205	0.42	-1.6
68,766	+		IAI47_19205	0.42	-0.6
68,766	+		IAI47_19205	0.42	+1.6
68,845	-		IAI47_19205	0.52	+1.0
68,845	-		IAI47_19205	0.52	+1.0
68,870	+		IAI47_19205	0.55	-1.8
68,871	-		IAI47_19205	0.55	-0.6
68,878	+		IAI47_19205	0.56	-1.3
68,879	-		IAI47_19205	0.56	+2.4
68,882	+		IAI47_19205	0.56	+0.1
68,882	+		IAI47_19205	0.56	+1.2
68,883	-		IAI47_19205	0.57	+0.8
68,932	+		IAI47_19205	0.63	+0.0
68,932	+		IAI47_19205	0.63	+0.8
68,932	+		IAI47_19205	0.63	+0.7
68,933	-		IAI47_19205	0.63	-1.1
68,933	-		IAI47_19205	0.63	+1.5
68,933	-		IAI47_19205	0.63	+3.0
68,933	-		IAI47_19205	0.63	-1.1
68,933	-		IAI47_19205	0.63	+0.9
68,934	+		IAI47_19205	0.63	+0.6
68,934	+		IAI47_19205	0.63	+0.2
68,934	+		IAI47_19205	0.63	-1.1
68,934	+		IAI47_19205	0.63	-0.5
68,934	+		IAI47_19205	0.63	+0.2
68,935	-		IAI47_19205	0.63	+0.2
68,935	-		IAI47_19205	0.63	-0.6
68,935	-		IAI47_19205	0.63	-2.3
68,936	+		IAI47_19205	0.63	-0.8
68,936	+		IAI47_19205	0.63	-1.6
68,936	+		IAI47_19205	0.63	-0.1
68,936	+		IAI47_19205	0.63	-1.3
68,936	+		IAI47_19205	0.63	-0.1
68,936	+		IAI47_19205	0.63	+2.1
68,936	+		IAI47_19205	0.63	-0.3
68,936	+		IAI47_19205	0.63	+1.7
68,936	+		IAI47_19205	0.63	-0.9
68,937	-		IAI47_19205	0.63	-2.8
68,937	-		IAI47_19205	0.63	+0.7
68,937	-		IAI47_19205	0.63	-1.8
68,937	-		IAI47_19205	0.63	-1.6
68,937	-		IAI47_19205	0.63	-1.3
68,937	-		IAI47_19205	0.63	-1.3
68,937	-		IAI47_19205	0.63	-2.1
68,937	-		IAI47_19205	0.63	-1.3
68,937	-		IAI47_19205	0.63	+0.7
68,948	+		IAI47_19205	0.65	-1.8
68,977	-		IAI47_19205	0.69	+0.2
68,996	+		IAI47_19205	0.71	+0.7
68,996	+		IAI47_19205	0.71	-0.3
68,996	+		IAI47_19205	0.71	+0.4
68,997	-		IAI47_19205	0.71	-0.0
68,997	-		IAI47_19205	0.71	+0.1
69,086	+		IAI47_19205	0.82	+1.1
69,130	+		IAI47_19205	0.88	-1.0
69,149	-				+0.4
69,164	+				-1.1
69,164	+				-1.0
69,221	+				-0.6
69,221	+				+0.1
69,222	-				-0.5
69,242	-				+1.7
69,285	+				+0.2
69,285	+				+2.1
69,285	+				+1.0
69,286	-				-0.3
69,289	+				+1.8
69,296	+				+0.6
69,297	-				-0.5
69,308	+				-1.3
69,308	+				-1.8
69,309	-				-0.6
69,309	-				+0.7
69,309	-				-0.4
69,309	-				-0.8
69,318	+				-0.3
69,318	+				-1.4
69,318	+				+1.6
69,319	-				-0.2
69,403	+		IAI47_19210	0.18	+1.5
69,403	+		IAI47_19210	0.18	+0.8
69,404	-		IAI47_19210	0.18	+0.2
69,404	-		IAI47_19210	0.18	-0.8
69,454	+		IAI47_19210	0.38	+0.1
69,454	+		IAI47_19210	0.38	+0.2
69,454	+		IAI47_19210	0.38	-0.5
69,454	+		IAI47_19210	0.38	-0.1
69,455	-		IAI47_19210	0.39	-1.4
69,455	-		IAI47_19210	0.39	+1.6
69,455	-		IAI47_19210	0.39	-0.8
69,455	-		IAI47_19210	0.39	+1.0
69,456	+		IAI47_19210	0.39	+1.0
69,456	+		IAI47_19210	0.39	-1.3
69,456	+		IAI47_19210	0.39	-0.6
69,456	+		IAI47_19210	0.39	-0.8
69,457	-		IAI47_19210	0.39	+0.5
69,457	-		IAI47_19210	0.39	-0.2
69,481	+		IAI47_19210	0.49	-1.6
69,481	+		IAI47_19210	0.49	-2.9
69,481	+		IAI47_19210	0.49	-1.3
69,481	+		IAI47_19210	0.49	+1.2
69,481	+		IAI47_19210	0.49	+0.2
69,482	-		IAI47_19210	0.49	+0.4
69,482	-		IAI47_19210	0.49	-1.0
69,482	-		IAI47_19210	0.49	+0.2
69,482	-		IAI47_19210	0.49	+1.4
69,482	-		IAI47_19210	0.49	+0.6
69,482	-		IAI47_19210	0.49	+0.7
69,544	-		IAI47_19210	0.74	+1.1
69,544	-		IAI47_19210	0.74	-0.5
69,544	-		IAI47_19210	0.74	+0.4
69,544	-		IAI47_19210	0.74	+1.0
69,544	-		IAI47_19210	0.74	-0.5
69,559	+		IAI47_19210	0.80	+0.2
69,560	-		IAI47_19210	0.81	-1.8
69,560	-		IAI47_19210	0.81	+0.2
69,632	+				-0.3
69,633	-				+1.2
69,729	+				+1.2
69,729	+				+1.7
69,729	+				+0.4
69,729	+				-0.8
69,729	+				-1.9
69,730	-				-1.2
69,730	-				+0.8
69,730	-				+1.2
69,730	-				+1.5
69,730	-				-2.1
69,730	-				+0.0
69,735	+				-0.2
69,735	+				+1.8
69,735	+				-1.3
69,735	+				+0.4
69,735	+				+0.6
69,735	+				-0.9
69,735	+				+0.1
69,735	+				+1.8
69,735	+				+0.5
69,735	+				-0.8
69,736	-				+0.2
69,736	-				+0.9
69,736	-				+0.2
69,736	-				+1.2
69,736	-				-0.0
69,736	-				+0.5
69,736	-				-1.0
69,736	-				+0.2
69,737	+				-0.8
69,738	-				-1.1
69,738	-				+0.8
69,738	-				+0.0
69,752	+				+0.4
69,753	-				-0.5
69,753	-				+0.8
69,813	-				-0.6
69,836	+				-0.5
69,836	+				+0.8
69,841	+				-1.8
69,841	+				-0.1
69,842	-				-0.8
69,842	-				+1.6
69,842	-				-0.3
69,851	+				+0.2
69,909	-				-0.5
69,918	+				+0.4
69,918	+				+0.2
69,919	-				-0.1
69,940	-				-1.8
69,945	+				-1.3
69,945	+				-0.2
69,945	+				-1.4
69,946	-				-1.6
69,946	-				-1.8
69,988	+				-3.1
69,988	+				-1.1
69,989	-				-1.0
69,989	-				-0.2
70,108	+		IAI47_19215	0.18	-1.3
70,108	+		IAI47_19215	0.18	-0.3
70,109	-		IAI47_19215	0.18	-1.2
70,109	-		IAI47_19215	0.18	-1.6
70,109	-		IAI47_19215	0.18	-2.1
70,109	-		IAI47_19215	0.18	-2.9
70,109	-		IAI47_19215	0.18	-0.5
70,178	-		IAI47_19215	0.25	-0.4
70,178	-		IAI47_19215	0.25	-2.6
70,178	-		IAI47_19215	0.25	+0.2
70,178	-		IAI47_19215	0.25	-0.2
70,208	+		IAI47_19215	0.28	-3.7
70,209	-		IAI47_19215	0.28	-2.1
70,261	-		IAI47_19215	0.34	-1.0
70,270	+		IAI47_19215	0.35	-2.2
70,271	-		IAI47_19215	0.35	+0.2
70,271	-		IAI47_19215	0.35	-1.3
70,282	+		IAI47_19215	0.36	+1.6
70,283	-		IAI47_19215	0.36	-0.6
70,325	+		IAI47_19215	0.40	-0.8
70,326	-		IAI47_19215	0.40	-2.1
70,326	-		IAI47_19215	0.40	-0.5
70,326	-		IAI47_19215	0.40	-1.6
70,328	+		IAI47_19215	0.41	-0.4
70,329	-		IAI47_19215	0.41	-0.9
70,403	+		IAI47_19215	0.48	-0.3
70,403	+		IAI47_19215	0.48	-0.3
70,473	+		IAI47_19215	0.55	+0.2
70,473	+		IAI47_19215	0.55	-1.8
70,473	+		IAI47_19215	0.55	-2.1
70,473	+		IAI47_19215	0.55	-0.8
70,473	+		IAI47_19215	0.55	-1.8
70,473	+		IAI47_19215	0.55	+0.2
70,473	+		IAI47_19215	0.55	-2.1
70,473	+		IAI47_19215	0.55	-1.6
70,473	+		IAI47_19215	0.55	-0.2
70,473	+		IAI47_19215	0.55	+1.1
70,473	+		IAI47_19215	0.55	+0.5
70,473	+		IAI47_19215	0.55	-0.3
70,473	+		IAI47_19215	0.55	-1.8
70,473	+		IAI47_19215	0.55	-1.1
70,474	-		IAI47_19215	0.56	-1.6
70,474	-		IAI47_19215	0.56	-2.1
70,474	-		IAI47_19215	0.56	+1.2
70,474	-		IAI47_19215	0.56	+2.0
70,474	-		IAI47_19215	0.56	-1.3
70,474	-		IAI47_19215	0.56	-1.6
70,474	-		IAI47_19215	0.56	-0.8
70,474	-		IAI47_19215	0.56	-2.7
70,474	-		IAI47_19215	0.56	-2.6
70,474	-		IAI47_19215	0.56	-1.3
70,474	-		IAI47_19215	0.56	-0.9
70,474	-		IAI47_19215	0.56	+0.2
70,474	-		IAI47_19215	0.56	-1.0
70,474	-		IAI47_19215	0.56	-2.2
70,474	-		IAI47_19215	0.56	-1.8
70,474	-		IAI47_19215	0.56	-2.8
70,474	-		IAI47_19215	0.56	+1.1
70,474	-		IAI47_19215	0.56	-1.3
70,477	+		IAI47_19215	0.56	+1.1
70,477	+		IAI47_19215	0.56	+1.2
70,477	+		IAI47_19215	0.56	-0.0
70,477	+		IAI47_19215	0.56	+1.0
70,477	+		IAI47_19215	0.56	-2.3
70,478	-		IAI47_19215	0.56	-0.5
70,478	-		IAI47_19215	0.56	-1.1
70,478	-		IAI47_19215	0.56	-1.6
70,478	-		IAI47_19215	0.56	-0.2
70,478	-		IAI47_19215	0.56	-3.7
70,478	-		IAI47_19215	0.56	-0.3
70,478	-		IAI47_19215	0.56	-2.1
70,478	-		IAI47_19215	0.56	-2.1
70,478	-		IAI47_19215	0.56	-1.1
70,478	-		IAI47_19215	0.56	-1.3
70,478	-		IAI47_19215	0.56	+0.8
70,555	+		IAI47_19215	0.64	+1.1
70,555	+		IAI47_19215	0.64	-2.6
70,555	+		IAI47_19215	0.64	-1.8
70,555	+		IAI47_19215	0.64	-1.9
70,556	-		IAI47_19215	0.64	-2.1
70,558	+		IAI47_19215	0.64	-2.8
70,558	+		IAI47_19215	0.64	-0.4
70,558	+		IAI47_19215	0.64	-1.0
70,558	+		IAI47_19215	0.64	-2.8
70,559	-		IAI47_19215	0.64	+1.2