Strain Fitness in Pantoea sp. MT58 around IAI47_18695

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,986,572	+		IAI47_18690	0.52	-0.0
3,986,573	-		IAI47_18690	0.52	-0.1
3,986,647	+		IAI47_18690	0.57	+0.8
3,986,647	+		IAI47_18690	0.57	-1.6
3,986,647	+		IAI47_18690	0.57	-1.1
3,986,647	+		IAI47_18690	0.57	-0.0
3,986,647	+		IAI47_18690	0.57	-0.6
3,986,648	-		IAI47_18690	0.57	+1.3
3,986,648	-		IAI47_18690	0.57	+0.2
3,986,648	-		IAI47_18690	0.57	+0.1
3,986,648	-		IAI47_18690	0.57	+0.1
3,986,687	+		IAI47_18690	0.59	+1.2
3,986,687	+		IAI47_18690	0.59	+0.5
3,986,698	-		IAI47_18690	0.60	+1.1
3,986,698	-		IAI47_18690	0.60	-0.0
3,986,698	-		IAI47_18690	0.60	+0.7
3,986,698	-		IAI47_18690	0.60	+0.6
3,986,704	+		IAI47_18690	0.60	+1.3
3,986,704	+		IAI47_18690	0.60	+3.0
3,986,704	+		IAI47_18690	0.60	-0.6
3,986,704	+		IAI47_18690	0.60	-0.3
3,986,704	+		IAI47_18690	0.60	-0.0
3,986,704	+		IAI47_18690	0.60	-0.1
3,986,704	+		IAI47_18690	0.60	-0.5
3,986,704	+		IAI47_18690	0.60	+0.7
3,986,704	+		IAI47_18690	0.60	-0.6
3,986,704	+		IAI47_18690	0.60	-1.4
3,986,704	+		IAI47_18690	0.60	+0.2
3,986,705	-		IAI47_18690	0.60	+0.4
3,986,705	-		IAI47_18690	0.60	-0.0
3,986,705	-		IAI47_18690	0.60	-0.8
3,986,705	-		IAI47_18690	0.60	+0.0
3,986,705	-		IAI47_18690	0.60	+0.9
3,986,705	-		IAI47_18690	0.60	-1.2
3,986,705	-		IAI47_18690	0.60	-0.6
3,986,705	-		IAI47_18690	0.60	+0.0
3,986,705	-		IAI47_18690	0.60	-0.8
3,986,705	-		IAI47_18690	0.60	-0.9
3,986,706	+		IAI47_18690	0.61	+0.4
3,986,706	+		IAI47_18690	0.61	+1.1
3,986,707	-		IAI47_18690	0.61	+1.2
3,986,788	+		IAI47_18690	0.66	+0.2
3,986,788	+		IAI47_18690	0.66	-1.2
3,986,788	+		IAI47_18690	0.66	+1.4
3,986,788	+		IAI47_18690	0.66	+1.6
3,986,788	+		IAI47_18690	0.66	-0.0
3,986,788	+		IAI47_18690	0.66	-1.2
3,986,788	+		IAI47_18690	0.66	+2.7
3,986,789	-		IAI47_18690	0.66	+0.4
3,986,789	-		IAI47_18690	0.66	-0.6
3,986,789	-		IAI47_18690	0.66	-1.3
3,986,789	-		IAI47_18690	0.66	-0.3
3,986,789	-		IAI47_18690	0.66	-0.2
3,986,789	-		IAI47_18690	0.66	-1.4
3,986,789	-		IAI47_18690	0.66	+0.8
3,986,789	-		IAI47_18690	0.66	+0.4
3,986,789	-		IAI47_18690	0.66	+0.4
3,986,814	+		IAI47_18690	0.67	+2.7
3,986,814	+		IAI47_18690	0.67	-0.4
3,986,815	-		IAI47_18690	0.67	+2.0
3,986,838	+		IAI47_18690	0.69	-0.8
3,986,838	+		IAI47_18690	0.69	-0.4
3,986,839	-		IAI47_18690	0.69	-1.4
3,986,839	-		IAI47_18690	0.69	-0.6
3,986,839	-		IAI47_18690	0.69	+0.2
3,986,842	+		IAI47_18690	0.69	+1.7
3,986,842	+		IAI47_18690	0.69	-0.5
3,986,842	+		IAI47_18690	0.69	+1.6
3,986,842	+		IAI47_18690	0.69	+1.0
3,986,842	+		IAI47_18690	0.69	+1.0
3,986,842	+		IAI47_18690	0.69	-1.6
3,986,842	+		IAI47_18690	0.69	+0.5
3,986,842	+		IAI47_18690	0.69	-0.9
3,986,842	+		IAI47_18690	0.69	-3.6
3,986,842	+		IAI47_18690	0.69	+1.8
3,986,843	-		IAI47_18690	0.69	+0.5
3,986,843	-		IAI47_18690	0.69	+0.4
3,986,843	-		IAI47_18690	0.69	+0.1
3,986,934	+		IAI47_18690	0.75	-0.6
3,986,934	+		IAI47_18690	0.75	+0.8
3,986,934	+		IAI47_18690	0.75	+0.1
3,986,934	+		IAI47_18690	0.75	-1.3
3,986,934	+		IAI47_18690	0.75	+2.8
3,986,935	-		IAI47_18690	0.75	+1.1
3,986,935	-		IAI47_18690	0.75	-0.2
3,986,935	-		IAI47_18690	0.75	+2.4
3,987,078	+		IAI47_18690	0.84	+0.4
3,987,078	+		IAI47_18690	0.84	-0.6
3,987,078	+		IAI47_18690	0.84	-1.1
3,987,078	+		IAI47_18690	0.84	+0.4
3,987,079	-		IAI47_18690	0.84	+1.1
3,987,079	-		IAI47_18690	0.84	+0.4
3,987,079	-		IAI47_18690	0.84	-0.7
3,987,134	+		IAI47_18690	0.87	+0.9
3,987,135	-		IAI47_18690	0.87	-0.6
3,987,177	+				-0.6
3,987,177	+				+0.8
3,987,178	-				-0.7
3,987,178	-				+1.4
3,987,178	-				-0.5
3,987,216	-				-0.5
3,987,239	-				+1.2
3,987,239	-				+0.2
3,987,239	-				-0.6
3,987,263	+				-1.6
3,987,264	-				-0.3
3,987,286	+				-0.1
3,987,286	+				-0.8
3,987,286	+				+1.0
3,987,286	+				+0.1
3,987,286	+				-1.2
3,987,286	+				-0.8
3,987,286	+				+0.8
3,987,286	+				-0.6
3,987,287	-				-0.7
3,987,287	-				-0.1
3,987,287	-				-0.9
3,987,287	-				+2.2
3,987,287	-				+0.1
3,987,287	-				-0.9
3,987,287	-				+1.1
3,987,287	-				+1.2
3,987,287	-				-0.9
3,987,288	+				-0.2
3,987,288	+				-2.6
3,987,288	+				-1.2
3,987,334	+				+3.0
3,987,334	+				-0.2
3,987,402	+				-1.0
3,987,403	-				+0.4
3,987,434	+				-0.7
3,987,435	-				-0.4
3,987,435	-				-1.4
3,987,447	+				+0.2
3,987,447	+				-0.1
3,987,504	+				+0.4
3,987,504	+				+0.1
3,987,504	+				+0.6
3,987,505	-				-0.0
3,987,505	-				-0.6
3,987,505	-				-0.9
3,987,505	-				-0.0
3,987,505	-				+0.1
3,987,511	+				-1.1
3,987,512	-				-0.4
3,987,522	+				+1.0
3,987,523	-				+0.7
3,987,523	-				+0.1
3,987,540	+				+0.5
3,987,540	+				-0.0
3,987,540	+				+0.6
3,987,540	+				-1.2
3,987,540	+				-1.6
3,987,540	+				+0.4
3,987,541	-				+0.9
3,987,541	-				+1.4
3,987,541	-				+0.8
3,987,541	-				+0.1
3,987,541	-				-0.1
3,987,541	-				+2.0
3,987,541	-				-0.5
3,987,543	+				+0.4
3,987,543	+				+1.1
3,987,543	+				+0.1
3,987,544	-				+0.4
3,987,577	+				+2.5
3,987,577	+				-0.6
3,987,577	+				-0.6
3,987,577	+				+1.8
3,987,577	+				+0.8
3,987,578	-				-0.0
3,987,578	-				+0.1
3,987,587	-				+1.4
3,987,587	-				+1.4
3,987,604	+				-0.0
3,987,604	+				+0.4
3,987,604	+				+0.7
3,987,604	+				+1.8
3,987,604	+				+1.3
3,987,605	-				-0.1
3,987,670	+		IAI47_18695	0.15	-1.2
3,987,679	+		IAI47_18695	0.16	+1.3
3,987,679	+		IAI47_18695	0.16	+0.6
3,987,679	+		IAI47_18695	0.16	-0.4
3,987,680	-		IAI47_18695	0.16	+0.1
3,987,680	-		IAI47_18695	0.16	-0.6
3,987,697	+		IAI47_18695	0.19	+2.7
3,987,698	-		IAI47_18695	0.19	-1.5
3,987,727	+		IAI47_18695	0.23	-0.2
3,987,728	-		IAI47_18695	0.23	+2.0
3,987,728	-		IAI47_18695	0.23	-1.9
3,987,776	+		IAI47_18695	0.30	+2.3
3,987,788	+		IAI47_18695	0.31	-1.4
3,987,788	+		IAI47_18695	0.31	+2.2
3,987,788	+		IAI47_18695	0.31	+0.7
3,987,788	+		IAI47_18695	0.31	-0.5
3,987,788	+		IAI47_18695	0.31	-1.9
3,987,789	-		IAI47_18695	0.32	+1.4
3,987,789	-		IAI47_18695	0.32	-0.9
3,987,789	-		IAI47_18695	0.32	+0.4
3,987,789	-		IAI47_18695	0.32	-1.6
3,987,878	+		IAI47_18695	0.44	-0.8
3,987,878	+		IAI47_18695	0.44	-0.6
3,987,879	-		IAI47_18695	0.44	+0.7
3,987,932	-		IAI47_18695	0.51	+1.0
3,987,932	-		IAI47_18695	0.51	+1.4
3,987,985	-		IAI47_18695	0.59	-1.4
3,987,985	-		IAI47_18695	0.59	-0.7
3,988,014	-		IAI47_18695	0.63	+0.4
3,988,025	+		IAI47_18695	0.64	+0.4
3,988,025	+		IAI47_18695	0.64	+1.5
3,988,026	-		IAI47_18695	0.65	-2.2
3,988,026	-		IAI47_18695	0.65	+0.3
3,988,026	-		IAI47_18695	0.65	+0.2
3,988,026	-		IAI47_18695	0.65	+0.4
3,988,026	-		IAI47_18695	0.65	-2.6
3,988,027	+		IAI47_18695	0.65	-0.5
3,988,028	-		IAI47_18695	0.65	-0.6
3,988,028	-		IAI47_18695	0.65	-0.6
3,988,028	-		IAI47_18695	0.65	-0.2
3,988,028	-		IAI47_18695	0.65	+1.1
3,988,028	-		IAI47_18695	0.65	-0.5
3,988,075	+		IAI47_18695	0.71	+0.4
3,988,196	+		IAI47_18695	0.88	-0.4
3,988,196	+		IAI47_18695	0.88	+0.2
3,988,196	+		IAI47_18695	0.88	+1.2
3,988,196	+		IAI47_18695	0.88	+0.4
3,988,196	+		IAI47_18695	0.88	-0.8
3,988,197	-		IAI47_18695	0.88	-0.6
3,988,197	-		IAI47_18695	0.88	-0.1
3,988,197	-		IAI47_18695	0.88	+0.1
3,988,197	-		IAI47_18695	0.88	+0.0
3,988,206	+		IAI47_18695	0.90	+0.2
3,988,207	-		IAI47_18695	0.90	+1.2
3,988,281	+				+0.4
3,988,288	+				-0.0
3,988,288	+				+0.0
3,988,288	+				+0.6
3,988,288	+				+0.8
3,988,289	-				+0.9
3,988,289	-				-0.1
3,988,289	-				-0.9
3,988,289	-				+0.4
3,988,289	-				+1.0
3,988,294	+				+2.1
3,988,300	+				-0.5
3,988,300	+				+0.4
3,988,300	+				+0.4
3,988,300	+				+0.7
3,988,300	+				-0.9
3,988,301	-				+1.7
3,988,301	-				+1.1
3,988,301	-				+0.6
3,988,301	-				+2.1
3,988,330	+				-0.4
3,988,330	+				+0.4
3,988,330	+				+0.2
3,988,330	+				+0.1
3,988,330	+				+0.4
3,988,330	+				+0.2
3,988,331	-				-0.1
3,988,331	-				+0.5
3,988,412	-				+0.4
3,988,412	-				+0.4
3,988,413	+				-0.4
3,988,415	+				-1.4
3,988,416	-				-1.6
3,988,434	+				+2.3
3,988,434	+				-0.6
3,988,434	+				-0.9
3,988,435	-				+0.2
3,988,455	+				-0.6
3,988,456	-				-0.1
3,988,463	+				-1.2
3,988,464	-				+0.4
3,988,464	-				+0.4
3,988,495	+				-2.0
3,988,495	+				-0.2
3,988,495	+				+1.7
3,988,495	+				-0.9
3,988,549	+				-0.1
3,988,550	-				+0.7
3,988,562	-				+0.7
3,988,562	-				-0.6
3,988,607	+				+1.4
3,988,607	+				+0.8
3,988,607	+				+0.5
3,988,608	-				+0.1
3,988,608	-				+1.3
3,988,608	-				-0.2
3,988,622	+				-1.2
3,988,622	+				+0.1
3,988,622	+				+0.6
3,988,622	+				+0.1
3,988,622	+				+0.8
3,988,622	+				+0.4
3,988,622	+				-0.0
3,988,623	-				+0.6
3,988,623	-				+0.1
3,988,623	-				-2.8
3,988,623	-				-0.3
3,988,623	-				+0.4
3,988,623	-				-0.8
3,988,623	-				-0.9
3,988,623	-				+0.4
3,988,623	-				+1.4
3,988,623	-				+1.0
3,988,626	+				+1.2
3,988,627	+				+0.4
3,988,627	+				-0.4
3,988,627	+				-1.4
3,988,627	+				+0.4
3,988,627	+				+0.5
3,988,627	+				-0.2
3,988,627	+				-1.1
3,988,627	+				-0.2
3,988,627	+				-1.2
3,988,627	+				+1.5
3,988,627	+				+0.5
3,988,627	+				+0.0
3,988,627	+				+2.1
3,988,628	-				-0.4
3,988,628	-				+0.2
3,988,628	-				+2.6
3,988,628	-				+0.2
3,988,628	-				-0.2
3,988,628	-				-0.8
3,988,628	-				-1.2
3,988,628	-				+1.4
3,988,628	-				-0.4
3,988,628	-				+0.8
3,988,628	-				-1.2
3,988,628	-				-1.1
3,988,628	-				+0.2
3,988,630	+				+0.7
3,988,630	+				+1.2
3,988,630	+				+1.6
3,988,630	+				-0.3
3,988,630	+				-1.0
3,988,631	-				-1.9
3,988,631	-				+1.4
3,988,631	-				+0.4
3,988,631	-				-0.6
3,988,631	-				-1.2
3,988,631	-				+2.1
3,988,631	-				-0.6
3,988,680	+				+1.3
3,988,680	+				-0.6
3,988,681	-				-0.3
3,988,711	+				+1.4
3,988,711	+				-0.4
3,988,711	+				-0.2
3,988,711	+				+0.1
3,988,712	-				+1.4
3,988,712	-				+0.5
3,988,712	-				-0.0
3,988,712	-				-1.2
3,988,712	-				+1.4
3,988,712	-				-0.8
3,988,712	-				+2.1
3,988,712	-				+0.4
3,988,737	+				+1.7
3,988,737	+				+0.4
3,988,737	+				-1.9
3,988,737	+				-0.1
3,988,737	+				-1.2
3,988,737	+				+0.9
3,988,738	-				+0.8
3,988,762	+				+0.6
3,988,762	+				-0.4
3,988,762	+				-1.9
3,988,762	+				-0.1
3,988,762	+				+1.6
3,988,763	-				-0.4
3,988,763	-				+0.8
3,988,765	+				+1.4
3,988,765	+				+1.1
3,988,765	+				+0.9
3,988,765	+				-0.6
3,988,765	+				-1.2
3,988,765	+				+1.8
3,988,765	+				-2.6
3,988,765	+				+2.1
3,988,766	-				+0.7
3,988,766	-				+0.9
3,988,766	-				-1.5
3,988,766	-				+2.0
3,988,766	-				-0.2
3,988,766	-				+0.9
3,988,766	-				-0.6
3,988,766	-				-1.3
3,988,766	-				+0.4
3,988,766	-				+0.4
3,988,766	-				+0.4
3,988,804	+				+0.4
3,988,804	+				+0.0
3,988,805	-				+0.4
3,988,805	-				+0.4
3,988,822	+				+1.5
3,988,823	-				-0.0
3,988,883	+				+0.8
3,988,884	-				-0.1
3,988,884	-				-0.0
3,988,884	-				-2.6
3,988,884	-				-0.6
3,988,909	+		IAI47_18700	0.10	+0.6
3,988,960	+		IAI47_18700	0.13	-2.2
3,988,961	-		IAI47_18700	0.13	-1.2
3,988,961	-		IAI47_18700	0.13	+2.3
3,988,990	+		IAI47_18700	0.14	+0.1
3,988,991	-		IAI47_18700	0.14	-0.1
3,989,044	+		IAI47_18700	0.17	-0.1
3,989,044	+		IAI47_18700	0.17	+0.3
3,989,044	+		IAI47_18700	0.17	+0.2
3,989,044	+		IAI47_18700	0.17	+0.4
3,989,044	+		IAI47_18700	0.17	-2.2
3,989,044	+		IAI47_18700	0.17	+0.7
3,989,045	-		IAI47_18700	0.17	-0.1
3,989,045	-		IAI47_18700	0.17	-0.6
3,989,102	-		IAI47_18700	0.20	-1.2
3,989,120	-		IAI47_18700	0.21	+1.8
3,989,122	+		IAI47_18700	0.21	-1.2
3,989,172	+		IAI47_18700	0.24	+0.6
3,989,172	+		IAI47_18700	0.24	+0.4