Strain Fitness in Pantoea sp. MT58 around IAI47_18395

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,915,102	-		IAI47_18390	0.64	-0.5
3,915,102	-		IAI47_18390	0.64	+1.5
3,915,102	-		IAI47_18390	0.64	-1.2
3,915,130	+		IAI47_18390	0.65	-2.4
3,915,130	+		IAI47_18390	0.65	-0.6
3,915,131	-		IAI47_18390	0.65	+0.8
3,915,131	-		IAI47_18390	0.65	-0.4
3,915,202	+		IAI47_18390	0.68	+0.4
3,915,203	-		IAI47_18390	0.68	-0.6
3,915,203	-		IAI47_18390	0.68	-2.8
3,915,203	-		IAI47_18390	0.68	-1.2
3,915,219	-		IAI47_18390	0.69	-0.8
3,915,249	-		IAI47_18390	0.70	-2.2
3,915,249	-		IAI47_18390	0.70	-1.6
3,915,249	-		IAI47_18390	0.70	-0.0
3,915,269	+		IAI47_18390	0.71	-1.9
3,915,269	+		IAI47_18390	0.71	+0.1
3,915,269	+		IAI47_18390	0.71	-0.4
3,915,270	-		IAI47_18390	0.71	-0.0
3,915,270	-		IAI47_18390	0.71	-1.2
3,915,270	-		IAI47_18390	0.71	-0.8
3,915,270	-		IAI47_18390	0.71	+2.3
3,915,270	-		IAI47_18390	0.71	-1.6
3,915,270	-		IAI47_18390	0.71	-1.4
3,915,270	-		IAI47_18390	0.71	-0.6
3,915,270	-		IAI47_18390	0.71	-1.4
3,915,334	-		IAI47_18390	0.74	-1.0
3,915,370	+		IAI47_18390	0.76	+1.4
3,915,371	-		IAI47_18390	0.76	+1.0
3,915,371	-		IAI47_18390	0.76	-1.0
3,915,407	-		IAI47_18390	0.78	-2.2
3,915,407	-		IAI47_18390	0.78	-0.6
3,915,407	-		IAI47_18390	0.78	+0.1
3,915,416	+		IAI47_18390	0.78	+1.0
3,915,416	+		IAI47_18390	0.78	+0.9
3,915,417	-		IAI47_18390	0.78	-0.2
3,915,457	+		IAI47_18390	0.80	-0.1
3,915,457	+		IAI47_18390	0.80	+0.2
3,915,457	+		IAI47_18390	0.80	-1.4
3,915,457	+		IAI47_18390	0.80	-1.1
3,915,457	+		IAI47_18390	0.80	-2.2
3,915,457	+		IAI47_18390	0.80	+0.4
3,915,457	+		IAI47_18390	0.80	+0.4
3,915,457	+		IAI47_18390	0.80	-1.0
3,915,458	-		IAI47_18390	0.80	-0.6
3,915,458	-		IAI47_18390	0.80	-1.9
3,915,458	-		IAI47_18390	0.80	+0.0
3,915,509	+		IAI47_18390	0.82	-0.9
3,915,510	-		IAI47_18390	0.82	-0.2
3,915,510	-		IAI47_18390	0.82	+0.4
3,915,521	+		IAI47_18390	0.83	+0.4
3,915,522	-		IAI47_18390	0.83	-2.0
3,915,600	+		IAI47_18390	0.87	-1.4
3,915,601	-		IAI47_18390	0.87	+0.4
3,915,601	-		IAI47_18390	0.87	-1.2
3,915,672	-		IAI47_18390	0.90	+0.6
3,915,704	+				+0.1
3,915,705	-				-0.2
3,915,728	-				-0.6
3,915,789	-				-0.1
3,915,789	-				-0.2
3,915,789	-				-0.4
3,915,890	+				-0.2
3,915,890	+				-0.4
3,915,890	+				-0.6
3,915,891	-				-0.4
3,915,891	-				-0.8
3,915,934	-				-1.9
3,915,955	+				-1.6
3,915,956	-				-1.2
3,915,956	-				+1.0
3,915,992	+				+0.4
3,915,993	-				+0.2
3,916,037	+				+1.2
3,916,046	+				-0.6
3,916,047	-				-0.6
3,916,048	+				+2.4
3,916,048	+				+2.2
3,916,048	+				+0.4
3,916,048	+				+1.4
3,916,049	-				+0.4
3,916,049	-				-0.8
3,916,049	-				-1.2
3,916,113	+				-0.8
3,916,114	-				-1.5
3,916,114	-				+0.2
3,916,215	+		IAI47_18395	0.24	+0.4
3,916,215	+		IAI47_18395	0.24	+0.4
3,916,215	+		IAI47_18395	0.24	+2.4
3,916,215	+		IAI47_18395	0.24	+0.8
3,916,216	-		IAI47_18395	0.24	-1.1
3,916,216	-		IAI47_18395	0.24	-0.3
3,916,216	-		IAI47_18395	0.24	-0.9
3,916,216	-		IAI47_18395	0.24	-2.6
3,916,216	-		IAI47_18395	0.24	+0.6
3,916,231	-		IAI47_18395	0.26	-2.6
3,916,256	+		IAI47_18395	0.29	-0.4
3,916,256	+		IAI47_18395	0.29	-0.8
3,916,256	+		IAI47_18395	0.29	-0.2
3,916,256	+		IAI47_18395	0.29	-1.2
3,916,256	+		IAI47_18395	0.29	+1.3
3,916,256	+		IAI47_18395	0.29	+2.4
3,916,256	+		IAI47_18395	0.29	+0.4
3,916,256	+		IAI47_18395	0.29	-0.5
3,916,256	+		IAI47_18395	0.29	-1.6
3,916,256	+		IAI47_18395	0.29	-1.2
3,916,256	+		IAI47_18395	0.29	-1.0
3,916,257	-		IAI47_18395	0.30	+0.5
3,916,257	-		IAI47_18395	0.30	+1.4
3,916,257	-		IAI47_18395	0.30	-0.1
3,916,257	-		IAI47_18395	0.30	-1.0
3,916,257	-		IAI47_18395	0.30	-0.6
3,916,257	-		IAI47_18395	0.30	-0.6
3,916,257	-		IAI47_18395	0.30	+1.9
3,916,257	-		IAI47_18395	0.30	+0.1
3,916,257	-		IAI47_18395	0.30	-0.4
3,916,257	-		IAI47_18395	0.30	+1.4
3,916,257	-		IAI47_18395	0.30	+2.0
3,916,258	+		IAI47_18395	0.30	+0.1
3,916,260	+		IAI47_18395	0.30	+0.1
3,916,260	+		IAI47_18395	0.30	+0.6
3,916,260	+		IAI47_18395	0.30	-0.4
3,916,260	+		IAI47_18395	0.30	-1.0
3,916,261	-		IAI47_18395	0.30	-1.6
3,916,261	-		IAI47_18395	0.30	-0.0
3,916,261	-		IAI47_18395	0.30	-0.8
3,916,261	-		IAI47_18395	0.30	+1.0
3,916,261	-		IAI47_18395	0.30	-2.3
3,916,261	-		IAI47_18395	0.30	-0.1
3,916,261	-		IAI47_18395	0.30	-0.5
3,916,261	-		IAI47_18395	0.30	+1.1
3,916,261	-		IAI47_18395	0.30	+2.4
3,916,261	-		IAI47_18395	0.30	-1.2
3,916,261	-		IAI47_18395	0.30	+1.6
3,916,305	+		IAI47_18395	0.36	-0.6
3,916,306	-		IAI47_18395	0.36	-1.0
3,916,317	-		IAI47_18395	0.38	+1.4
3,916,317	-		IAI47_18395	0.38	-0.6
3,916,317	-		IAI47_18395	0.38	+0.4
3,916,397	-		IAI47_18395	0.49	+1.8
3,916,546	+		IAI47_18395	0.70	+0.4
3,916,546	+		IAI47_18395	0.70	-0.1
3,916,547	-				-0.2
3,916,547	-		IAI47_18395	0.70	-1.0
3,916,556	+		IAI47_18395	0.71	-0.3
3,916,556	+		IAI47_18395	0.71	+1.4
3,916,556	+		IAI47_18395	0.71	-0.4
3,916,556	+		IAI47_18395	0.71	-0.1
3,916,556	+		IAI47_18395	0.71	-0.4
3,916,556	+		IAI47_18395	0.71	-1.6
3,916,557	-		IAI47_18395	0.71	-0.8
3,916,557	-		IAI47_18395	0.71	+1.3
3,916,557	-		IAI47_18395	0.71	-0.0
3,916,557	-		IAI47_18395	0.71	+1.2
3,916,557	-		IAI47_18395	0.71	-0.4
3,916,591	+		IAI47_18395	0.76	+3.2
3,916,591	+		IAI47_18395	0.76	+2.1
3,916,591	+		IAI47_18395	0.76	-0.2
3,916,592	-		IAI47_18395	0.76	+0.8
3,916,592	-		IAI47_18395	0.76	+0.4
3,916,602	-		IAI47_18395	0.78	-0.0
3,916,602	-		IAI47_18395	0.78	-1.8
3,916,671	+		IAI47_18395	0.87	-2.4
3,916,671	+		IAI47_18395	0.87	-0.2
3,916,688	+		IAI47_18395	0.90	-0.6
3,916,688	+				-1.7
3,916,688	+		IAI47_18395	0.90	+2.2
3,916,689	-		IAI47_18395	0.90	-0.4
3,916,692	+				+0.1
3,916,692	+				+0.3
3,916,692	+				+0.6
3,916,692	+				-0.2
3,916,693	-				+0.2
3,916,693	-				-0.3
3,916,693	-				+3.0
3,916,697	+				+0.6
3,916,697	+				+0.6
3,916,698	-				+0.7
3,916,725	+				+1.1
3,916,725	+				-0.0
3,916,726	-				+0.7
3,916,726	-				+1.0
3,916,726	-				+2.0
3,916,726	-				-1.2
3,916,732	+				+0.2
3,916,732	+				+0.4
3,916,733	-				+0.1
3,916,733	-				-3.1
3,916,733	-				-0.0
3,916,752	-				+0.8
3,916,752	-				+0.8
3,916,838	-				-1.2
3,916,872	+		IAI47_18400	0.13	-2.2
3,917,002	-		IAI47_18400	0.27	-0.6
3,917,002	-		IAI47_18400	0.27	-0.6
3,917,234	-		IAI47_18400	0.53	-1.6
3,917,234	-		IAI47_18400	0.53	-1.2
3,917,234	-		IAI47_18400	0.53	-1.6
3,917,345	+		IAI47_18400	0.65	-1.6
3,917,346	-		IAI47_18400	0.65	-2.4
3,917,358	+		IAI47_18400	0.66	+0.4
3,917,575	+				-1.6
3,917,658	-				-1.0
3,917,658	-				-1.6
3,917,746	-		IAI47_18405	0.12	+0.7