Strain Fitness in Pantoea sp. MT58 around IAI47_17900

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,799,540	-				-0.6
3,799,540	-				+1.6
3,799,555	-				-0.5
3,799,555	-				+1.3
3,799,556	+				-0.2
3,799,557	-				-0.0
3,799,557	-				-0.8
3,799,557	-				+0.5
3,799,557	-				-0.6
3,799,557	-				+0.7
3,799,557	-				-0.2
3,799,558	+				-1.2
3,799,558	+				+0.6
3,799,558	+				-0.2
3,799,559	-				+1.4
3,799,559	-				-2.9
3,799,559	-				-0.6
3,799,559	-				+0.4
3,799,615	+				+1.4
3,799,627	-				+1.0
3,799,627	-				-1.3
3,799,673	+		IAI47_17895	0.13	-1.2
3,799,673	+		IAI47_17895	0.13	-0.4
3,799,673	+		IAI47_17895	0.13	-1.0
3,799,673	+		IAI47_17895	0.13	-1.2
3,799,673	+		IAI47_17895	0.13	+0.8
3,799,673	+		IAI47_17895	0.13	+1.4
3,799,673	+		IAI47_17895	0.13	-0.2
3,799,674	-		IAI47_17895	0.13	-0.4
3,799,674	-		IAI47_17895	0.13	-0.6
3,799,674	-		IAI47_17895	0.13	-0.9
3,799,674	-		IAI47_17895	0.13	-0.9
3,799,674	-		IAI47_17895	0.13	+2.0
3,799,774	+		IAI47_17895	0.40	+0.4
3,799,862	-		IAI47_17895	0.64	-1.4
3,799,862	-		IAI47_17895	0.64	-0.5
3,799,862	-		IAI47_17895	0.64	+0.2
3,799,864	+		IAI47_17895	0.65	-0.4
3,799,864	+		IAI47_17895	0.65	-0.6
3,799,864	+		IAI47_17895	0.65	+1.4
3,799,864	+		IAI47_17895	0.65	+1.2
3,799,864	+		IAI47_17895	0.65	+0.8
3,799,864	+		IAI47_17895	0.65	+2.0
3,799,864	+		IAI47_17895	0.65	-0.3
3,799,864	+		IAI47_17895	0.65	+1.6
3,799,865	-		IAI47_17895	0.65	-0.6
3,799,865	-		IAI47_17895	0.65	-0.6
3,799,865	-		IAI47_17895	0.65	-0.0
3,799,865	-		IAI47_17895	0.65	-0.9
3,799,944	+		IAI47_17895	0.86	+0.1
3,799,944	+		IAI47_17895	0.86	-1.5
3,799,944	+		IAI47_17895	0.86	-0.6
3,799,945	-		IAI47_17895	0.87	+1.5
3,799,958	+				-1.1
3,799,961	+				+1.7
3,799,961	+				-0.6
3,799,961	+				+0.7
3,799,961	+				-0.4
3,799,962	-				+3.0
3,799,962	-				+0.4
3,799,962	-				-0.2
3,799,962	-				+0.1
3,799,970	-				-0.6
3,799,984	+				+2.4
3,799,984	+				+2.3
3,799,984	+				-2.2
3,799,984	+				+1.0
3,799,985	-				-0.2
3,799,985	-				-2.3
3,802,260	+		IAI47_17900	0.88	-0.6
3,802,260	+		IAI47_17900	0.88	-1.6
3,802,260	+		IAI47_17900	0.88	-2.4
3,802,561	+				+0.2
3,802,562	-				-2.2
3,802,632	+				-0.9
3,802,632	+				+2.0
3,803,477	-				-1.6
3,803,477	-				-0.6
3,803,518	-				+0.5