Strain Fitness in Pantoea sp. MT58 around IAI47_17850

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,789,602	+		IAI47_17840	0.84	-0.3
3,789,602	+		IAI47_17840	0.84	+0.4
3,789,602	+		IAI47_17840	0.84	+0.9
3,789,602	+		IAI47_17840	0.84	+0.0
3,789,602	+		IAI47_17840	0.84	+1.0
3,789,603	-		IAI47_17840	0.84	-0.6
3,789,603	-		IAI47_17840	0.84	-0.7
3,789,603	-		IAI47_17840	0.84	-1.7
3,789,603	-		IAI47_17840	0.84	-0.8
3,789,696	-				+0.9
3,789,696	-				+1.2
3,789,734	+				-0.0
3,789,808	-				-0.3
3,789,808	-				-0.4
3,789,861	+				-0.1
3,789,861	+				-3.1
3,789,862	-				+1.2
3,789,862	-				+1.6
3,789,869	-				-0.2
3,789,869	-				-0.6
3,789,878	+				+0.1
3,789,890	+				-1.2
3,789,891	-				+0.5
3,789,901	-				-1.5
3,789,901	-				-1.2
3,789,944	+				+0.9
3,790,000	+		IAI47_17845	0.12	+2.0
3,790,000	+		IAI47_17845	0.12	+0.3
3,790,001	-		IAI47_17845	0.12	+0.1
3,790,001	-		IAI47_17845	0.12	-0.7
3,790,001	-		IAI47_17845	0.12	-2.4
3,790,003	+		IAI47_17845	0.12	+0.8
3,790,004	-		IAI47_17845	0.13	+1.4
3,790,045	+		IAI47_17845	0.21	-0.1
3,790,045	+		IAI47_17845	0.21	-1.0
3,790,046	-		IAI47_17845	0.21	+0.6
3,790,046	-		IAI47_17845	0.21	+1.1
3,790,046	-		IAI47_17845	0.21	+0.4
3,790,057	+		IAI47_17845	0.24	+1.1
3,790,057	+		IAI47_17845	0.24	-1.6
3,790,057	+		IAI47_17845	0.24	-1.8
3,790,058	-		IAI47_17845	0.24	-0.1
3,790,095	+		IAI47_17845	0.32	-0.2
3,790,095	+		IAI47_17845	0.32	+0.4
3,790,096	-		IAI47_17845	0.32	+0.5
3,790,103	+		IAI47_17845	0.33	+0.7
3,790,103	+		IAI47_17845	0.33	-0.8
3,790,103	+		IAI47_17845	0.33	+0.8
3,790,104	-		IAI47_17845	0.34	-1.4
3,790,104	-		IAI47_17845	0.34	-0.1
3,790,104	-		IAI47_17845	0.34	-0.7
3,790,104	-		IAI47_17845	0.34	-0.5
3,790,104	-		IAI47_17845	0.34	-0.4
3,790,127	+		IAI47_17845	0.38	-0.0
3,790,181	+		IAI47_17845	0.50	+1.9
3,790,181	+		IAI47_17845	0.50	+0.3
3,790,181	+		IAI47_17845	0.50	+1.2
3,790,182	-		IAI47_17845	0.50	+0.8
3,790,182	-		IAI47_17845	0.50	+0.9
3,790,197	+		IAI47_17845	0.53	-1.4
3,790,197	+		IAI47_17845	0.53	-1.1
3,790,198	-		IAI47_17845	0.53	+0.8
3,790,201	+		IAI47_17845	0.54	-0.5
3,790,201	+		IAI47_17845	0.54	-0.4
3,790,201	+		IAI47_17845	0.54	-0.6
3,790,202	-		IAI47_17845	0.54	+1.4
3,790,202	-		IAI47_17845	0.54	+0.4
3,790,217	-		IAI47_17845	0.57	+0.4
3,790,281	+		IAI47_17845	0.70	+1.1
3,790,281	+		IAI47_17845	0.70	+0.5
3,790,282	-		IAI47_17845	0.71	+0.1
3,790,299	+		IAI47_17845	0.74	-1.9
3,790,300	-		IAI47_17845	0.74	+0.4
3,790,372	-		IAI47_17845	0.89	+0.4
3,790,378	+				-2.3
3,790,379	-				+0.3
3,790,381	+				+1.1
3,790,381	+				+0.3
3,790,382	-				+1.7
3,790,382	-				+2.1
3,790,382	-				+1.2
3,790,382	-				-1.1
3,790,382	-				+0.1
3,790,382	-				+0.6
3,790,395	+				+1.0
3,790,396	-				+1.4
3,790,403	+				-0.6
3,790,403	+				+1.0
3,790,412	-				+0.2
3,790,412	-				-0.4
3,790,453	+				+0.4
3,790,453	+				+1.4
3,790,453	+				-0.8
3,790,454	-				+2.0
3,790,456	+				+0.5
3,790,456	+				+1.1
3,790,456	+				-2.4
3,790,456	+				-1.5
3,790,457	-				-0.2
3,790,457	-				+0.4
3,790,462	+				-0.6
3,790,463	-				+2.0
3,790,494	-				-0.1
3,790,494	-				+0.4
3,790,553	+				-1.1
3,790,565	+				-0.6
3,790,565	+				-0.8
3,790,566	-				-0.5
3,790,566	-				+0.5
3,791,998	-				+0.4
3,791,998	-				+2.1
3,791,998	-				-1.0
3,791,998	-				-0.0
3,791,998	-				+0.2
3,792,000	-				+0.2
3,792,000	-				+0.1
3,792,000	-				-0.4
3,792,000	-				-2.0
3,792,000	-				-2.2
3,792,004	+				+0.4
3,792,004	+				+0.4
3,792,004	+				-1.2
3,792,004	+				-0.8
3,792,004	+				+2.0
3,792,004	+				+0.0
3,792,004	+				+0.5
3,792,004	+				+0.4
3,792,005	-				-0.6
3,792,005	-				-0.5
3,792,005	-				+0.1
3,792,005	-				-1.5
3,792,005	-				-0.6
3,792,005	-				+0.6
3,792,005	-				-0.5
3,792,005	-				-0.2
3,792,005	-				-1.0
3,792,005	-				-0.1
3,792,005	-				+0.9
3,792,005	-				+2.4
3,792,005	-				-0.2
3,792,005	-				-0.3
3,792,005	-				-0.3
3,792,005	-				-0.8
3,792,005	-				-1.4
3,792,005	-				+0.6
3,792,005	-				-0.1
3,792,005	-				+0.8
3,792,005	-				+1.1
3,792,066	+				+0.8
3,792,066	+				-0.2
3,792,066	+				+0.6
3,792,066	+				-0.4
3,792,067	-				+0.8
3,792,067	-				-0.0
3,792,101	+				+0.5
3,792,174	+		IAI47_17855	0.12	+0.1
3,792,175	-		IAI47_17855	0.12	+0.1
3,792,178	+		IAI47_17855	0.12	-0.6
3,792,178	+		IAI47_17855	0.12	-0.6
3,792,178	+		IAI47_17855	0.12	+0.2
3,792,178	+		IAI47_17855	0.12	-2.2
3,792,179	-		IAI47_17855	0.13	+0.2
3,792,179	-		IAI47_17855	0.13	+0.4
3,792,179	-		IAI47_17855	0.13	-0.6
3,792,179	-		IAI47_17855	0.13	-0.2
3,792,186	+		IAI47_17855	0.13	+0.0
3,792,186	+		IAI47_17855	0.13	-1.2
3,792,186	+		IAI47_17855	0.13	+0.4
3,792,186	+		IAI47_17855	0.13	-0.1
3,792,186	+		IAI47_17855	0.13	-0.8
3,792,186	+		IAI47_17855	0.13	+1.6
3,792,187	-		IAI47_17855	0.13	+1.1
3,792,187	-		IAI47_17855	0.13	-0.4
3,792,187	-		IAI47_17855	0.13	+0.5
3,792,187	-		IAI47_17855	0.13	+0.5
3,792,190	+		IAI47_17855	0.14	+0.1
3,792,190	+		IAI47_17855	0.14	-0.5
3,792,190	+		IAI47_17855	0.14	-1.2
3,792,190	+		IAI47_17855	0.14	+0.1
3,792,190	+		IAI47_17855	0.14	-1.2
3,792,190	+		IAI47_17855	0.14	+1.4
3,792,190	+		IAI47_17855	0.14	+0.6
3,792,190	+		IAI47_17855	0.14	+1.1
3,792,190	+		IAI47_17855	0.14	+0.5
3,792,190	+		IAI47_17855	0.14	+0.6
3,792,190	+		IAI47_17855	0.14	+0.1
3,792,190	+		IAI47_17855	0.14	+1.6
3,792,190	+		IAI47_17855	0.14	-0.6
3,792,190	+		IAI47_17855	0.14	+1.4
3,792,191	-		IAI47_17855	0.14	+1.5
3,792,191	-		IAI47_17855	0.14	+1.0
3,792,191	-		IAI47_17855	0.14	+0.7
3,792,191	-		IAI47_17855	0.14	+0.4
3,792,191	-		IAI47_17855	0.14	-0.9
3,792,191	-		IAI47_17855	0.14	-0.7
3,792,191	-		IAI47_17855	0.14	+3.0
3,792,191	-		IAI47_17855	0.14	+0.4
3,792,191	-		IAI47_17855	0.14	-1.6
3,792,191	-		IAI47_17855	0.14	-0.6
3,792,191	-		IAI47_17855	0.14	-0.1
3,792,191	-		IAI47_17855	0.14	+0.7
3,792,191	-		IAI47_17855	0.14	-0.2
3,792,191	-		IAI47_17855	0.14	-0.7
3,792,191	-		IAI47_17855	0.14	-0.6
3,792,191	-		IAI47_17855	0.14	+1.1
3,792,191	-		IAI47_17855	0.14	+0.4
3,792,191	-		IAI47_17855	0.14	-0.7
3,792,191	-		IAI47_17855	0.14	-0.6
3,792,209	-		IAI47_17855	0.16	-0.4
3,792,269	+		IAI47_17855	0.22	+0.8
3,792,269	+		IAI47_17855	0.22	+0.6
3,792,270	-		IAI47_17855	0.22	-0.9
3,792,270	-		IAI47_17855	0.22	+0.6
3,792,292	-		IAI47_17855	0.24	+0.4
3,792,313	+		IAI47_17855	0.26	+2.4
3,792,313	+		IAI47_17855	0.26	+1.2
3,792,313	+		IAI47_17855	0.26	+0.4
3,792,313	+		IAI47_17855	0.26	-0.5
3,792,314	-		IAI47_17855	0.26	-0.6
3,792,314	-		IAI47_17855	0.26	-0.3
3,792,314	-		IAI47_17855	0.26	+0.8
3,792,327	+		IAI47_17855	0.28	-0.4
3,792,337	+		IAI47_17855	0.29	-0.4
3,792,337	+		IAI47_17855	0.29	+1.8
3,792,337	+		IAI47_17855	0.29	+0.4
3,792,337	+		IAI47_17855	0.29	-0.2
3,792,337	+		IAI47_17855	0.29	+3.2
3,792,337	+		IAI47_17855	0.29	-0.8
3,792,337	+		IAI47_17855	0.29	+3.8
3,792,337	+		IAI47_17855	0.29	-0.0
3,792,337	+		IAI47_17855	0.29	-1.0
3,792,337	+		IAI47_17855	0.29	+0.4
3,792,337	+		IAI47_17855	0.29	+1.4
3,792,337	+		IAI47_17855	0.29	+1.2
3,792,338	-		IAI47_17855	0.29	-1.1
3,792,338	-		IAI47_17855	0.29	-0.1
3,792,338	-		IAI47_17855	0.29	+0.7
3,792,338	-		IAI47_17855	0.29	+1.0
3,792,338	-		IAI47_17855	0.29	+1.4
3,792,338	-		IAI47_17855	0.29	-0.2
3,792,338	-		IAI47_17855	0.29	+0.2
3,792,442	+		IAI47_17855	0.39	+0.1
3,792,442	+		IAI47_17855	0.39	+0.4
3,792,442	+		IAI47_17855	0.39	-1.1
3,792,442	+		IAI47_17855	0.39	-0.1
3,792,442	+		IAI47_17855	0.39	+1.7
3,792,442	+		IAI47_17855	0.39	+1.6
3,792,443	-		IAI47_17855	0.39	-0.1
3,792,443	-		IAI47_17855	0.39	-0.3
3,792,443	-		IAI47_17855	0.39	-0.4
3,792,443	-		IAI47_17855	0.39	+0.8
3,792,443	-		IAI47_17855	0.39	+0.9
3,792,461	-		IAI47_17855	0.41	+1.4
3,792,461	-		IAI47_17855	0.41	+0.4
3,792,462	+		IAI47_17855	0.41	+0.7
3,792,462	+		IAI47_17855	0.41	-0.6
3,792,463	-		IAI47_17855	0.41	+1.1
3,792,519	-		IAI47_17855	0.47	-1.0
3,792,519	-		IAI47_17855	0.47	+1.7
3,792,624	+		IAI47_17855	0.58	+1.4
3,792,624	+		IAI47_17855	0.58	-0.8
3,792,624	+		IAI47_17855	0.58	-1.0
3,792,624	+		IAI47_17855	0.58	-1.5
3,792,624	+		IAI47_17855	0.58	+1.7
3,792,624	+		IAI47_17855	0.58	-1.2
3,792,625	-		IAI47_17855	0.58	+2.4
3,792,625	-		IAI47_17855	0.58	+0.6
3,792,625	-		IAI47_17855	0.58	-0.7
3,792,625	-		IAI47_17855	0.58	-1.6
3,792,625	-		IAI47_17855	0.58	-0.4
3,792,625	-		IAI47_17855	0.58	+1.4
3,792,625	-		IAI47_17855	0.58	-0.2
3,792,625	-		IAI47_17855	0.58	-1.9
3,792,629	-		IAI47_17855	0.58	+0.9
3,792,694	+		IAI47_17855	0.65	+0.9
3,792,694	+		IAI47_17855	0.65	+1.0
3,792,694	+		IAI47_17855	0.65	+3.3
3,792,695	-		IAI47_17855	0.65	+0.5
3,792,695	-		IAI47_17855	0.65	-0.6
3,792,695	-		IAI47_17855	0.65	-1.1
3,792,708	+		IAI47_17855	0.66	+2.2
3,792,714	+		IAI47_17855	0.67	+0.4
3,792,714	+		IAI47_17855	0.67	+2.1
3,792,714	+		IAI47_17855	0.67	+2.4
3,792,714	+		IAI47_17855	0.67	-0.2
3,792,714	+		IAI47_17855	0.67	-0.1
3,792,714	+		IAI47_17855	0.67	-1.2
3,792,715	-		IAI47_17855	0.67	-0.5
3,792,715	-		IAI47_17855	0.67	+3.0
3,792,715	-		IAI47_17855	0.67	-0.6
3,792,715	-		IAI47_17855	0.67	-0.1
3,792,715	-		IAI47_17855	0.67	+0.1
3,792,807	+		IAI47_17855	0.76	+1.2
3,792,808	-		IAI47_17855	0.77	-0.1
3,792,808	-		IAI47_17855	0.77	-1.4
3,792,859	+		IAI47_17855	0.82	-0.5
3,792,859	+		IAI47_17855	0.82	+1.2
3,792,860	-		IAI47_17855	0.82	+0.4
3,792,860	-		IAI47_17855	0.82	+1.8
3,792,860	-		IAI47_17855	0.82	-1.2
3,792,860	-		IAI47_17855	0.82	-1.2
3,792,860	-		IAI47_17855	0.82	+2.0
3,792,930	+		IAI47_17855	0.89	+1.4
3,792,930	+		IAI47_17855	0.89	+0.7
3,792,931	-		IAI47_17855	0.89	-1.2