Strain Fitness in Pantoea sp. MT58 around IAI47_17015

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,608,910	-		IAI47_17005	0.90	-2.2
3,608,924	-				-3.3
3,608,924	-				-2.1
3,608,927	+				-1.2
3,608,927	+				-1.6
3,608,928	-				-2.4
3,608,928	-				+0.4
3,608,938	+				+0.4
3,608,939	-				-1.2
3,608,976	-				-0.6
3,608,991	+				-0.6
3,608,992	-				-1.6
3,608,992	-				+0.4
3,608,992	-				+1.0
3,608,992	-				-0.6
3,609,015	-				-1.9
3,609,015	-				-2.2
3,609,033	+				-2.2
3,609,034	-				-2.2
3,609,034	-				-2.4
3,609,084	-				-2.2
3,609,094	+				-1.9
3,609,095	-				-0.9
3,609,139	-				-0.9
3,609,139	-				-0.6
3,609,155	+				-1.2
3,609,156	-				+0.4
3,609,156	-				-0.6
3,609,177	-				-0.2
3,609,177	-				-0.6
3,609,177	-				-1.6
3,609,177	-				+3.6
3,609,177	-				-0.8
3,609,177	-				+0.1
3,609,177	-				+0.8
3,609,177	-				-0.2
3,609,205	-				+0.4
3,609,205	-				+0.4
3,609,205	-				-0.6
3,609,246	-				-0.4
3,609,280	+				+0.4
3,609,281	-				-0.9
3,609,281	-				-0.6
3,609,281	-				+0.4
3,609,290	+				-0.6
3,609,291	-				-0.8
3,609,291	-				-0.4
3,609,291	-				-1.6
3,609,291	-				-0.8
3,609,291	-				+0.4
3,609,291	-				-0.6
3,609,291	-				-0.9
3,609,291	-				-0.6
3,609,340	-				+0.4
3,609,380	-				+1.0
3,609,380	-				+0.2
3,609,407	+				+0.1
3,609,407	+				-0.9
3,609,407	+				-2.9
3,609,407	+				+0.4
3,609,408	-				-0.6
3,609,408	-				-2.6
3,609,408	-				-0.8
3,609,408	-				-0.9
3,609,408	-				-0.2
3,609,408	-				-0.6
3,609,748	-				-1.4
3,609,748	-				-1.2
3,609,838	+				-1.6
3,609,838	+				-0.6
3,609,838	+				+0.8
3,609,839	-				+0.1
3,609,839	-				+0.6
3,609,839	-				-0.2
3,609,839	-				+1.2
3,609,858	+				+0.4
3,609,859	-				+0.4
3,609,859	-				-1.0
3,609,933	+		IAI47_17015	0.10	+0.1
3,609,962	+		IAI47_17015	0.13	-0.0
3,609,962	+		IAI47_17015	0.13	-0.9
3,609,963	-		IAI47_17015	0.13	-0.8
3,609,963	-		IAI47_17015	0.13	+3.0
3,609,972	+		IAI47_17015	0.14	+1.4
3,609,972	+		IAI47_17015	0.14	-0.6
3,609,972	+		IAI47_17015	0.14	+0.2
3,609,972	+		IAI47_17015	0.14	-0.2
3,609,972	+		IAI47_17015	0.14	+2.3
3,610,017	-		IAI47_17015	0.19	-1.0
3,610,122	-		IAI47_17015	0.30	+2.0
3,610,122	-		IAI47_17015	0.30	+0.1
3,610,153	+		IAI47_17015	0.33	-0.0
3,610,153	+		IAI47_17015	0.33	-0.6
3,610,153	+		IAI47_17015	0.33	-2.2
3,610,153	+		IAI47_17015	0.33	+0.4
3,610,153	+		IAI47_17015	0.33	+0.4
3,610,154	-		IAI47_17015	0.34	+2.4
3,610,245	-		IAI47_17015	0.43	+2.8
3,610,246	+		IAI47_17015	0.43	+3.0
3,610,246	+		IAI47_17015	0.43	+0.6
3,610,246	+		IAI47_17015	0.43	+0.7
3,610,246	+		IAI47_17015	0.43	+0.4
3,610,246	+		IAI47_17015	0.43	+1.9
3,610,246	+		IAI47_17015	0.43	+0.4
3,610,246	+		IAI47_17015	0.43	-0.8
3,610,246	+		IAI47_17015	0.43	+0.7
3,610,246	+		IAI47_17015	0.43	+2.0
3,610,246	+		IAI47_17015	0.43	-1.2
3,610,246	+		IAI47_17015	0.43	+1.2
3,610,246	+		IAI47_17015	0.43	-0.6
3,610,247	-		IAI47_17015	0.43	+0.9
3,610,247	-		IAI47_17015	0.43	+1.4
3,610,247	-		IAI47_17015	0.43	+0.5
3,610,247	-		IAI47_17015	0.43	+2.0
3,610,247	-		IAI47_17015	0.43	+2.0
3,610,247	-		IAI47_17015	0.43	+1.0
3,610,247	-		IAI47_17015	0.43	+0.7
3,610,247	-		IAI47_17015	0.43	-0.6
3,610,247	-		IAI47_17015	0.43	-0.6
3,610,247	-		IAI47_17015	0.43	+0.0
3,610,247	-		IAI47_17015	0.43	+0.4
3,610,247	-		IAI47_17015	0.43	+0.4
3,610,247	-		IAI47_17015	0.43	+1.6
3,610,247	-		IAI47_17015	0.43	-0.0
3,610,247	-		IAI47_17015	0.43	-1.4
3,610,247	-		IAI47_17015	0.43	+1.0
3,610,247	-		IAI47_17015	0.43	-0.2
3,610,247	-		IAI47_17015	0.43	+0.1
3,610,247	-		IAI47_17015	0.43	+2.0
3,610,247	-		IAI47_17015	0.43	+1.5
3,610,247	-		IAI47_17015	0.43	+0.6
3,610,247	-		IAI47_17015	0.43	+0.3
3,610,247	-		IAI47_17015	0.43	+0.2
3,610,247	-		IAI47_17015	0.43	-0.9
3,610,247	-		IAI47_17015	0.43	-0.0
3,610,247	-		IAI47_17015	0.43	-0.5
3,610,247	-		IAI47_17015	0.43	-0.4
3,610,286	+		IAI47_17015	0.48	-0.4
3,610,302	-		IAI47_17015	0.49	-0.6
3,610,302	-		IAI47_17015	0.49	+1.5
3,610,315	+		IAI47_17015	0.51	-0.0
3,610,315	+		IAI47_17015	0.51	-0.9
3,610,315	+		IAI47_17015	0.51	-1.0
3,610,315	+		IAI47_17015	0.51	+0.3
3,610,316	-		IAI47_17015	0.51	+0.4
3,610,316	-		IAI47_17015	0.51	+0.7
3,610,366	+		IAI47_17015	0.56	-0.1
3,610,366	+		IAI47_17015	0.56	-0.6
3,610,366	+		IAI47_17015	0.56	-0.1
3,610,366	+		IAI47_17015	0.56	+0.1
3,610,366	+		IAI47_17015	0.56	-0.3
3,610,367	+		IAI47_17015	0.56	-1.4
3,610,367	-		IAI47_17015	0.56	-0.8
3,610,372	+		IAI47_17015	0.57	-0.5
3,610,372	+		IAI47_17015	0.57	+1.6
3,610,372	+		IAI47_17015	0.57	+0.8
3,610,373	-		IAI47_17015	0.57	+1.3
3,610,373	-		IAI47_17015	0.57	+1.4
3,610,373	-		IAI47_17015	0.57	+1.2
3,610,373	-		IAI47_17015	0.57	-0.0
3,610,555	+		IAI47_17015	0.76	+1.7
3,610,556	-		IAI47_17015	0.76	-0.6
3,610,556	-		IAI47_17015	0.76	-0.3
3,610,579	+		IAI47_17015	0.79	-0.1
3,610,579	+		IAI47_17015	0.79	-0.0
3,610,580	-		IAI47_17015	0.79	+0.4
3,610,580	-		IAI47_17015	0.79	+0.1
3,610,667	+		IAI47_17015	0.88	-0.6
3,610,679	+		IAI47_17015	0.89	+0.4
3,610,680	-		IAI47_17015	0.89	-2.8
3,610,686	+		IAI47_17015	0.90	-0.9
3,610,686	+		IAI47_17015	0.90	-0.8
3,610,686	+		IAI47_17015	0.90	-0.3
3,610,686	+		IAI47_17015	0.90	+2.4
3,610,687	-				+1.0
3,610,687	-				-1.6
3,610,687	-				+0.1
3,610,687	-				-0.4
3,610,687	-				-1.8
3,610,727	+				-0.6
3,610,727	+				+0.2
3,610,727	+				+0.1
3,610,727	+				-0.2
3,610,728	-				+0.4
3,610,728	-				+2.2
3,610,728	-				+0.1
3,610,782	+				+2.1
3,610,783	-				-1.2
3,610,783	-				+0.8
3,610,783	-				+1.0
3,610,865	-		IAI47_17020	0.21	-1.6
3,610,865	-		IAI47_17020	0.21	-0.6
3,610,865	-		IAI47_17020	0.21	-1.6
3,610,865	-		IAI47_17020	0.21	-2.2
3,610,865	-		IAI47_17020	0.21	-1.6
3,610,865	-		IAI47_17020	0.21	-1.6
3,610,881	-		IAI47_17020	0.25	-2.9
3,610,881	-		IAI47_17020	0.25	-2.8
3,611,206	-				+0.6
3,611,253	-				-0.6
3,611,253	-				-2.4
3,611,253	-				+0.4
3,611,256	-				-2.9