Strain Fitness in Pantoea sp. MT58 around IAI47_15425

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,246,687	+				-1.2
3,246,687	+				+0.3
3,246,687	+				+0.4
3,246,688	-				-0.1
3,246,727	+				-0.4
3,246,727	+				-0.2
3,246,758	+				-1.0
3,246,759	-				-0.2
3,246,759	-				-0.6
3,246,870	+		IAI47_15415	0.27	-0.2
3,246,870	+		IAI47_15415	0.27	-0.4
3,246,870	+				-0.4
3,246,871	-		IAI47_15415	0.28	+0.1
3,246,871	-		IAI47_15415	0.28	+0.3
3,246,938	+		IAI47_15415	0.44	-0.6
3,246,951	+		IAI47_15415	0.47	-2.6
3,246,951	+		IAI47_15415	0.47	-1.2
3,246,952	-		IAI47_15415	0.47	-1.0
3,246,952	-		IAI47_15415	0.47	-0.6
3,246,952	-		IAI47_15415	0.47	-0.9
3,246,975	+		IAI47_15415	0.53	+1.6
3,247,013	+		IAI47_15415	0.62	-1.0
3,247,041	+		IAI47_15415	0.69	+0.4
3,247,042	-		IAI47_15415	0.69	+0.7
3,247,042	-		IAI47_15415	0.69	+1.4
3,247,042	-		IAI47_15415	0.69	+0.8
3,247,042	-		IAI47_15415	0.69	-0.1
3,247,042	-		IAI47_15415	0.69	-0.0
3,247,156	+				+0.9
3,247,157	-				+0.8
3,247,161	+				-2.3
3,247,161	+				-0.1
3,247,161	+				+2.2
3,247,161	+				-0.8
3,247,162	-				+0.7
3,247,162	-				-0.6
3,247,162	-				+0.4
3,247,162	-				-0.8
3,247,162	-				+0.5
3,247,162	-				+1.4
3,247,162	-				-1.2
3,247,162	-				-0.8
3,247,162	-				+1.7
3,247,162	-				+0.2
3,247,162	-				-0.4
3,247,162	-				+0.7
3,247,162	-				+1.4
3,247,187	+				-1.2
3,247,187	+				-1.1
3,247,187	+				+0.5
3,247,188	-				-0.2
3,247,188	-				+1.7
3,247,188	-				+0.0
3,247,188	-				-0.4
3,247,275	+				-2.0
3,247,276	-				+0.9
3,247,276	-				+0.5
3,247,276	-				-1.6
3,247,304	+				-0.6
3,247,304	+				-0.4
3,247,304	+				-0.2
3,247,305	-				+0.1
3,247,323	+				-1.4
3,247,324	-				+1.4
3,247,331	+				+0.1
3,247,336	+				-0.3
3,247,336	+				-1.4
3,247,336	+				-1.1
3,247,336	+				-1.2
3,247,336	+				-1.4
3,247,336	+				+2.8
3,247,336	+				-0.6
3,247,336	+				-0.5
3,247,336	+				+1.8
3,247,336	+				+0.4
3,247,336	+				+0.4
3,247,336	+				+0.4
3,247,336	+				-0.9
3,247,336	+				-0.6
3,247,336	+				+1.5
3,247,337	-				-0.0
3,247,337	-				+1.6
3,247,337	-				-1.1
3,247,337	-				-1.0
3,247,337	-				-1.0
3,247,337	-				-0.4
3,247,337	-				-0.4
3,247,337	-				-1.3
3,247,337	-				+1.8
3,247,337	-				+0.8
3,247,337	-				+0.5
3,247,338	+				+0.4
3,247,338	+				-0.0
3,247,338	+				+1.7
3,247,338	+				-0.1
3,247,338	+				+0.4
3,247,338	+				-1.1
3,247,338	+				+0.9
3,247,338	+				-0.2
3,247,338	+				-2.1
3,247,338	+				+0.6
3,247,338	+				-0.8
3,247,338	+				+0.1
3,247,339	-				+2.2
3,247,339	-				+1.5
3,247,339	-				-1.9
3,247,339	-				+0.1
3,247,339	-				-0.4
3,247,339	-				+0.2
3,247,339	-				+1.4
3,247,339	-				+1.1
3,247,358	+				-1.0
3,247,359	-				+0.4
3,247,359	-				+2.4
3,247,395	-				-0.6
3,247,404	+				-0.1
3,247,404	+				-1.0
3,247,404	+				+0.7
3,247,404	+				-0.4
3,247,404	+				+0.9
3,247,405	-		IAI47_15420	0.10	+2.5
3,247,405	-		IAI47_15420	0.10	+2.2
3,247,418	+		IAI47_15420	0.16	-1.4
3,247,443	+		IAI47_15420	0.29	-0.4
3,247,443	+		IAI47_15420	0.29	+0.4
3,247,443	+		IAI47_15420	0.29	-2.4
3,247,443	+		IAI47_15420	0.29	-0.4
3,247,443	+		IAI47_15420	0.29	-1.2
3,247,443	+		IAI47_15420	0.29	-0.1
3,247,443	+		IAI47_15420	0.29	-0.2
3,247,444	-		IAI47_15420	0.29	+0.0
3,247,444	-		IAI47_15420	0.29	-1.0
3,247,444	-		IAI47_15420	0.29	-1.1
3,247,444	-		IAI47_15420	0.29	+0.6
3,247,444	-		IAI47_15420	0.29	+0.9
3,247,444	-		IAI47_15420	0.29	+2.8
3,247,448	+		IAI47_15420	0.31	-1.2
3,247,448	+		IAI47_15420	0.31	+0.8
3,247,448	+		IAI47_15420	0.31	-1.2
3,247,448	+		IAI47_15420	0.31	+0.7
3,247,449	-		IAI47_15420	0.32	-0.6
3,247,449	-		IAI47_15420	0.32	+1.2
3,247,449	-		IAI47_15420	0.32	+1.4
3,247,449	-		IAI47_15420	0.32	-0.1
3,247,449	-		IAI47_15420	0.32	-2.5
3,247,486	+		IAI47_15420	0.50	+0.1
3,247,486	+		IAI47_15420	0.50	+0.9
3,247,486	+		IAI47_15420	0.50	-1.2
3,247,486	+		IAI47_15420	0.50	-0.2
3,247,486	+		IAI47_15420	0.50	-1.0
3,247,486	+		IAI47_15420	0.50	+0.5
3,247,486	+		IAI47_15420	0.50	+3.4
3,247,486	+		IAI47_15420	0.50	-2.4
3,247,486	+		IAI47_15420	0.50	+3.3
3,247,486	+		IAI47_15420	0.50	+0.4
3,247,486	+		IAI47_15420	0.50	-1.0
3,247,486	+		IAI47_15420	0.50	+0.6
3,247,486	+		IAI47_15420	0.50	-0.6
3,247,486	+		IAI47_15420	0.50	+0.5
3,247,486	+		IAI47_15420	0.50	+0.7
3,247,487	-		IAI47_15420	0.51	+0.6
3,247,487	-		IAI47_15420	0.51	-1.5
3,247,487	-		IAI47_15420	0.51	+2.6
3,247,487	-		IAI47_15420	0.51	+0.7
3,247,487	-		IAI47_15420	0.51	+1.2
3,247,487	-		IAI47_15420	0.51	+1.7
3,247,492	+		IAI47_15420	0.53	-0.4
3,247,492	+		IAI47_15420	0.53	-0.6
3,247,492	+		IAI47_15420	0.53	+1.4
3,247,493	-		IAI47_15420	0.54	+0.6
3,247,504	+		IAI47_15420	0.59	+0.8
3,247,504	+		IAI47_15420	0.59	-0.2
3,247,504	+		IAI47_15420	0.59	-1.6
3,247,512	+		IAI47_15420	0.63	-1.2
3,247,512	+		IAI47_15420	0.63	+0.0
3,247,512	+		IAI47_15420	0.63	+1.7
3,247,513	-		IAI47_15420	0.64	+0.6
3,247,513	-		IAI47_15420	0.64	+1.1
3,247,541	+		IAI47_15420	0.78	-0.6
3,247,552	+		IAI47_15420	0.83	-1.2
3,247,553	-		IAI47_15420	0.84	+2.5
3,247,553	-		IAI47_15420	0.84	-0.2
3,247,557	+		IAI47_15420	0.86	+1.5
3,247,557	+		IAI47_15420	0.86	-0.5
3,247,557	+		IAI47_15420	0.86	+1.2
3,247,557	+		IAI47_15420	0.86	+1.5
3,247,558	-		IAI47_15420	0.86	+0.1
3,247,571	+				-0.8
3,247,571	+				+0.2
3,247,571	+				+3.0
3,247,571	+				-0.1
3,247,571	+				+2.0
3,247,571	+				-0.6
3,247,571	+				-2.2
3,247,571	+				-0.6
3,247,571	+				+1.8
3,247,571	+				-0.2
3,247,572	-				+1.7
3,247,572	-				+1.4
3,247,572	-				+0.5
3,247,572	-				+0.1
3,247,572	-				-0.6
3,247,572	-				-0.3
3,247,572	-				-0.1
3,247,580	-				+0.9
3,247,581	-				-0.6
3,247,590	+				+1.8
3,247,591	-				+2.4
3,247,591	-				+0.1
3,247,598	+		IAI47_15425	0.10	+0.2
3,247,598	+		IAI47_15425	0.10	+1.4
3,247,598	+		IAI47_15425	0.10	+0.4
3,247,598	+		IAI47_15425	0.10	+2.2
3,247,598	+		IAI47_15425	0.10	+0.6
3,247,598	+		IAI47_15425	0.10	+0.9
3,247,598	+		IAI47_15425	0.10	+2.8
3,247,599	-		IAI47_15425	0.10	+0.5
3,247,599	-		IAI47_15425	0.10	+1.0
3,247,599	-		IAI47_15425	0.10	+0.7
3,247,614	+		IAI47_15425	0.16	-1.0
3,247,614	+		IAI47_15425	0.16	+0.9
3,247,619	+		IAI47_15425	0.18	-1.6
3,247,620	-		IAI47_15425	0.18	+0.4
3,247,643	+		IAI47_15425	0.27	+1.1
3,247,643	+		IAI47_15425	0.27	+0.6
3,247,644	-		IAI47_15425	0.28	-0.2
3,247,644	-		IAI47_15425	0.28	+0.2
3,247,644	-		IAI47_15425	0.28	+1.1
3,247,728	+		IAI47_15425	0.60	+1.1
3,247,728	+		IAI47_15425	0.60	+1.7
3,247,728	+		IAI47_15425	0.60	+0.9
3,247,729	-		IAI47_15425	0.60	-1.2
3,247,765	+		IAI47_15425	0.74	+1.8
3,247,766	-		IAI47_15425	0.74	-1.8
3,247,766	-		IAI47_15425	0.74	-0.8
3,247,766	-		IAI47_15425	0.74	+1.9
3,247,778	+		IAI47_15425	0.79	+1.0
3,247,778	+		IAI47_15425	0.79	-0.5
3,247,779	-		IAI47_15425	0.79	+1.6
3,247,830	+				+0.4
3,247,830	+				+0.0
3,247,831	-				+0.4
3,247,831	-				-2.0
3,247,833	+				-0.8
3,247,833	+				+0.4
3,247,834	-				-0.1
3,247,834	-				-0.2
3,247,868	-				-0.5
3,247,892	+				+1.2
3,247,892	+				+1.3
3,247,892	+				+3.5
3,247,892	+				-1.6
3,247,892	+				+0.9
3,247,893	-				+0.8
3,247,893	-				-0.8
3,247,896	-				-1.9
3,247,896	-				+0.1
3,247,896	-				+0.5
3,247,912	+		IAI47_15430	0.13	+0.3
3,247,912	+		IAI47_15430	0.13	-1.7
3,247,912	+		IAI47_15430	0.13	+0.1
3,247,912	+		IAI47_15430	0.13	+0.3
3,247,912	+		IAI47_15430	0.13	+0.1
3,247,912	+		IAI47_15430	0.13	-0.3
3,247,912	+		IAI47_15430	0.13	-1.3
3,247,912	+		IAI47_15430	0.13	+1.3
3,247,912	+		IAI47_15430	0.13	+2.6
3,247,913	-		IAI47_15430	0.13	-0.2
3,247,913	-		IAI47_15430	0.13	-0.2
3,247,913	-		IAI47_15430	0.13	+0.3
3,247,913	-		IAI47_15430	0.13	+1.8
3,247,913	-		IAI47_15430	0.13	+1.5
3,247,913	-		IAI47_15430	0.13	+0.7
3,247,913	-		IAI47_15430	0.13	-0.4
3,247,913	-		IAI47_15430	0.13	+1.0
3,247,913	-		IAI47_15430	0.13	-0.9
3,247,913	-		IAI47_15430	0.13	+0.1
3,247,914	+		IAI47_15430	0.13	+1.6
3,247,914	+		IAI47_15430	0.13	+1.7
3,247,914	+		IAI47_15430	0.13	+2.2
3,247,914	+		IAI47_15430	0.13	-0.1
3,247,914	+		IAI47_15430	0.13	+0.7
3,247,914	+		IAI47_15430	0.13	-0.7
3,247,914	+		IAI47_15430	0.13	+1.2
3,247,914	+		IAI47_15430	0.13	-1.7
3,247,914	+		IAI47_15430	0.13	+0.7
3,247,914	+		IAI47_15430	0.13	+0.2
3,247,915	-		IAI47_15430	0.14	+0.3
3,247,915	-		IAI47_15430	0.14	-1.5
3,247,915	-		IAI47_15430	0.14	+0.5
3,247,915	-		IAI47_15430	0.14	+0.1
3,247,915	-		IAI47_15430	0.14	+0.5
3,247,915	-		IAI47_15430	0.14	+0.6
3,247,915	-		IAI47_15430	0.14	+0.3
3,247,915	-		IAI47_15430	0.14	+1.0
3,247,936	+		IAI47_15430	0.20	+1.7
3,247,989	-		IAI47_15430	0.38	-0.5
3,247,989	-		IAI47_15430	0.38	-0.2
3,248,012	+		IAI47_15430	0.45	+0.0
3,248,012	+		IAI47_15430	0.45	-1.2
3,248,013	-		IAI47_15430	0.45	-0.3
3,248,013	-		IAI47_15430	0.45	+1.5
3,248,042	+		IAI47_15430	0.55	-0.9
3,248,043	-		IAI47_15430	0.55	+0.8
3,248,043	-		IAI47_15430	0.55	-1.7
3,248,144	-		IAI47_15430	0.88	+0.0
3,248,156	-				-1.3
3,248,156	-				-0.1
3,248,166	+				-1.2
3,248,182	+				+0.6
3,248,182	+				-0.5
3,248,182	+				-0.2
3,248,183	-				+2.7
3,248,183	-				+0.6
3,248,183	-				+0.1
3,248,183	-				-1.4