Strain Fitness in Pantoea sp. MT58 around IAI47_14620

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,082,792	+		IAI47_14615	0.47	-1.8
3,082,792	+		IAI47_14615	0.47	-0.6
3,082,793	-		IAI47_14615	0.47	+2.7
3,082,793	-		IAI47_14615	0.47	-1.6
3,082,793	-		IAI47_14615	0.47	+0.1
3,082,865	+		IAI47_14615	0.52	-1.4
3,082,866	-		IAI47_14615	0.52	+0.8
3,082,873	+		IAI47_14615	0.52	-0.3
3,082,873	+		IAI47_14615	0.52	-0.9
3,082,873	+		IAI47_14615	0.52	-0.0
3,082,874	-		IAI47_14615	0.52	+0.5
3,082,906	+		IAI47_14615	0.54	+1.0
3,082,906	+		IAI47_14615	0.54	+0.6
3,082,906	+		IAI47_14615	0.54	+1.4
3,082,906	+		IAI47_14615	0.54	-0.4
3,082,907	-		IAI47_14615	0.54	-0.4
3,082,907	-		IAI47_14615	0.54	+0.4
3,082,907	-		IAI47_14615	0.54	-0.2
3,082,907	-		IAI47_14615	0.54	+0.4
3,082,907	-		IAI47_14615	0.54	+0.7
3,082,936	-		IAI47_14615	0.56	-0.3
3,082,962	+		IAI47_14615	0.57	-0.5
3,082,962	+		IAI47_14615	0.57	-0.6
3,082,962	+		IAI47_14615	0.57	-1.5
3,082,963	-		IAI47_14615	0.57	+3.7
3,082,963	-		IAI47_14615	0.57	-2.5
3,082,963	-		IAI47_14615	0.57	+2.0
3,083,001	-		IAI47_14615	0.60	+0.4
3,083,001	-		IAI47_14615	0.60	+2.2
3,083,047	+		IAI47_14615	0.62	+0.8
3,083,047	+		IAI47_14615	0.62	-0.3
3,083,048	-		IAI47_14615	0.62	+0.2
3,083,048	-		IAI47_14615	0.62	-0.2
3,083,062	-		IAI47_14615	0.63	+1.5
3,083,062	-		IAI47_14615	0.63	-1.6
3,083,110	-		IAI47_14615	0.66	+0.1
3,083,110	-		IAI47_14615	0.66	-1.6
3,083,110	-		IAI47_14615	0.66	+1.2
3,083,134	-		IAI47_14615	0.67	+0.4
3,083,134	-		IAI47_14615	0.67	+0.8
3,083,158	+		IAI47_14615	0.69	-1.7
3,083,158	+		IAI47_14615	0.69	+0.8
3,083,159	-		IAI47_14615	0.69	+2.0
3,083,159	-		IAI47_14615	0.69	+1.7
3,083,201	+		IAI47_14615	0.71	-0.6
3,083,201	+		IAI47_14615	0.71	-0.0
3,083,202	-		IAI47_14615	0.71	+0.0
3,083,220	+		IAI47_14615	0.72	+0.6
3,083,221	-		IAI47_14615	0.72	-0.4
3,083,221	-		IAI47_14615	0.72	-0.2
3,083,254	-		IAI47_14615	0.74	-1.4
3,083,280	+		IAI47_14615	0.76	-1.2
3,083,281	-		IAI47_14615	0.76	-0.5
3,083,281	-		IAI47_14615	0.76	-0.4
3,083,281	-		IAI47_14615	0.76	-1.2
3,083,335	+		IAI47_14615	0.79	-0.8
3,083,336	-		IAI47_14615	0.79	+0.8
3,083,336	-		IAI47_14615	0.79	-0.2
3,083,377	+		IAI47_14615	0.81	-0.0
3,083,377	+		IAI47_14615	0.81	+0.4
3,083,378	-		IAI47_14615	0.82	-0.4
3,083,378	-		IAI47_14615	0.82	+0.4
3,083,378	-		IAI47_14615	0.82	-0.2
3,083,409	+		IAI47_14615	0.83	+0.8
3,083,410	-		IAI47_14615	0.83	+1.6
3,083,468	-		IAI47_14615	0.87	-1.3
3,083,497	+		IAI47_14615	0.88	+0.4
3,083,498	-		IAI47_14615	0.88	-0.8
3,083,498	-		IAI47_14615	0.88	+2.0
3,083,498	-		IAI47_14615	0.88	+1.4
3,083,519	+		IAI47_14615	0.90	+0.5
3,083,519	+		IAI47_14615	0.90	+0.1
3,083,564	+				+1.4
3,083,701	+				+1.0
3,083,701	+				+0.4
3,083,701	+				+1.8
3,083,701	+				-0.4
3,083,701	+				-0.2
3,083,702	-				-0.0
3,083,702	-				-0.4
3,083,706	+				-0.9
3,083,706	+				-0.4
3,083,707	-				-0.6
3,083,707	-				-0.2
3,083,707	-				-1.6
3,083,707	-				-0.5
3,083,719	-				+1.0
3,083,753	+				-0.2
3,083,754	-				+0.4
3,083,754	-				-1.6
3,083,781	+				+0.2
3,083,781	+				-0.3
3,083,781	+				-0.8
3,083,782	-				+2.7
3,083,801	+				+1.2
3,083,801	+				-1.2
3,083,802	-				-0.1
3,083,802	-				+0.5
3,083,809	+		IAI47_14620	0.10	+1.2
3,083,809	+		IAI47_14620	0.10	-0.6
3,083,809	+		IAI47_14620	0.10	-2.1
3,083,809	+		IAI47_14620	0.10	-0.2
3,083,809	+		IAI47_14620	0.10	-1.4
3,083,809	+		IAI47_14620	0.10	+1.6
3,083,809	+		IAI47_14620	0.10	+0.6
3,083,809	+		IAI47_14620	0.10	-1.6
3,083,809	+		IAI47_14620	0.10	+0.1
3,083,809	+		IAI47_14620	0.10	+0.4
3,083,810	-		IAI47_14620	0.10	+1.9
3,083,810	-		IAI47_14620	0.10	+2.9
3,083,810	-		IAI47_14620	0.10	-0.9
3,083,810	-		IAI47_14620	0.10	-0.4
3,083,810	-		IAI47_14620	0.10	+2.4
3,083,810	-		IAI47_14620	0.10	-1.1
3,083,810	-		IAI47_14620	0.10	+2.1
3,083,811	-		IAI47_14620	0.11	-1.4
3,083,839	+		IAI47_14620	0.15	+2.1
3,083,889	+		IAI47_14620	0.22	-1.8
3,083,890	-		IAI47_14620	0.22	-0.2
3,083,910	+		IAI47_14620	0.25	-1.5
3,083,911	-		IAI47_14620	0.25	-0.6
3,083,915	+		IAI47_14620	0.26	-0.5
3,083,967	+		IAI47_14620	0.33	+1.0
3,083,967	+		IAI47_14620	0.33	+0.4
3,083,986	+		IAI47_14620	0.36	+1.1
3,083,986	+		IAI47_14620	0.36	-2.5
3,083,986	+		IAI47_14620	0.36	-0.6
3,083,987	-		IAI47_14620	0.36	-0.4
3,083,987	-		IAI47_14620	0.36	+1.5
3,083,987	-		IAI47_14620	0.36	+1.3
3,083,987	-		IAI47_14620	0.36	-1.6
3,084,015	+		IAI47_14620	0.40	+1.1
3,084,037	-		IAI47_14620	0.43	+1.4
3,084,037	-		IAI47_14620	0.43	+0.7
3,084,037	-		IAI47_14620	0.43	-0.1
3,084,065	-		IAI47_14620	0.47	-0.6
3,084,070	+		IAI47_14620	0.48	+0.3
3,084,071	-		IAI47_14620	0.48	-0.6
3,084,257	-		IAI47_14620	0.75	-0.5
3,084,278	+		IAI47_14620	0.78	+0.4
3,084,278	+		IAI47_14620	0.78	+1.4
3,084,278	+		IAI47_14620	0.78	-0.9
3,084,278	+		IAI47_14620	0.78	+0.1
3,084,279	-		IAI47_14620	0.78	-0.1
3,084,279	-		IAI47_14620	0.78	+1.0
3,084,301	+		IAI47_14620	0.81	+0.8
3,084,301	+		IAI47_14620	0.81	+1.8
3,084,301	+		IAI47_14620	0.81	+0.5
3,084,301	+		IAI47_14620	0.81	+1.5
3,084,302	-		IAI47_14620	0.81	-0.6
3,084,302	-		IAI47_14620	0.81	-1.0
3,084,302	-		IAI47_14620	0.81	-1.9
3,084,302	-		IAI47_14620	0.81	-0.2
3,084,303	+		IAI47_14620	0.81	-1.4
3,084,304	-		IAI47_14620	0.81	+0.4
3,084,304	-		IAI47_14620	0.81	-0.6
3,084,358	-		IAI47_14620	0.89	-0.3
3,084,374	-				-0.2
3,084,391	-				+0.4
3,084,395	+				-0.8
3,084,395	+				+1.3
3,084,395	+				+0.1
3,084,395	+				+0.4
3,084,396	-				-0.5
3,084,396	-				-0.5
3,084,396	-				-1.2
3,084,414	+				+1.1
3,084,415	-				+1.5
3,084,426	+				+0.6
3,084,426	+				+1.4
3,084,426	+				-0.0
3,084,427	-				-1.9
3,084,430	+				-0.4
3,084,430	+				-0.1
3,084,430	+				+0.6
3,084,431	-				-0.2
3,084,431	-				+1.8
3,084,460	+				+0.2
3,084,461	-				-0.9
3,084,483	+				+1.4
3,084,484	-				-1.6
3,084,484	-				-0.0
3,084,484	-				-1.4
3,084,512	+				+0.4
3,084,512	+				-0.3
3,084,513	-				-0.4
3,084,513	-				+0.3
3,084,556	+		IAI47_14625	0.19	+2.8
3,084,625	+		IAI47_14625	0.36	+0.4
3,084,626	-		IAI47_14625	0.36	+0.4
3,084,637	+		IAI47_14625	0.39	+0.8
3,084,638	-		IAI47_14625	0.39	-2.6
3,084,668	-		IAI47_14625	0.47	+0.4
3,084,674	+		IAI47_14625	0.48	-0.9
3,084,675	-		IAI47_14625	0.48	+0.7
3,084,675	-		IAI47_14625	0.48	+0.7
3,084,702	+		IAI47_14625	0.55	-0.2
3,084,702	+		IAI47_14625	0.55	-0.9
3,084,703	-		IAI47_14625	0.55	-0.0
3,084,703	-		IAI47_14625	0.55	-2.5
3,084,813	+		IAI47_14625	0.83	+1.4
3,084,813	+		IAI47_14625	0.83	+0.5
3,084,813	+		IAI47_14625	0.83	-1.6
3,084,814	-		IAI47_14625	0.83	+0.2
3,084,814	-		IAI47_14625	0.83	+0.4
3,084,814	-		IAI47_14625	0.83	+1.5
3,084,814	-		IAI47_14625	0.83	+1.5
3,084,814	-		IAI47_14625	0.83	+1.2
3,084,814	-		IAI47_14625	0.83	-0.1
3,084,837	+		IAI47_14625	0.89	+0.8
3,084,837	+		IAI47_14625	0.89	+0.4
3,084,838	-		IAI47_14625	0.89	+0.6
3,084,838	-		IAI47_14625	0.89	+3.0
3,084,852	+				+1.7
3,084,853	-				-0.1
3,084,866	+				-1.2
3,084,866	+				+0.5
3,084,866	+				+0.9
3,084,866	+				-0.3
3,084,866	+				-0.3
3,084,866	+				+1.5
3,084,867	-				+0.6
3,084,867	-				+2.1
3,084,867	-				+0.1
3,084,897	+				+2.0
3,084,898	-				+0.4
3,084,902	+				-0.4
3,084,902	+				+1.0
3,084,902	+				-0.9
3,084,902	+				-0.4
3,084,902	+				-0.8
3,084,902	+				+2.3
3,084,903	-				-1.1
3,084,903	-				-0.6
3,084,903	-				-0.2
3,084,903	-				-0.9
3,084,903	-				-0.4
3,084,908	-				-1.4
3,084,931	-				-0.6
3,084,957	+				-0.6
3,084,957	+				-1.4
3,084,957	+				+1.0
3,084,957	+				+0.4
3,084,957	+				+0.0
3,084,957	+				+0.5
3,084,957	+				+0.1
3,084,958	-				-0.0
3,084,958	-				+1.4
3,084,974	+				+1.2
3,084,974	+				+0.4
3,084,975	-				+2.1
3,084,975	-				+0.1
3,084,975	-				+1.6
3,085,011	+				-0.6
3,085,011	+				-0.6
3,085,011	+				+0.2
3,085,012	-				+2.7
3,085,012	-				+1.4
3,085,012	-				-1.2
3,085,044	-		IAI47_14630	0.18	+1.0
3,085,073	-		IAI47_14630	0.26	+1.4
3,085,084	+		IAI47_14630	0.29	-1.6
3,085,085	-		IAI47_14630	0.29	+0.7
3,085,085	-		IAI47_14630	0.29	+1.5
3,085,085	-		IAI47_14630	0.29	+0.7
3,085,085	-		IAI47_14630	0.29	-0.4
3,085,117	-		IAI47_14630	0.38	+1.2
3,085,117	-		IAI47_14630	0.38	+0.4
3,085,117	-		IAI47_14630	0.38	+0.7
3,085,163	+		IAI47_14630	0.51	+1.3
3,085,163	+		IAI47_14630	0.51	+1.4
3,085,164	-		IAI47_14630	0.52	-0.5
3,085,188	+		IAI47_14630	0.58	+1.4
3,085,189	-		IAI47_14630	0.59	-0.8
3,085,189	-		IAI47_14630	0.59	+0.4
3,085,215	+		IAI47_14630	0.66	-0.6
3,085,271	+		IAI47_14630	0.82	-0.0
3,085,271	+		IAI47_14630	0.82	+0.4
3,085,271	+		IAI47_14630	0.82	-0.1
3,085,272	-		IAI47_14630	0.82	-0.0
3,085,272	-		IAI47_14630	0.82	+1.4
3,085,307	-				-1.2
3,085,322	+				+0.1
3,085,322	+				-0.1
3,085,323	-				+0.1
3,085,328	+				+0.2
3,085,356	-				+0.5