Strain Fitness in Pantoea sp. MT58 around IAI47_12950

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,739,625	+		IAI47_12945	0.60	-3.1
2,739,625	+		IAI47_12945	0.60	+0.2
2,739,644	+		IAI47_12945	0.60	-2.5
2,739,644	+		IAI47_12945	0.60	-2.7
2,739,644	+		IAI47_12945	0.60	-2.8
2,739,682	+		IAI47_12945	0.62	-2.3
2,739,682	+		IAI47_12945	0.62	-0.7
2,739,683	-		IAI47_12945	0.62	-1.7
2,739,683	-		IAI47_12945	0.62	-0.4
2,739,698	-		IAI47_12945	0.63	-2.7
2,739,771	+		IAI47_12945	0.66	-1.5
2,739,771	+		IAI47_12945	0.66	-1.0
2,739,771	+		IAI47_12945	0.66	-1.7
2,739,772	-		IAI47_12945	0.66	+2.3
2,739,811	-		IAI47_12945	0.68	-0.5
2,739,814	+		IAI47_12945	0.68	-2.1
2,739,814	+		IAI47_12945	0.68	-1.3
2,739,814	+		IAI47_12945	0.68	-1.1
2,739,814	+		IAI47_12945	0.68	-3.5
2,739,839	+		IAI47_12945	0.69	-1.1
2,739,889	+		IAI47_12945	0.71	-1.3
2,739,890	-		IAI47_12945	0.71	+0.3
2,739,952	+		IAI47_12945	0.74	-1.3
2,739,952	+		IAI47_12945	0.74	-1.5
2,739,952	+		IAI47_12945	0.74	-1.7
2,739,952	+		IAI47_12945	0.74	-1.3
2,739,952	+		IAI47_12945	0.74	-1.4
2,739,952	+		IAI47_12945	0.74	-0.7
2,739,952	+		IAI47_12945	0.74	-0.6
2,739,952	+		IAI47_12945	0.74	-0.6
2,739,952	+		IAI47_12945	0.74	+1.3
2,739,953	-		IAI47_12945	0.74	-0.7
2,739,953	-		IAI47_12945	0.74	+2.3
2,739,953	-		IAI47_12945	0.74	-0.7
2,739,953	-		IAI47_12945	0.74	-1.7
2,739,953	-		IAI47_12945	0.74	-2.7
2,739,955	+		IAI47_12945	0.74	-0.7
2,739,955	+		IAI47_12945	0.74	-4.4
2,739,955	+		IAI47_12945	0.74	-1.6
2,739,955	+		IAI47_12945	0.74	-1.0
2,739,956	-		IAI47_12945	0.74	-0.8
2,740,018	+		IAI47_12945	0.77	+1.9
2,740,018	+		IAI47_12945	0.77	-2.0
2,740,018	+		IAI47_12945	0.77	-1.7
2,740,018	+		IAI47_12945	0.77	+1.3
2,740,019	-		IAI47_12945	0.77	-3.0
2,740,179	+		IAI47_12945	0.84	-1.3
2,740,179	+		IAI47_12945	0.84	-1.1
2,740,179	+		IAI47_12945	0.84	-0.7
2,740,180	-		IAI47_12945	0.84	-0.3
2,740,180	-		IAI47_12945	0.84	+0.3
2,740,180	-		IAI47_12945	0.84	-0.5
2,740,402	+				+0.9
2,740,435	+				-0.4
2,740,510	+				-1.8
2,740,511	-				-3.1
2,740,514	+				-1.3
2,740,515	-				-0.7
2,740,515	-				-1.7
2,740,544	+				-0.7
2,740,545	-				-1.5
2,740,545	-				+1.3
2,740,570	+				-0.8
2,740,570	+				-1.8
2,740,570	+				-0.4
2,740,571	-				-1.1
2,740,581	+				-0.7
2,740,581	+				-3.0
2,740,581	+				-1.0
2,740,582	-				-1.3
2,740,582	-				+0.3
2,740,582	-				-0.5
2,740,582	-				-0.2
2,740,582	-				+1.1
2,740,584	-				+2.2
2,740,584	-				+0.3
2,740,584	-				-0.7
2,740,613	+				+0.0
2,740,613	+				-2.7
2,740,614	-				-2.5
2,740,614	-				+0.3
2,740,645	+		IAI47_12950	0.15	-0.3
2,740,645	+		IAI47_12950	0.15	-1.3
2,740,645	+		IAI47_12950	0.15	-1.4
2,740,645	+		IAI47_12950	0.15	+0.3
2,740,645	+		IAI47_12950	0.15	-0.7
2,740,645	+		IAI47_12950	0.15	-0.7
2,740,646	-		IAI47_12950	0.16	+0.3
2,740,646	-		IAI47_12950	0.16	-2.5
2,740,646	-		IAI47_12950	0.16	-1.4
2,740,689	-		IAI47_12950	0.29	+0.6
2,740,689	-		IAI47_12950	0.29	-1.7
2,740,689	-		IAI47_12950	0.29	+0.1
2,740,692	+		IAI47_12950	0.30	-1.0
2,740,692	+		IAI47_12950	0.30	-0.7
2,740,692	+		IAI47_12950	0.30	+1.8
2,740,692	+		IAI47_12950	0.30	-0.4
2,740,692	+		IAI47_12950	0.30	-0.1
2,740,693	-		IAI47_12950	0.30	+0.3
2,740,693	-		IAI47_12950	0.30	+1.3
2,740,693	-		IAI47_12950	0.30	+0.5
2,740,693	-		IAI47_12950	0.30	+0.9
2,740,717	+		IAI47_12950	0.38	-2.7
2,740,717	+		IAI47_12950	0.38	+0.3
2,740,718	-		IAI47_12950	0.38	-1.1
2,740,759	+		IAI47_12950	0.51	-0.3
2,740,759	+		IAI47_12950	0.51	-0.5
2,740,760	-		IAI47_12950	0.51	+1.3
2,740,760	-		IAI47_12950	0.51	-0.3
2,740,787	+		IAI47_12950	0.60	-0.1
2,740,787	+		IAI47_12950	0.60	-1.0
2,740,788	-		IAI47_12950	0.60	-1.3
2,740,788	-		IAI47_12950	0.60	+1.1
2,740,799	+		IAI47_12950	0.63	-0.2
2,740,799	+		IAI47_12950	0.63	+0.3
2,740,800	-		IAI47_12950	0.64	-0.2
2,740,800	-		IAI47_12950	0.64	-1.3
2,740,800	-		IAI47_12950	0.64	-0.3
2,740,800	-		IAI47_12950	0.64	-0.7
2,740,800	-		IAI47_12950	0.64	-1.7
2,740,805	+		IAI47_12950	0.65	+0.9
2,740,805	+		IAI47_12950	0.65	-2.0
2,740,805	+		IAI47_12950	0.65	+1.3
2,740,805	+		IAI47_12950	0.65	-0.6
2,740,805	+		IAI47_12950	0.65	-0.5
2,740,805	+		IAI47_12950	0.65	-1.5
2,740,805	+		IAI47_12950	0.65	-1.0
2,740,805	+		IAI47_12950	0.65	-1.2
2,740,805	+		IAI47_12950	0.65	-0.7
2,740,805	+		IAI47_12950	0.65	+0.6
2,740,806	-		IAI47_12950	0.65	-1.3
2,740,806	-		IAI47_12950	0.65	-1.7
2,740,806	-		IAI47_12950	0.65	-0.9
2,740,806	-		IAI47_12950	0.65	-2.5
2,740,806	-		IAI47_12950	0.65	+0.2
2,740,806	-		IAI47_12950	0.65	-1.3
2,740,806	-		IAI47_12950	0.65	-0.1
2,740,806	-		IAI47_12950	0.65	-0.5
2,740,806	-		IAI47_12950	0.65	-2.1
2,740,806	-		IAI47_12950	0.65	+1.3
2,740,806	-		IAI47_12950	0.65	-0.3
2,740,806	-		IAI47_12950	0.65	-1.3
2,740,807	+		IAI47_12950	0.66	-0.1
2,740,807	+		IAI47_12950	0.66	+2.3
2,740,807	+		IAI47_12950	0.66	-2.4
2,740,807	+		IAI47_12950	0.66	-0.7
2,740,807	+		IAI47_12950	0.66	-2.3
2,740,808	-		IAI47_12950	0.66	+0.7
2,740,808	-		IAI47_12950	0.66	-0.4
2,740,833	-		IAI47_12950	0.74	-1.3
2,740,833	-		IAI47_12950	0.74	-1.8
2,740,833	-		IAI47_12950	0.74	-1.7
2,740,833	-		IAI47_12950	0.74	-3.0
2,740,833	-		IAI47_12950	0.74	-1.7
2,740,833	-		IAI47_12950	0.74	-1.3
2,740,834	+		IAI47_12950	0.74	-0.7
2,740,834	+		IAI47_12950	0.74	+0.9
2,740,834	+		IAI47_12950	0.74	-1.0
2,740,834	+		IAI47_12950	0.74	-1.2
2,740,834	+		IAI47_12950	0.74	-1.8
2,740,835	-		IAI47_12950	0.74	-0.1
2,740,835	-		IAI47_12950	0.74	-0.2
2,740,835	-		IAI47_12950	0.74	+0.6
2,740,835	-		IAI47_12950	0.74	-2.3
2,740,835	-		IAI47_12950	0.74	-0.3
2,740,835	-		IAI47_12950	0.74	+0.3
2,740,838	+		IAI47_12950	0.75	-2.0
2,740,838	+		IAI47_12950	0.75	-1.4
2,740,838	+		IAI47_12950	0.75	-1.8
2,740,838	+		IAI47_12950	0.75	-1.3
2,740,838	+		IAI47_12950	0.75	-1.0
2,740,838	+		IAI47_12950	0.75	+0.8
2,740,838	+		IAI47_12950	0.75	-0.7
2,740,838	+		IAI47_12950	0.75	-0.4
2,740,838	+		IAI47_12950	0.75	-1.3
2,740,838	+		IAI47_12950	0.75	-1.4
2,740,838	+		IAI47_12950	0.75	-0.8
2,740,838	+		IAI47_12950	0.75	-0.3
2,740,838	+		IAI47_12950	0.75	+0.1
2,740,838	+		IAI47_12950	0.75	-0.5
2,740,838	+		IAI47_12950	0.75	+0.0
2,740,838	+		IAI47_12950	0.75	-1.4
2,740,838	+		IAI47_12950	0.75	-0.6
2,740,838	+		IAI47_12950	0.75	-2.1
2,740,839	-		IAI47_12950	0.76	-1.4
2,740,839	-		IAI47_12950	0.76	-0.9
2,740,839	-		IAI47_12950	0.76	-0.2
2,740,839	-		IAI47_12950	0.76	-0.6
2,740,839	-		IAI47_12950	0.76	+0.3
2,740,839	-		IAI47_12950	0.76	-0.9
2,740,839	-		IAI47_12950	0.76	-1.3
2,740,839	-		IAI47_12950	0.76	-2.3
2,740,839	-		IAI47_12950	0.76	-0.7
2,740,839	-		IAI47_12950	0.76	+0.0
2,740,839	-		IAI47_12950	0.76	-0.8
2,740,839	-		IAI47_12950	0.76	+0.3
2,740,839	-		IAI47_12950	0.76	+2.3
2,740,839	-		IAI47_12950	0.76	-1.5
2,740,839	-		IAI47_12950	0.76	+0.3
2,740,839	-		IAI47_12950	0.76	-1.0
2,740,839	-		IAI47_12950	0.76	+0.3
2,740,839	-		IAI47_12950	0.76	-1.8
2,740,839	-		IAI47_12950	0.76	+0.9
2,740,839	-		IAI47_12950	0.76	+1.9
2,740,839	-		IAI47_12950	0.76	-1.4
2,740,839	-		IAI47_12950	0.76	-1.3
2,740,839	-		IAI47_12950	0.76	+1.6
2,740,839	-		IAI47_12950	0.76	-0.5
2,740,839	-		IAI47_12950	0.76	+0.1
2,740,839	-		IAI47_12950	0.76	-1.7
2,740,851	+		IAI47_12950	0.79	+0.2
2,740,863	+		IAI47_12950	0.83	-0.7
2,740,863	+		IAI47_12950	0.83	-0.3
2,740,864	-		IAI47_12950	0.83	-0.4
2,740,864	-		IAI47_12950	0.83	-0.8
2,740,864	-		IAI47_12950	0.83	+0.9
2,740,864	-		IAI47_12950	0.83	-0.5
2,740,892	+				-1.4
2,740,893	-				+0.2
2,740,916	+				+0.0
2,740,916	+				-1.5
2,740,916	+				-1.1
2,740,916	+				-1.3
2,740,916	+				+0.9
2,740,916	+				-1.0
2,740,916	+				+0.3
2,740,942	-				+0.9
2,740,948	+				+0.3
2,740,948	+				-0.4
2,740,948	+				-0.2
2,740,949	-				+0.1
2,740,956	+				+0.1
2,740,956	+				-0.7
2,740,971	+				-0.8
2,740,971	+				+0.1
2,740,971	+				+1.7
2,740,971	+				+0.3
2,740,972	-				-0.2
2,741,020	-				-1.5
2,741,020	-				+0.1
2,741,060	-				-0.1
2,741,132	+				+0.7
2,741,132	+				+0.8
2,741,132	+				+0.8
2,741,133	-				+0.3
2,741,133	-				-0.5
2,741,139	+				+0.3
2,741,139	+				+0.3
2,741,139	+				-0.2
2,741,140	-				-0.3
2,741,140	-				+0.3
2,741,140	-				+2.1
2,741,140	-				-0.8
2,741,140	-				-0.7
2,741,140	-				-0.4
2,741,164	-				-0.7
2,741,164	-				+0.3
2,741,164	-				+2.0
2,741,199	+				+3.4
2,741,199	+				+2.0
2,741,199	+				+1.9
2,741,199	+				-1.0
2,741,199	+				+0.9
2,741,199	+				-0.7
2,741,200	-				-0.3
2,741,200	-				+0.3
2,741,200	-				+0.7
2,741,200	-				+0.3
2,741,200	-				+1.1
2,741,200	-				+0.6
2,741,200	-				+2.3
2,741,203	+				-1.0
2,741,203	+				+1.1
2,741,204	-				+0.7
2,741,204	-				+0.1
2,741,204	-				+2.1
2,741,204	-				-0.9
2,741,204	-				+0.5
2,741,204	-				-0.8
2,741,206	-				+1.0
2,741,206	-				-1.0
2,741,226	+				-1.3
2,741,226	+				+0.4
2,741,226	+				+1.5
2,741,226	+				+0.3
2,741,226	+				+0.6
2,741,226	+				+0.3
2,741,227	-				+0.7
2,741,227	-				+0.7
2,741,227	-				+1.9
2,741,227	-				-2.0
2,741,227	-				-0.6
2,741,250	+				+0.0
2,741,250	+				+0.7
2,741,250	+				-1.0
2,741,250	+				-1.0
2,741,251	-				-0.5
2,741,251	-				+1.0
2,741,262	+		IAI47_12955	0.13	-0.7
2,741,262	+		IAI47_12955	0.13	-0.5
2,741,263	-		IAI47_12955	0.13	-1.0
2,741,263	-		IAI47_12955	0.13	+1.1
2,741,283	+		IAI47_12955	0.22	-2.0
2,741,283	+		IAI47_12955	0.22	-0.3
2,741,283	+		IAI47_12955	0.22	-2.4
2,741,284	-		IAI47_12955	0.23	+0.1
2,741,284	-		IAI47_12955	0.23	+0.7
2,741,310	+		IAI47_12955	0.34	+0.7
2,741,311	-		IAI47_12955	0.35	+0.5
2,741,323	+		IAI47_12955	0.40	+0.7
2,741,323	+		IAI47_12955	0.40	-0.3
2,741,324	-		IAI47_12955	0.40	-0.1
2,741,324	-		IAI47_12955	0.40	+0.4
2,741,324	-		IAI47_12955	0.40	-0.1
2,741,357	+		IAI47_12955	0.55	-1.3
2,741,441	+				+0.3
2,741,441	+				+0.9
2,741,442	-				+0.3
2,741,442	-				-0.9
2,741,459	-				-0.3
2,741,476	-				+0.7
2,741,486	-				-1.7
2,741,486	-				-1.3
2,741,546	+				+2.1
2,741,546	+				-1.0
2,741,546	+				+3.3
2,741,546	+				+3.1
2,741,547	-				+1.1
2,741,547	-				+0.6
2,741,691	+				+0.9
2,741,691	+				-1.3
2,741,694	+				-2.3
2,741,695	-				-0.3
2,741,695	-				-1.9
2,741,695	-				+0.9
2,741,697	+				-1.1
2,741,697	+				-0.7
2,741,698	-				+0.3
2,741,698	-				-0.3
2,741,698	-				+1.1
2,741,698	-				+0.9
2,741,698	-				+1.3
2,741,747	+		IAI47_12960	0.12	-0.9
2,741,747	+		IAI47_12960	0.12	+0.9
2,741,748	-		IAI47_12960	0.12	-0.3
2,741,748	-		IAI47_12960	0.12	+0.1
2,741,748	-		IAI47_12960	0.12	+0.6
2,741,748	-		IAI47_12960	0.12	-0.3
2,741,771	+		IAI47_12960	0.14	-0.3
2,741,771	+		IAI47_12960	0.14	-1.0
2,741,771	+		IAI47_12960	0.14	+1.4
2,741,771	+		IAI47_12960	0.14	+0.3
2,741,772	-		IAI47_12960	0.14	+0.7
2,741,772	-		IAI47_12960	0.14	-0.7
2,741,800	+		IAI47_12960	0.16	+0.6
2,741,800	+		IAI47_12960	0.16	-0.3
2,741,800	+		IAI47_12960	0.16	-0.8
2,741,840	-		IAI47_12960	0.18	+1.5
2,741,840	-		IAI47_12960	0.18	-1.3
2,741,864	+		IAI47_12960	0.19	-0.7
2,741,864	+		IAI47_12960	0.19	+0.6
2,741,864	+		IAI47_12960	0.19	-0.4
2,741,865	-		IAI47_12960	0.20	-0.3
2,741,868	+		IAI47_12960	0.20	-1.3
2,741,868	+		IAI47_12960	0.20	+0.7
2,741,868	+		IAI47_12960	0.20	+0.1
2,741,869	-		IAI47_12960	0.20	-0.3
2,741,869	-		IAI47_12960	0.20	-1.3
2,741,869	-		IAI47_12960	0.20	+1.7
2,741,869	-		IAI47_12960	0.20	+1.6
2,741,869	-		IAI47_12960	0.20	+0.6
2,741,869	-		IAI47_12960	0.20	+0.4
2,741,869	-		IAI47_12960	0.20	+0.9
2,741,869	-		IAI47_12960	0.20	+0.9
2,741,871	+		IAI47_12960	0.20	-0.4