Strain Fitness in Pantoea sp. MT58 around IAI47_12685

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,666,374	+		IAI47_12680	0.25	-1.3
2,666,375	-		IAI47_12680	0.25	+1.1
2,666,379	+		IAI47_12680	0.25	+3.8
2,666,380	-		IAI47_12680	0.25	+2.0
2,666,388	+		IAI47_12680	0.26	+1.6
2,666,388	+		IAI47_12680	0.26	+0.1
2,666,388	+		IAI47_12680	0.26	-0.4
2,666,388	+		IAI47_12680	0.26	+0.3
2,666,389	-		IAI47_12680	0.26	+0.3
2,666,389	-		IAI47_12680	0.26	-0.5
2,666,389	-		IAI47_12680	0.26	+1.5
2,666,389	-		IAI47_12680	0.26	+1.2
2,666,389	-		IAI47_12680	0.26	+0.7
2,666,460	+		IAI47_12680	0.32	-0.3
2,666,460	+		IAI47_12680	0.32	+0.8
2,666,460	+		IAI47_12680	0.32	+0.0
2,666,463	+		IAI47_12680	0.32	-1.0
2,666,463	+		IAI47_12680	0.32	+1.9
2,666,463	+		IAI47_12680	0.32	-0.7
2,666,463	+		IAI47_12680	0.32	-0.7
2,666,463	+		IAI47_12680	0.32	-0.2
2,666,464	-		IAI47_12680	0.32	+0.4
2,666,464	-		IAI47_12680	0.32	+0.7
2,666,466	+		IAI47_12680	0.32	-1.5
2,666,466	+		IAI47_12680	0.32	+1.6
2,666,466	+		IAI47_12680	0.32	-0.7
2,666,466	+		IAI47_12680	0.32	-0.3
2,666,467	-		IAI47_12680	0.32	-1.1
2,666,467	-		IAI47_12680	0.32	-2.1
2,666,526	+		IAI47_12680	0.37	-0.7
2,666,528	+		IAI47_12680	0.37	+0.3
2,666,528	+		IAI47_12680	0.37	+0.8
2,666,528	+		IAI47_12680	0.37	+0.7
2,666,528	+		IAI47_12680	0.37	-0.4
2,666,528	+		IAI47_12680	0.37	-0.9
2,666,528	+		IAI47_12680	0.37	-0.5
2,666,528	+		IAI47_12680	0.37	-1.3
2,666,528	+		IAI47_12680	0.37	+2.7
2,666,529	-		IAI47_12680	0.37	+0.3
2,666,529	-		IAI47_12680	0.37	+0.9
2,666,529	-		IAI47_12680	0.37	+2.9
2,666,529	-		IAI47_12680	0.37	-1.3
2,666,529	-		IAI47_12680	0.37	+0.7
2,666,529	-		IAI47_12680	0.37	-1.7
2,666,529	-		IAI47_12680	0.37	-1.0
2,666,529	-		IAI47_12680	0.37	+0.6
2,666,529	-		IAI47_12680	0.37	-0.4
2,666,529	-		IAI47_12680	0.37	-0.4
2,666,529	-		IAI47_12680	0.37	+0.7
2,666,536	+		IAI47_12680	0.38	+1.3
2,666,537	-		IAI47_12680	0.38	+2.9
2,666,537	-		IAI47_12680	0.38	-1.1
2,666,537	-		IAI47_12680	0.38	+1.3
2,666,544	+		IAI47_12680	0.38	-0.8
2,666,599	+		IAI47_12680	0.43	+0.9
2,666,619	+		IAI47_12680	0.44	+1.4
2,666,619	+		IAI47_12680	0.44	-0.9
2,666,619	+		IAI47_12680	0.44	-2.0
2,666,619	+		IAI47_12680	0.44	+3.1
2,666,620	-		IAI47_12680	0.44	+1.0
2,666,620	-		IAI47_12680	0.44	+1.3
2,666,620	-		IAI47_12680	0.44	+0.2
2,666,620	-		IAI47_12680	0.44	-0.9
2,666,620	-		IAI47_12680	0.44	-0.1
2,666,620	-		IAI47_12680	0.44	+0.3
2,666,620	-		IAI47_12680	0.44	-0.1
2,666,620	-		IAI47_12680	0.44	-0.0
2,666,620	-		IAI47_12680	0.44	+0.1
2,666,620	-		IAI47_12680	0.44	+0.7
2,666,620	-		IAI47_12680	0.44	-1.0
2,666,620	-		IAI47_12680	0.44	-2.3
2,666,646	+		IAI47_12680	0.46	+2.3
2,666,647	-		IAI47_12680	0.46	+0.8
2,666,647	-		IAI47_12680	0.46	-0.3
2,666,677	+		IAI47_12680	0.49	+0.7
2,666,677	+		IAI47_12680	0.49	+0.8
2,666,678	-		IAI47_12680	0.49	+0.3
2,666,711	-		IAI47_12680	0.51	-1.7
2,666,780	-		IAI47_12680	0.57	-0.9
2,666,835	-		IAI47_12680	0.61	+0.6
2,666,835	-		IAI47_12680	0.61	+1.3
2,666,835	-		IAI47_12680	0.61	-0.4
2,666,835	-		IAI47_12680	0.61	+0.0
2,666,898	+		IAI47_12680	0.66	-0.3
2,666,899	-		IAI47_12680	0.66	-0.7
2,666,899	-		IAI47_12680	0.66	+0.3
2,666,899	-		IAI47_12680	0.66	+0.6
2,666,899	-		IAI47_12680	0.66	-0.8
2,666,935	-		IAI47_12680	0.69	+0.9
2,666,971	+		IAI47_12680	0.72	-0.7
2,666,971	+		IAI47_12680	0.72	-0.3
2,666,971	+		IAI47_12680	0.72	-1.5
2,666,971	+		IAI47_12680	0.72	+0.8
2,666,971	+		IAI47_12680	0.72	-1.3
2,666,971	+		IAI47_12680	0.72	-0.2
2,666,971	+		IAI47_12680	0.72	+0.7
2,666,971	+		IAI47_12680	0.72	+1.6
2,666,972	-		IAI47_12680	0.72	+0.9
2,666,972	-		IAI47_12680	0.72	-0.1
2,666,972	-		IAI47_12680	0.72	-0.6
2,666,972	-		IAI47_12680	0.72	-0.2
2,666,972	-		IAI47_12680	0.72	-1.9
2,666,972	-		IAI47_12680	0.72	+1.3
2,666,973	+		IAI47_12680	0.72	+0.6
2,666,973	+		IAI47_12680	0.72	+0.0
2,666,973	+		IAI47_12680	0.72	-0.3
2,666,973	+		IAI47_12680	0.72	+1.0
2,666,974	-		IAI47_12680	0.72	+0.6
2,666,974	-		IAI47_12680	0.72	-1.0
2,666,974	-		IAI47_12680	0.72	+0.8
2,667,041	+		IAI47_12680	0.77	+0.3
2,667,041	+		IAI47_12680	0.77	-0.7
2,667,082	-		IAI47_12680	0.81	-1.0
2,667,147	+		IAI47_12680	0.86	+3.4
2,667,147	+		IAI47_12680	0.86	-0.4
2,667,148	-		IAI47_12680	0.86	-0.7
2,667,167	+		IAI47_12680	0.87	-1.2
2,667,268	-				-0.4
2,667,268	-				-0.0
2,667,274	+				+1.0
2,667,274	+				+2.0
2,667,275	-				-0.8
2,667,275	-				-0.3
2,667,275	-				-0.1
2,667,275	-				-0.3
2,667,296	-				-1.1
2,667,296	-				-1.5
2,667,343	+				+3.1
2,667,344	-				+0.2
2,667,344	-				-1.9
2,667,344	-				+0.7
2,667,559	+		IAI47_12685	0.11	-0.8
2,667,559	+		IAI47_12685	0.11	-0.1
2,667,560	-		IAI47_12685	0.11	+1.9
2,667,569	+		IAI47_12685	0.12	+0.8
2,667,569	+		IAI47_12685	0.12	+0.9
2,667,573	+		IAI47_12685	0.12	-2.0
2,667,573	+		IAI47_12685	0.12	-0.5
2,667,574	-		IAI47_12685	0.12	+0.8
2,667,578	+		IAI47_12685	0.12	+2.6
2,667,611	+		IAI47_12685	0.14	-1.0
2,667,661	+		IAI47_12685	0.17	+1.0
2,667,662	-		IAI47_12685	0.17	-0.2
2,667,752	+		IAI47_12685	0.21	-1.5
2,667,753	-		IAI47_12685	0.21	-1.0
2,667,753	-		IAI47_12685	0.21	-2.3
2,667,786	+		IAI47_12685	0.23	-0.0
2,667,786	+		IAI47_12685	0.23	-0.7
2,667,786	+		IAI47_12685	0.23	-0.5
2,667,813	-		IAI47_12685	0.25	+0.3
2,667,920	+		IAI47_12685	0.30	-0.3
2,667,920	+		IAI47_12685	0.30	+1.1
2,667,921	-		IAI47_12685	0.30	-0.4
2,667,991	+		IAI47_12685	0.34	+0.2
2,667,991	+		IAI47_12685	0.34	+2.0
2,667,991	+		IAI47_12685	0.34	+2.3
2,667,991	+		IAI47_12685	0.34	+0.0
2,668,102	+		IAI47_12685	0.40	+1.6
2,668,103	-		IAI47_12685	0.40	-2.4
2,668,152	+		IAI47_12685	0.42	+0.6
2,668,176	+		IAI47_12685	0.44	-0.4
2,668,176	+		IAI47_12685	0.44	+1.3
2,668,176	+		IAI47_12685	0.44	+1.3
2,668,176	+		IAI47_12685	0.44	+1.3
2,668,177	-		IAI47_12685	0.44	-1.3
2,668,177	-		IAI47_12685	0.44	-0.5
2,668,177	-		IAI47_12685	0.44	-0.3
2,668,177	-		IAI47_12685	0.44	-1.3
2,668,279	+		IAI47_12685	0.49	-0.0
2,668,280	-		IAI47_12685	0.49	-0.3
2,668,418	+		IAI47_12685	0.56	+3.1
2,668,419	-		IAI47_12685	0.56	+2.3
2,668,419	-		IAI47_12685	0.56	-1.5
2,668,419	-		IAI47_12685	0.56	-0.4
2,668,424	+		IAI47_12685	0.56	-1.8
2,668,425	-		IAI47_12685	0.56	+0.9
2,668,425	-		IAI47_12685	0.56	-1.0
2,668,538	-		IAI47_12685	0.62	-1.5
2,668,538	-		IAI47_12685	0.62	-0.7
2,668,546	+		IAI47_12685	0.63	-0.7
2,668,547	-		IAI47_12685	0.63	+0.7
2,668,547	-		IAI47_12685	0.63	+0.0
2,668,547	-		IAI47_12685	0.63	+0.0
2,668,547	-		IAI47_12685	0.63	-0.3
2,668,592	+		IAI47_12685	0.65	-0.0
2,668,592	+		IAI47_12685	0.65	-0.3
2,668,592	+		IAI47_12685	0.65	-1.2
2,668,592	+		IAI47_12685	0.65	+1.0
2,668,592	+		IAI47_12685	0.65	-0.4
2,668,593	-		IAI47_12685	0.65	-0.8
2,668,593	-		IAI47_12685	0.65	+1.2
2,668,593	-		IAI47_12685	0.65	-0.3
2,668,593	-		IAI47_12685	0.65	-0.1
2,668,593	-		IAI47_12685	0.65	-0.7
2,668,613	+		IAI47_12685	0.66	-1.6
2,668,634	+		IAI47_12685	0.67	-3.3
2,668,634	+		IAI47_12685	0.67	-1.7
2,668,634	+		IAI47_12685	0.67	+0.5
2,668,635	-		IAI47_12685	0.67	-0.5
2,668,635	-		IAI47_12685	0.67	-0.2
2,668,769	+		IAI47_12685	0.74	+1.7
2,668,770	-		IAI47_12685	0.74	-0.5
2,668,883	+		IAI47_12685	0.80	-0.3
2,668,884	-		IAI47_12685	0.80	-0.7
2,668,884	-		IAI47_12685	0.80	+0.3
2,668,957	+		IAI47_12685	0.84	-1.1
2,668,957	+		IAI47_12685	0.84	-0.4
2,668,957	+		IAI47_12685	0.84	-2.5
2,668,958	-		IAI47_12685	0.84	-1.0
2,669,008	+		IAI47_12685	0.87	-0.1
2,669,009	-		IAI47_12685	0.87	-1.3
2,669,027	+		IAI47_12685	0.88	-1.5
2,669,074	+				+1.0
2,669,074	+				-0.3
2,669,075	-				+1.4
2,669,078	+				+0.3
2,669,078	+				+1.1
2,669,078	+				+0.9
2,669,079	-				-1.5
2,669,079	-				-0.5
2,669,079	-				-0.4
2,669,135	+				-1.8
2,669,136	-				-2.0
2,669,136	-				+2.2
2,669,136	-				-0.4
2,669,136	-				+0.3
2,669,148	-				-0.4
2,669,202	+				+2.0
2,669,203	-				-2.5
2,669,230	+				+0.8
2,669,230	+				+0.4
2,669,230	+				-3.7
2,669,230	+				-0.3
2,669,230	+				+1.3
2,669,231	-				+0.3
2,669,231	-				-0.7
2,669,231	-				-1.0
2,669,231	-				-0.5
2,669,250	+				+0.3
2,669,251	-				-0.8
2,669,260	+				-0.4
2,669,260	+				-1.9
2,669,260	+				-0.2
2,669,260	+				-0.1
2,669,260	+				+2.1
2,669,260	+				-0.3
2,669,260	+				-0.2
2,669,260	+				-0.4
2,669,260	+				-0.9
2,669,260	+				-0.0
2,669,260	+				-2.1
2,669,260	+				-0.1
2,669,261	-				+0.2
2,669,261	-				+0.1
2,669,261	-				-0.4
2,669,261	-				-0.3
2,669,261	-				-0.6
2,669,261	-				+1.7
2,669,261	-				-2.0
2,669,261	-				+0.4
2,669,261	-				+0.6
2,669,261	-				-0.5
2,669,261	-				-1.9
2,669,261	-				-0.6
2,669,261	-				+1.6
2,669,261	-				-0.5
2,669,261	-				-0.5
2,669,261	-				-0.5
2,669,261	-				-1.2
2,669,261	-				-0.0
2,669,261	-				-1.3
2,669,266	+				-0.9
2,669,267	-				-0.3
2,669,274	-				-0.3
2,669,348	+				-1.3
2,669,349	-				-0.3
2,669,351	+				-0.3
2,669,351	+				-0.4
2,669,351	+				-0.1
2,669,351	+				-1.0
2,669,351	+				-2.3
2,669,352	-				-0.4
2,669,352	-				+0.0
2,669,477	+		IAI47_12690	0.10	-1.3
2,669,477	+		IAI47_12690	0.10	+0.7
2,669,477	+		IAI47_12690	0.10	-0.8
2,669,477	+		IAI47_12690	0.10	-1.5
2,669,477	+		IAI47_12690	0.10	-0.1
2,669,477	+		IAI47_12690	0.10	-0.6
2,669,477	+		IAI47_12690	0.10	-0.7
2,669,478	-		IAI47_12690	0.10	-1.6
2,669,478	-		IAI47_12690	0.10	-0.3
2,669,478	-		IAI47_12690	0.10	+0.3
2,669,478	-		IAI47_12690	0.10	+0.2
2,669,478	-		IAI47_12690	0.10	-0.3
2,669,478	-		IAI47_12690	0.10	+0.7
2,669,478	-		IAI47_12690	0.10	-0.2
2,669,478	-		IAI47_12690	0.10	+0.3
2,669,478	-		IAI47_12690	0.10	-0.9
2,669,478	-		IAI47_12690	0.10	-0.7
2,669,478	-		IAI47_12690	0.10	-1.1
2,669,510	+		IAI47_12690	0.12	+1.0
2,669,510	+		IAI47_12690	0.12	-0.5
2,669,511	-		IAI47_12690	0.12	-1.5
2,669,511	-		IAI47_12690	0.12	-0.7
2,669,543	+		IAI47_12690	0.13	+0.3
2,669,665	+		IAI47_12690	0.19	+0.3
2,669,665	+		IAI47_12690	0.19	-1.5
2,669,665	+		IAI47_12690	0.19	+0.4
2,669,666	-		IAI47_12690	0.19	-1.0
2,669,666	-		IAI47_12690	0.19	-2.0
2,669,666	-		IAI47_12690	0.19	+1.2
2,669,666	-		IAI47_12690	0.19	-0.4
2,669,666	-		IAI47_12690	0.19	-0.9
2,669,678	+		IAI47_12690	0.20	-1.3
2,669,679	-		IAI47_12690	0.20	+1.4
2,669,679	-		IAI47_12690	0.20	-1.0
2,669,679	-		IAI47_12690	0.20	-2.4
2,669,740	+		IAI47_12690	0.22	+0.6
2,669,740	+		IAI47_12690	0.22	-0.7
2,669,741	-		IAI47_12690	0.23	+1.0
2,669,741	-		IAI47_12690	0.23	-1.3
2,669,833	+		IAI47_12690	0.27	-1.3
2,669,833	+		IAI47_12690	0.27	+0.7
2,669,833	+		IAI47_12690	0.27	-1.3
2,669,834	-		IAI47_12690	0.27	-0.7
2,669,834	-		IAI47_12690	0.27	+3.0
2,669,864	+		IAI47_12690	0.28	-1.3
2,669,865	-		IAI47_12690	0.28	-0.0
2,669,865	-		IAI47_12690	0.28	-2.9
2,669,873	+		IAI47_12690	0.29	+1.1
2,669,873	+		IAI47_12690	0.29	+0.9
2,669,873	+		IAI47_12690	0.29	-0.8
2,669,873	+		IAI47_12690	0.29	-1.0
2,669,874	-		IAI47_12690	0.29	-1.1
2,669,884	+		IAI47_12690	0.29	-0.4
2,669,884	+		IAI47_12690	0.29	-0.7
2,669,885	-		IAI47_12690	0.29	-1.7
2,669,911	+		IAI47_12690	0.31	-2.5
2,669,948	+		IAI47_12690	0.32	+0.8
2,669,948	+		IAI47_12690	0.32	+1.3
2,669,948	+		IAI47_12690	0.32	-0.3
2,669,949	-		IAI47_12690	0.32	+1.6
2,669,977	-		IAI47_12690	0.34	+0.6
2,670,052	+		IAI47_12690	0.37	+0.7
2,670,052	+		IAI47_12690	0.37	-2.0
2,670,052	+		IAI47_12690	0.37	-0.0
2,670,080	-		IAI47_12690	0.39	+0.3
2,670,100	+		IAI47_12690	0.39	-0.1
2,670,101	-		IAI47_12690	0.40	-0.8
2,670,101	-		IAI47_12690	0.40	+0.3
2,670,101	-		IAI47_12690	0.40	-1.5
2,670,121	+		IAI47_12690	0.40	+0.3
2,670,131	-		IAI47_12690	0.41	-0.7
2,670,199	+		IAI47_12690	0.44	+1.4
2,670,200	-		IAI47_12690	0.44	+1.7