Strain Fitness in Pantoea sp. MT58 around IAI47_10755

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,272,751	+				-0.3
2,272,751	+				-0.1
2,272,777	+				+1.1
2,272,813	-				-0.0
2,272,887	+		IAI47_10750	0.12	-0.7
2,272,888	-		IAI47_10750	0.12	-1.2
2,272,930	+		IAI47_10750	0.16	-0.4
2,272,930	+		IAI47_10750	0.16	-0.1
2,272,931	-		IAI47_10750	0.16	+0.7
2,272,938	+		IAI47_10750	0.17	-0.7
2,272,940	+		IAI47_10750	0.18	-2.3
2,272,941	-		IAI47_10750	0.18	-0.7
2,273,012	+		IAI47_10750	0.26	+1.4
2,273,250	+		IAI47_10750	0.52	-1.5
2,273,250	+		IAI47_10750	0.52	-0.7
2,273,251	-		IAI47_10750	0.52	+2.3
2,273,251	-		IAI47_10750	0.52	-0.1
2,273,251	-		IAI47_10750	0.52	+1.0
2,273,364	+		IAI47_10750	0.65	-1.0
2,273,365	-		IAI47_10750	0.65	-0.5
2,273,384	+		IAI47_10750	0.67	-0.1
2,273,384	+		IAI47_10750	0.67	-2.5
2,273,385	-		IAI47_10750	0.67	-0.0
2,273,385	-		IAI47_10750	0.67	-0.1
2,273,385	-		IAI47_10750	0.67	+1.1
2,273,507	+		IAI47_10750	0.81	-1.3
2,273,508	-		IAI47_10750	0.81	-1.1
2,273,508	-		IAI47_10750	0.81	+0.9
2,273,516	+		IAI47_10750	0.82	+0.3
2,273,517	-		IAI47_10750	0.82	+2.3
2,273,517	-		IAI47_10750	0.82	+2.9
2,273,517	-		IAI47_10750	0.82	+0.3
2,273,517	-		IAI47_10750	0.82	-1.3
2,273,541	+		IAI47_10750	0.85	+1.4
2,273,542	-		IAI47_10750	0.85	-1.3
2,273,542	-		IAI47_10750	0.85	+0.3
2,273,542	-		IAI47_10750	0.85	-0.8
2,273,542	-		IAI47_10750	0.85	+1.3
2,273,568	+		IAI47_10750	0.88	-0.7
2,273,618	+				+2.1
2,273,674	+				-1.2
2,273,674	+				-0.2
2,273,674	+				-0.3
2,273,674	+				+0.3
2,273,674	+				-0.7
2,273,675	-				+1.5
2,273,707	+				-1.3
2,273,707	+				-0.7
2,273,708	-				+0.0
2,273,708	-				-0.5
2,273,711	+				+1.9
2,273,711	+				+0.3
2,273,711	+				-1.0
2,273,712	-				+1.5
2,273,712	-				-1.7
2,273,712	-				+0.9
2,273,712	-				+0.7
2,273,726	+				-0.2
2,273,726	+				+0.9
2,273,727	-				+0.5
2,273,728	+				+0.5
2,273,728	+				+0.3
2,273,754	+				-1.0
2,273,754	+				-1.0
2,273,754	+				-0.3
2,273,754	+				+0.9
2,273,755	-				+0.3
2,273,755	-				-0.4
2,273,755	-				-0.4
2,273,862	-		IAI47_10755	0.47	-1.8
2,273,898	+		IAI47_10755	0.62	+2.1
2,274,005	+				-1.4
2,274,006	-				+1.3
2,274,010	-				-0.6
2,274,010	-				+0.7
2,274,040	-				+0.3
2,274,080	+				-1.5
2,274,081	-				+0.7
2,274,155	+				-0.0
2,274,156	-				+0.3
2,274,156	-				-2.0
2,274,176	+				+0.2
2,274,176	+				+0.7
2,274,176	+				+0.3
2,274,177	-				+0.6
2,274,177	-				-1.0
2,274,191	+				-1.1
2,274,191	+				+1.1
2,274,192	-				-1.5
2,274,192	-				+0.9
2,274,192	-				+1.3
2,274,309	+		IAI47_10760	0.23	+0.4
2,274,309	+		IAI47_10760	0.23	+2.7
2,274,309	+		IAI47_10760	0.23	+1.7
2,274,309	+		IAI47_10760	0.23	+0.2
2,274,309	+		IAI47_10760	0.23	-0.4
2,274,310	-		IAI47_10760	0.23	+1.0
2,274,310	-		IAI47_10760	0.23	+0.3
2,274,310	-		IAI47_10760	0.23	+1.1
2,274,310	-		IAI47_10760	0.23	+1.0
2,274,310	-		IAI47_10760	0.23	+0.1
2,274,310	-		IAI47_10760	0.23	-0.6
2,274,312	+		IAI47_10760	0.24	-0.5
2,274,312	+		IAI47_10760	0.24	-1.5
2,274,313	-		IAI47_10760	0.24	+0.3
2,274,315	+		IAI47_10760	0.24	-2.6
2,274,315	+		IAI47_10760	0.24	-0.2
2,274,316	-		IAI47_10760	0.24	+0.9
2,274,326	+		IAI47_10760	0.26	-0.8
2,274,360	+		IAI47_10760	0.32	-0.3
2,274,360	+		IAI47_10760	0.32	+0.3
2,274,361	-		IAI47_10760	0.32	+0.9
2,274,361	-		IAI47_10760	0.32	-1.1
2,274,482	+		IAI47_10760	0.52	-1.4
2,274,482	+		IAI47_10760	0.52	+0.5
2,274,482	+		IAI47_10760	0.52	+1.4
2,274,483	-		IAI47_10760	0.52	+0.9
2,274,483	-		IAI47_10760	0.52	+0.4
2,274,483	-		IAI47_10760	0.52	-0.7
2,274,501	-		IAI47_10760	0.55	+2.3
2,274,517	+		IAI47_10760	0.58	-0.1
2,274,517	+		IAI47_10760	0.58	-1.3
2,274,517	+		IAI47_10760	0.58	-0.4
2,274,517	+		IAI47_10760	0.58	+0.4
2,274,518	-		IAI47_10760	0.58	+1.1
2,274,658	+		IAI47_10760	0.82	-0.9
2,274,658	+		IAI47_10760	0.82	+0.9
2,274,659	-		IAI47_10760	0.82	+0.3
2,274,659	-		IAI47_10760	0.82	+0.3
2,274,755	+				+1.5
2,274,755	+				-1.0
2,274,755	+				+0.3
2,274,755	+				-0.7
2,274,755	+				+1.3
2,274,755	+				-1.7
2,274,756	-				+1.0
2,274,756	-				-0.4
2,274,756	-				+0.9
2,274,788	-				-1.1
2,274,814	+				-0.2
2,274,814	+				-1.5
2,274,814	+				-0.1
2,274,814	+				-0.4
2,274,814	+				+0.7
2,274,814	+				+1.6
2,274,815	-				+0.6
2,274,815	-				+0.5
2,274,815	-				+0.3
2,274,815	-				-1.3
2,274,815	-				-0.3
2,274,815	-				+1.0
2,274,817	+				+1.3
2,274,817	+				+0.3
2,274,818	-				+0.3
2,274,818	-				-2.2
2,274,818	-				-3.2
2,274,818	-				+0.3
2,274,818	-				+1.9
2,274,818	-				+1.4
2,274,826	+				-1.0
2,274,838	+				+0.8
2,274,838	+				+0.3
2,274,862	+				-0.2
2,274,863	-				-0.4
2,274,879	+				+0.8
2,274,880	-				+0.3
2,274,880	-				+1.0
2,274,880	-				-0.8
2,274,951	-		IAI47_10765	0.12	-1.3
2,274,954	-		IAI47_10765	0.12	-0.7