Strain Fitness in Pantoea sp. MT58 around IAI47_07970

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,685,618	+		IAI47_07965	0.41	+0.2
1,685,636	-		IAI47_07965	0.44	-1.6
1,685,687	+		IAI47_07965	0.52	-1.8
1,685,687	+		IAI47_07965	0.52	-1.6
1,685,699	+		IAI47_07965	0.54	-1.4
1,685,707	+		IAI47_07965	0.55	-1.3
1,685,750	+		IAI47_07965	0.62	-1.3
1,685,936	+				-1.1
1,685,937	-				+1.2
1,685,937	-				-1.8
1,685,939	-				-2.7
1,685,962	+				+1.2
1,685,978	+				-0.5
1,685,982	-				-3.1
1,685,984	+				+0.7
1,685,984	+				-0.5
1,685,994	-				+0.2
1,685,996	+				-0.1
1,686,040	+				-0.2
1,686,041	-				-2.3
1,686,068	+				-0.9
1,686,069	-				-0.8
1,686,069	-				-0.6
1,686,069	-				-2.1
1,686,073	-				-1.0
1,686,079	+				-1.5
1,686,080	-				-0.1
1,686,117	+				-0.7
1,686,222	-				-1.6
1,686,222	-				-1.7
1,686,243	+				-0.5
1,686,244	-				-1.9
1,686,244	-				-0.3
1,686,244	-				-0.2
1,686,277	-				-2.2
1,686,391	-				-0.3
1,686,395	-				-1.1
1,686,395	-				-0.4
1,686,479	-				-0.0
1,686,512	-				-0.2
1,686,512	-				-1.5
1,686,580	+				-1.8
1,686,580	+				-0.3
1,686,580	+				+0.2
1,686,580	+				-1.0
1,686,580	+				+1.2
1,686,580	+				+0.4
1,686,580	+				+1.3
1,686,580	+				-0.2
1,686,580	+				+0.1
1,686,581	-				+0.1
1,686,581	-				-0.3
1,686,581	-				-1.8
1,686,581	-				+0.0
1,686,581	-				+1.2
1,686,581	-				-0.2
1,686,581	-				-1.6
1,686,581	-				-0.3
1,686,581	-				-1.0
1,686,581	-				-0.8
1,686,600	+				-0.1
1,686,600	+				-0.3
1,686,600	+				+0.2
1,686,601	-				-0.9
1,686,604	+				-0.5
1,686,605	-				-0.4
1,686,612	+				-0.0
1,686,613	-				-0.1
1,686,630	+				+0.2
1,686,654	+				+2.1
1,686,723	+		IAI47_07970	0.13	+2.4
1,686,738	+		IAI47_07970	0.15	+3.2
1,686,738	+		IAI47_07970	0.15	+0.8
1,686,739	-		IAI47_07970	0.15	+0.7
1,686,739	-		IAI47_07970	0.15	+1.6
1,686,739	-		IAI47_07970	0.15	+1.2
1,686,743	+		IAI47_07970	0.16	+2.6
1,686,743	+		IAI47_07970	0.16	+1.2
1,686,743	+		IAI47_07970	0.16	+0.4
1,686,743	+		IAI47_07970	0.16	+3.1
1,686,743	+		IAI47_07970	0.16	+3.7
1,686,743	+		IAI47_07970	0.16	+0.2
1,686,744	-		IAI47_07970	0.16	+0.8
1,686,744	-		IAI47_07970	0.16	+2.1
1,686,744	-		IAI47_07970	0.16	+0.7
1,686,744	-		IAI47_07970	0.16	+0.9
1,686,744	-		IAI47_07970	0.16	+0.7
1,686,744	-		IAI47_07970	0.16	+0.2
1,686,746	+		IAI47_07970	0.16	+2.4
1,686,746	+		IAI47_07970	0.16	+2.8
1,686,747	-		IAI47_07970	0.16	+0.7
1,686,747	-		IAI47_07970	0.16	+1.5
1,686,771	+		IAI47_07970	0.19	+1.1
1,686,771	+		IAI47_07970	0.19	+1.5
1,686,771	+		IAI47_07970	0.19	+1.2
1,686,772	-		IAI47_07970	0.20	+0.2
1,686,772	-		IAI47_07970	0.20	+1.1
1,686,772	-		IAI47_07970	0.20	+0.4
1,686,772	-		IAI47_07970	0.20	-0.3
1,686,792	+		IAI47_07970	0.22	+2.4
1,686,805	-		IAI47_07970	0.24	+0.4
1,686,813	+		IAI47_07970	0.25	+0.7
1,686,814	-		IAI47_07970	0.25	+1.2
1,686,814	-		IAI47_07970	0.25	+1.3
1,686,823	-		IAI47_07970	0.26	+0.7
1,686,846	+		IAI47_07970	0.29	+3.1
1,686,870	+		IAI47_07970	0.32	+2.2
1,686,912	+		IAI47_07970	0.37	+2.2
1,686,913	-		IAI47_07970	0.38	+2.2
1,686,913	-		IAI47_07970	0.38	-0.2
1,686,951	+		IAI47_07970	0.42	+0.8
1,686,952	-		IAI47_07970	0.42	+1.7
1,687,160	+		IAI47_07970	0.69	+3.9
1,687,161	-		IAI47_07970	0.69	+0.4
1,687,161	-		IAI47_07970	0.69	+1.9
1,687,161	-		IAI47_07970	0.69	+0.9
1,687,220	+		IAI47_07970	0.77	+0.2
1,687,220	+		IAI47_07970	0.77	+1.4
1,687,292	+		IAI47_07970	0.86	+3.6
1,687,292	+		IAI47_07970	0.86	+1.2
1,687,326	+				+1.9
1,687,326	+				+4.2
1,687,327	-				+0.7
1,687,397	+				+2.6
1,687,397	+				+1.2
1,687,397	+				+0.8
1,687,397	+				+1.4
1,687,397	+				+2.8
1,687,397	+				+1.5
1,687,397	+				+1.7
1,687,397	+				+2.0
1,687,398	-				+1.8
1,687,398	-				+0.6
1,687,398	-				+1.2
1,687,398	-				+1.2
1,687,416	+				+1.8
1,687,416	+				+0.7
1,687,416	+				+1.9
1,687,416	+				+2.0
1,687,416	+				+1.4
1,687,416	+				+1.1
1,687,416	+				+2.6
1,687,416	+				+2.6
1,687,416	+				+2.1
1,687,416	+				+1.7
1,687,416	+				+2.8
1,687,416	+				+2.3
1,687,417	-				+0.2
1,687,417	-				+0.0
1,687,417	-				+0.3
1,687,417	-				+0.4
1,687,417	-				+2.6
1,687,417	-				+0.1
1,687,417	-				+0.8
1,687,426	+				+1.8
1,687,427	-				+0.6
1,687,429	+				+0.9
1,687,430	-		IAI47_07975	0.10	+1.7
1,687,430	-		IAI47_07975	0.10	+1.1
1,687,430	-		IAI47_07975	0.10	+0.8
1,687,430	-		IAI47_07975	0.10	+1.1
1,687,444	+		IAI47_07975	0.15	+0.2
1,687,444	+		IAI47_07975	0.15	+4.8
1,687,445	-		IAI47_07975	0.16	+0.7
1,687,445	-		IAI47_07975	0.16	+2.6
1,687,446	+		IAI47_07975	0.16	-1.1
1,687,447	-		IAI47_07975	0.16	+0.4
1,687,447	-		IAI47_07975	0.16	-1.7
1,687,447	-		IAI47_07975	0.16	-0.8
1,687,447	-		IAI47_07975	0.16	-1.7
1,687,487	-		IAI47_07975	0.31	+1.1
1,687,514	-		IAI47_07975	0.41	+1.1
1,687,519	+		IAI47_07975	0.43	+2.8
1,687,519	+		IAI47_07975	0.43	+2.6
1,687,520	-		IAI47_07975	0.43	+0.7
1,687,520	-		IAI47_07975	0.43	+1.6
1,687,527	-		IAI47_07975	0.46	+2.8
1,687,527	-		IAI47_07975	0.46	+1.0
1,687,649	+				+3.2
1,687,649	+				+1.0
1,687,649	+				+1.7
1,687,650	-				+1.2
1,687,650	-				+2.4
1,687,650	-				+0.9
1,687,655	+				+2.4
1,687,672	+				+1.8
1,687,672	+				+4.3
1,687,672	+				+2.5
1,687,672	+				+2.1
1,687,672	+				+1.7
1,687,672	+				+0.9
1,687,672	+				+2.0
1,687,672	+				+2.4
1,687,672	+				+2.7
1,687,672	+				+1.5
1,687,672	+				+5.2
1,687,672	+				+1.8
1,687,672	+				+2.8
1,687,673	-				+1.9
1,687,673	-				+1.2
1,687,673	-				+0.3
1,687,673	-				-0.0
1,687,673	-				+1.2
1,687,673	-				+1.0
1,687,673	-				+0.4
1,687,673	-				+2.8
1,687,673	-				+0.9
1,687,673	-				+2.1
1,687,673	-				+1.8
1,687,673	-				+0.5
1,687,673	-				-0.0
1,687,673	-				+1.1
1,687,673	-				+1.0
1,687,673	-				+1.8
1,687,673	-				+0.2
1,687,706	+				+1.6
1,687,706	+				+2.1
1,687,706	+				+0.7
1,687,707	-				-0.2
1,687,707	-				-1.2
1,687,707	-				-1.9
1,687,707	-				-1.2
1,687,707	-				-1.6
1,687,866	+		IAI47_07980	0.23	+1.1
1,687,876	-		IAI47_07980	0.24	+0.7
1,687,876	-		IAI47_07980	0.24	+1.3
1,687,916	+		IAI47_07980	0.30	+1.8
1,687,916	+		IAI47_07980	0.30	+2.2
1,687,916	+		IAI47_07980	0.30	+1.1
1,687,916	+		IAI47_07980	0.30	+3.2
1,687,917	-		IAI47_07980	0.30	+0.6
1,687,917	-		IAI47_07980	0.30	+1.5
1,687,917	-		IAI47_07980	0.30	+0.5
1,687,996	+		IAI47_07980	0.41	+0.1
1,688,025	+		IAI47_07980	0.45	+4.5
1,688,026	-		IAI47_07980	0.45	+1.0
1,688,026	-		IAI47_07980	0.45	+0.4
1,688,026	-		IAI47_07980	0.45	+1.1
1,688,052	+		IAI47_07980	0.48	+1.6
1,688,052	+		IAI47_07980	0.48	-0.1
1,688,053	-		IAI47_07980	0.48	+1.2
1,688,099	+		IAI47_07980	0.55	+1.8
1,688,099	+		IAI47_07980	0.55	+1.5
1,688,100	-		IAI47_07980	0.55	+1.1
1,688,100	-		IAI47_07980	0.55	+1.0
1,688,100	-		IAI47_07980	0.55	+0.0
1,688,137	-		IAI47_07980	0.60	+1.5
1,688,139	+		IAI47_07980	0.60	+1.5
1,688,139	+		IAI47_07980	0.60	+2.4
1,688,139	+		IAI47_07980	0.60	+0.7
1,688,139	+		IAI47_07980	0.60	+2.1
1,688,139	+		IAI47_07980	0.60	+2.0
1,688,140	-		IAI47_07980	0.60	+1.4
1,688,140	-		IAI47_07980	0.60	+0.8
1,688,173	+		IAI47_07980	0.65	-0.3
1,688,173	+		IAI47_07980	0.65	+0.6
1,688,173	+		IAI47_07980	0.65	+1.2
1,688,174	-		IAI47_07980	0.65	+0.8
1,688,174	-		IAI47_07980	0.65	-0.2
1,688,174	-		IAI47_07980	0.65	-0.3
1,688,278	-		IAI47_07980	0.79	+0.7
1,688,395	+				+2.2
1,688,396	-				+0.3
1,688,396	-				+0.8