Strain Fitness in Pantoea sp. MT58 around IAI47_07225

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,528,391	+				+0.4
1,528,391	+				+0.3
1,528,391	+				+0.3
1,528,392	-				-1.3
1,528,392	-				+0.5
1,528,392	-				-0.1
1,528,392	-				+1.0
1,528,474	+				-1.3
1,528,488	+				-0.5
1,528,497	-				+0.9
1,528,532	+				-0.0
1,528,532	+				-0.4
1,528,532	+				+0.6
1,528,533	-				-0.6
1,528,545	+				-0.7
1,528,546	-				-1.3
1,528,546	-				+0.3
1,528,546	-				-0.1
1,528,546	-				-0.7
1,528,626	+				+1.1
1,528,626	+				-1.1
1,528,627	-				+0.7
1,528,627	-				-1.4
1,528,631	-				+1.9
1,528,711	+		IAI47_07220	0.11	-2.6
1,528,751	+		IAI47_07220	0.17	-2.5
1,528,752	-		IAI47_07220	0.17	-0.6
1,528,752	-		IAI47_07220	0.17	-1.3
1,528,752	-		IAI47_07220	0.17	-1.9
1,528,752	-		IAI47_07220	0.17	-1.7
1,528,752	-		IAI47_07220	0.17	-0.5
1,528,805	+		IAI47_07220	0.24	+1.4
1,528,806	-		IAI47_07220	0.24	-0.5
1,528,870	+		IAI47_07220	0.33	+0.5
1,528,870	+		IAI47_07220	0.33	-0.5
1,528,870	+		IAI47_07220	0.33	-0.3
1,528,870	+		IAI47_07220	0.33	-1.5
1,528,871	-		IAI47_07220	0.33	+0.5
1,528,871	-		IAI47_07220	0.33	+1.3
1,528,879	-		IAI47_07220	0.34	+1.6
1,528,890	-		IAI47_07220	0.36	+0.3
1,528,899	-		IAI47_07220	0.37	+0.1
1,528,903	+		IAI47_07220	0.37	+1.0
1,528,903	+		IAI47_07220	0.37	-2.8
1,528,903	+		IAI47_07220	0.37	+0.7
1,528,903	+		IAI47_07220	0.37	-0.3
1,528,903	+		IAI47_07220	0.37	+1.2
1,528,903	+		IAI47_07220	0.37	-0.8
1,528,903	+		IAI47_07220	0.37	+0.2
1,528,903	+		IAI47_07220	0.37	-2.5
1,528,903	+		IAI47_07220	0.37	-2.0
1,528,903	+		IAI47_07220	0.37	-1.1
1,528,903	+		IAI47_07220	0.37	-0.6
1,528,904	-		IAI47_07220	0.38	+0.2
1,528,904	-		IAI47_07220	0.38	+1.6
1,528,904	-		IAI47_07220	0.38	-1.0
1,528,904	-		IAI47_07220	0.38	+0.0
1,528,904	-		IAI47_07220	0.38	+0.2
1,528,907	+		IAI47_07220	0.38	+0.6
1,528,907	+		IAI47_07220	0.38	+0.5
1,528,907	+		IAI47_07220	0.38	-1.5
1,528,907	+		IAI47_07220	0.38	+2.1
1,528,907	+		IAI47_07220	0.38	+0.7
1,528,908	-		IAI47_07220	0.38	-1.4
1,528,908	-		IAI47_07220	0.38	+0.6
1,528,908	-		IAI47_07220	0.38	+0.7
1,528,908	-		IAI47_07220	0.38	-0.7
1,528,908	-		IAI47_07220	0.38	-0.1
1,528,908	-		IAI47_07220	0.38	-0.6
1,528,908	-		IAI47_07220	0.38	+1.1
1,528,927	+		IAI47_07220	0.41	-0.1
1,528,928	-		IAI47_07220	0.41	-0.4
1,528,928	-		IAI47_07220	0.41	-0.2
1,528,969	+		IAI47_07220	0.46	-0.7
1,528,970	-		IAI47_07220	0.47	+0.3
1,529,000	+		IAI47_07220	0.51	+0.3
1,529,039	+		IAI47_07220	0.56	-0.0
1,529,116	+		IAI47_07220	0.67	-0.5
1,529,116	+		IAI47_07220	0.67	+1.4
1,529,116	+		IAI47_07220	0.67	+0.9
1,529,117	-		IAI47_07220	0.67	-2.5
1,529,117	-		IAI47_07220	0.67	-0.2
1,529,117	-		IAI47_07220	0.67	-0.9
1,529,117	-		IAI47_07220	0.67	+1.5
1,529,183	+		IAI47_07220	0.76	-0.3
1,529,183	+		IAI47_07220	0.76	-1.5
1,529,184	-		IAI47_07220	0.76	+0.2
1,529,279	+		IAI47_07220	0.89	+0.3
1,529,279	+		IAI47_07220	0.89	+0.3
1,529,280	-		IAI47_07220	0.89	-1.5
1,529,280	-		IAI47_07220	0.89	+1.7
1,529,353	+				-0.7
1,529,353	+				+1.2
1,529,353	+				-0.5
1,529,353	+				-0.2
1,529,353	+				-0.4
1,529,353	+				-0.0
1,529,353	+				+2.3
1,529,353	+				-0.3
1,529,353	+				+1.3
1,529,353	+				-0.7
1,529,353	+				-1.9
1,529,353	+				+0.3
1,529,353	+				+0.9
1,529,353	+				-1.7
1,529,353	+				+0.3
1,529,354	-				-0.1
1,529,354	-				+0.9
1,529,354	-				+0.9
1,529,354	-				+0.1
1,529,354	-				-0.5
1,529,354	-				-1.1
1,529,354	-				-0.1
1,529,354	-				+0.3
1,529,354	-				+0.0
1,529,360	+				-0.0
1,529,361	-				-0.5
1,529,361	-				-0.4
1,529,361	-				-0.1
1,529,378	+				+1.1
1,529,378	+				-0.4
1,529,379	-				-0.5
1,529,379	-				-0.5
1,529,379	-				-0.7
1,529,450	+				+1.5
1,529,484	+		IAI47_07225	0.12	-1.0
1,529,484	+		IAI47_07225	0.12	-0.7
1,529,484	+		IAI47_07225	0.12	-1.5
1,529,484	+		IAI47_07225	0.12	+1.3
1,529,484	+		IAI47_07225	0.12	+0.7
1,529,484	+		IAI47_07225	0.12	-1.4
1,529,485	-		IAI47_07225	0.12	+0.1
1,529,485	-		IAI47_07225	0.12	+0.9
1,529,485	-		IAI47_07225	0.12	+0.6
1,529,485	-		IAI47_07225	0.12	+0.8
1,529,485	-		IAI47_07225	0.12	-0.1
1,529,490	-		IAI47_07225	0.13	+0.7
1,529,490	-		IAI47_07225	0.13	-1.5
1,529,533	+		IAI47_07225	0.18	-0.7
1,529,534	-		IAI47_07225	0.18	+0.9
1,529,621	+		IAI47_07225	0.29	-0.3
1,529,621	+		IAI47_07225	0.29	+1.9
1,529,621	+		IAI47_07225	0.29	-0.9
1,529,621	+		IAI47_07225	0.29	-0.0
1,529,621	+		IAI47_07225	0.29	+3.3
1,529,621	+		IAI47_07225	0.29	-1.6
1,529,621	+		IAI47_07225	0.29	-0.3
1,529,621	+		IAI47_07225	0.29	-0.3
1,529,621	+		IAI47_07225	0.29	+2.7
1,529,621	+		IAI47_07225	0.29	-0.9
1,529,621	+		IAI47_07225	0.29	+0.3
1,529,622	-		IAI47_07225	0.30	-0.3
1,529,622	-		IAI47_07225	0.30	+0.8
1,529,622	-		IAI47_07225	0.30	-0.4
1,529,637	+		IAI47_07225	0.31	+0.3
1,529,638	-		IAI47_07225	0.32	-0.0
1,529,638	-		IAI47_07225	0.32	-0.9
1,529,699	+		IAI47_07225	0.39	+0.3
1,529,699	+		IAI47_07225	0.39	-1.5
1,529,699	+		IAI47_07225	0.39	+0.3
1,529,700	-		IAI47_07225	0.39	+0.3
1,529,700	-		IAI47_07225	0.39	-0.9
1,529,700	-		IAI47_07225	0.39	-0.1
1,529,741	+		IAI47_07225	0.45	+1.0
1,529,762	-		IAI47_07225	0.47	+1.0
1,529,763	+		IAI47_07225	0.47	-1.2
1,529,763	+		IAI47_07225	0.47	-1.0
1,529,763	+		IAI47_07225	0.47	+0.3
1,529,763	+		IAI47_07225	0.47	+1.3
1,529,764	-		IAI47_07225	0.47	-0.4
1,529,764	-		IAI47_07225	0.47	-0.7
1,529,764	-		IAI47_07225	0.47	+0.8
1,529,829	+		IAI47_07225	0.56	+0.0
1,529,832	+		IAI47_07225	0.56	+0.3
1,529,833	-		IAI47_07225	0.56	+1.0
1,529,833	-		IAI47_07225	0.56	+0.3
1,529,920	+		IAI47_07225	0.67	-2.0
1,529,920	+		IAI47_07225	0.67	+0.3
1,529,921	-		IAI47_07225	0.67	+1.7
1,529,921	-		IAI47_07225	0.67	+0.1
1,529,921	-		IAI47_07225	0.67	+0.5
1,529,935	+		IAI47_07225	0.69	-0.1
1,529,935	+		IAI47_07225	0.69	-1.7
1,529,935	+		IAI47_07225	0.69	+2.1
1,529,935	+		IAI47_07225	0.69	+0.9
1,529,936	-		IAI47_07225	0.69	-0.2
1,529,936	-		IAI47_07225	0.69	+0.8
1,529,936	-		IAI47_07225	0.69	+1.4
1,529,972	-		IAI47_07225	0.74	+2.0
1,530,013	+		IAI47_07225	0.79	+0.5
1,530,014	-		IAI47_07225	0.79	-0.7
1,530,014	-		IAI47_07225	0.79	+0.5
1,530,022	-		IAI47_07225	0.80	-1.3
1,530,022	-		IAI47_07225	0.80	-0.0
1,530,022	-		IAI47_07225	0.80	+0.3
1,530,046	-		IAI47_07225	0.83	-0.0
1,530,046	-		IAI47_07225	0.83	+0.5
1,530,046	-		IAI47_07225	0.83	-0.9
1,530,074	+		IAI47_07225	0.86	+1.6
1,530,074	+		IAI47_07225	0.86	-1.3
1,530,075	-		IAI47_07225	0.87	-0.9
1,530,075	-		IAI47_07225	0.87	+2.4
1,530,075	-		IAI47_07225	0.87	-0.6
1,530,075	-		IAI47_07225	0.87	-0.7
1,530,115	-				+1.7
1,530,115	-				+0.9
1,530,144	+				-0.4
1,530,144	+				-0.5
1,530,144	+				-0.5
1,530,144	+				-0.8
1,530,144	+				+1.0
1,530,144	+				+0.3
1,530,145	-				+2.9
1,530,150	+				+1.0
1,530,150	+				+2.1
1,530,150	+				+0.7
1,530,150	+				-0.7
1,530,150	+				-0.1
1,530,150	+				+0.7
1,530,151	-				+2.6
1,530,151	-				+0.2
1,530,151	-				+2.7
1,530,151	-				+0.1
1,530,183	-				-0.2
1,530,197	+				+1.0
1,530,198	-				-0.2
1,530,311	+		IAI47_07230	0.14	-1.7
1,530,318	+		IAI47_07230	0.15	+0.3
1,530,318	+		IAI47_07230	0.15	+0.3
1,530,318	+		IAI47_07230	0.15	-0.9
1,530,343	-		IAI47_07230	0.17	-0.5
1,530,343	-		IAI47_07230	0.17	+2.4
1,530,343	-		IAI47_07230	0.17	-0.7
1,530,382	-		IAI47_07230	0.21	-0.9
1,530,382	-		IAI47_07230	0.21	+0.6
1,530,427	+		IAI47_07230	0.26	+0.3
1,530,445	-		IAI47_07230	0.28	+0.2
1,530,468	+		IAI47_07230	0.30	+0.3
1,530,468	+		IAI47_07230	0.30	-1.9
1,530,469	-		IAI47_07230	0.31	-0.6
1,530,469	-		IAI47_07230	0.31	-1.3
1,530,469	-		IAI47_07230	0.31	-0.7
1,530,469	-		IAI47_07230	0.31	+0.5
1,530,470	+		IAI47_07230	0.31	-0.2
1,530,470	+		IAI47_07230	0.31	+0.6
1,530,470	+		IAI47_07230	0.31	+0.8
1,530,470	+		IAI47_07230	0.31	+0.8
1,530,471	-		IAI47_07230	0.31	+0.7
1,530,471	-		IAI47_07230	0.31	-1.1
1,530,471	-		IAI47_07230	0.31	-0.7
1,530,471	-		IAI47_07230	0.31	-0.7
1,530,471	-		IAI47_07230	0.31	+0.1
1,530,471	-		IAI47_07230	0.31	-0.1
1,530,471	-		IAI47_07230	0.31	-0.7
1,530,511	+		IAI47_07230	0.35	+2.2
1,530,511	+		IAI47_07230	0.35	+1.3
1,530,511	+		IAI47_07230	0.35	-1.3
1,530,511	+		IAI47_07230	0.35	+0.3
1,530,512	-		IAI47_07230	0.35	-0.2
1,530,512	-		IAI47_07230	0.35	-1.0
1,530,512	-		IAI47_07230	0.35	-1.1
1,530,512	-		IAI47_07230	0.35	+0.6
1,530,527	+		IAI47_07230	0.37	+0.8
1,530,528	-		IAI47_07230	0.37	-1.3
1,530,530	+		IAI47_07230	0.37	-1.7
1,530,530	+		IAI47_07230	0.37	-1.0
1,530,531	-		IAI47_07230	0.37	+0.3
1,530,531	-		IAI47_07230	0.37	+0.8
1,530,568	-		IAI47_07230	0.41	+1.1
1,530,766	+		IAI47_07230	0.62	+0.5
1,530,766	+		IAI47_07230	0.62	-2.4
1,530,766	+		IAI47_07230	0.62	-0.7
1,530,897	+		IAI47_07230	0.76	-0.3
1,531,032	+				+0.3
1,531,032	+				-2.5
1,531,032	+				-1.7
1,531,033	-				-1.7
1,531,033	-				+0.3
1,531,033	-				-0.7
1,531,079	+				-0.6
1,531,079	+				+1.1
1,531,079	+				+0.1
1,531,080	-				+0.3
1,531,081	-				+0.3
1,531,094	+				+0.8
1,531,094	+				-1.2
1,531,094	+				+0.6
1,531,095	-				-0.7
1,531,117	+				+0.8
1,531,117	+				-0.5
1,531,117	+				+2.8
1,531,152	+				-0.0
1,531,152	+				-1.6
1,531,160	+				+2.6
1,531,160	+				+0.3
1,531,160	+				-1.0
1,531,161	-				+0.3
1,531,161	-				-1.7
1,531,161	-				-1.3
1,531,161	-				-0.6
1,531,166	+				-0.1
1,531,166	+				-1.3
1,531,166	+				+1.5
1,531,166	+				-0.3
1,531,167	-				+1.1
1,531,167	-				-0.5
1,531,167	-				-1.0
1,531,167	-				+0.4