Strain Fitness in Pantoea sp. MT58 around IAI47_06965

Experiment: Ying_all64 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_06960 and IAI47_06965 are separated by 70 nucleotidesIAI47_06965 and IAI47_06970 are separated by 46 nucleotides IAI47_06960: IAI47_06960 - glycosyltransferase family 2 protein, at 1,465,556 to 1,466,473 _06960 IAI47_06965: IAI47_06965 - glycosyltransferase family 2 protein, at 1,466,544 to 1,467,296 _06965 IAI47_06970: IAI47_06970 - glycosyltransferase, at 1,467,343 to 1,468,377 _06970 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -2 -1 0 1 2at 1466.522 kb on + strandat 1466.576 kb on + strandat 1466.576 kb on + strandat 1466.577 kb on - strandat 1466.586 kb on + strandat 1466.587 kb on - strandat 1466.672 kb on + strand, within IAI47_06965at 1466.863 kb on + strand, within IAI47_06965at 1466.910 kb on + strand, within IAI47_06965at 1467.240 kb on + strandat 1467.255 kb on + strandat 1467.255 kb on + strandat 1467.284 kb on + strandat 1467.318 kb on + strandat 1467.321 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
remove
1,466,522 + -1.0
1,466,576 + -0.4
1,466,576 + -2.5
1,466,577 - +0.3
1,466,586 + -0.3
1,466,587 - +0.3
1,466,672 + IAI47_06965 0.17 -1.7
1,466,863 + IAI47_06965 0.42 -0.7
1,466,910 + IAI47_06965 0.49 -1.7
1,467,240 + +1.9
1,467,255 + -0.4
1,467,255 + -0.3
1,467,284 + +1.0
1,467,318 + -0.7
1,467,321 + -0.4

Or see this region's nucleotide sequence