Strain Fitness in Pantoea sp. MT58 around IAI47_06350

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,289,111	+		IAI47_06340	0.55	-0.7
1,289,133	+		IAI47_06340	0.58	+2.2
1,289,158	-		IAI47_06340	0.62	-2.0
1,289,158	-		IAI47_06340	0.62	+2.2
1,289,176	+		IAI47_06340	0.65	+1.3
1,289,177	-		IAI47_06340	0.65	+0.5
1,289,222	+		IAI47_06340	0.72	-2.0
1,289,223	-		IAI47_06340	0.72	-1.2
1,289,286	+		IAI47_06340	0.82	+2.7
1,289,286	+		IAI47_06340	0.82	-3.0
1,289,286	+		IAI47_06340	0.82	-0.4
1,289,287	-		IAI47_06340	0.82	-0.0
1,289,287	-		IAI47_06340	0.82	+0.5
1,289,287	-		IAI47_06340	0.82	+0.9
1,289,287	-		IAI47_06340	0.82	+0.9
1,289,287	-		IAI47_06340	0.82	+1.7
1,289,289	+		IAI47_06340	0.82	+0.1
1,289,289	+		IAI47_06340	0.82	+0.7
1,289,289	+		IAI47_06340	0.82	-0.7
1,289,289	+		IAI47_06340	0.82	+0.8
1,289,290	-		IAI47_06340	0.82	-0.5
1,289,290	-		IAI47_06340	0.82	+1.3
1,289,290	-		IAI47_06340	0.82	+0.3
1,289,290	-		IAI47_06340	0.82	+1.7
1,289,332	-		IAI47_06340	0.89	-1.8
1,289,358	-				+0.3
1,289,358	-				+0.2
1,289,385	+				-0.8
1,289,385	+				+0.8
1,289,385	+				-1.0
1,289,391	+				-2.2
1,289,391	+				-0.4
1,289,391	+				-0.0
1,289,391	+				-1.0
1,289,404	+				+0.3
1,289,404	+				+0.5
1,289,404	+				+0.2
1,289,405	-				+0.3
1,289,437	+				+0.5
1,289,438	-				-0.4
1,289,438	-				+1.2
1,289,438	-				-1.5
1,289,447	+				-1.0
1,289,447	+				-0.7
1,289,448	-				+1.6
1,289,448	-				+0.3
1,289,448	-				+2.6
1,289,448	-				-0.7
1,289,506	+		IAI47_06345	0.12	+1.8
1,289,507	-		IAI47_06345	0.12	+1.2
1,289,507	-		IAI47_06345	0.12	+1.3
1,289,576	+		IAI47_06345	0.23	+0.3
1,289,606	+		IAI47_06345	0.28	-0.0
1,289,606	+		IAI47_06345	0.28	-0.5
1,289,606	+		IAI47_06345	0.28	-0.7
1,289,606	+		IAI47_06345	0.28	+0.1
1,289,606	+		IAI47_06345	0.28	-1.4
1,289,606	+		IAI47_06345	0.28	-0.8
1,289,606	+		IAI47_06345	0.28	+0.9
1,289,606	+		IAI47_06345	0.28	-1.5
1,289,606	+		IAI47_06345	0.28	+0.3
1,289,606	+		IAI47_06345	0.28	-0.3
1,289,607	-				+1.6
1,289,607	-		IAI47_06345	0.28	-0.2
1,289,607	-		IAI47_06345	0.28	-0.2
1,289,607	-		IAI47_06345	0.28	+1.9
1,289,607	-		IAI47_06345	0.28	+0.8
1,289,607	-		IAI47_06345	0.28	-1.6
1,289,611	+		IAI47_06345	0.29	+0.3
1,289,611	+		IAI47_06345	0.29	-0.7
1,289,611	+		IAI47_06345	0.29	-1.2
1,289,611	+		IAI47_06345	0.29	+1.6
1,289,612	-		IAI47_06345	0.29	-0.7
1,289,612	-		IAI47_06345	0.29	-0.7
1,289,612	-		IAI47_06345	0.29	-2.0
1,289,612	-		IAI47_06345	0.29	-0.3
1,289,612	-		IAI47_06345	0.29	+1.0
1,289,660	+		IAI47_06345	0.37	-0.2
1,289,660	+		IAI47_06345	0.37	-0.7
1,289,660	+		IAI47_06345	0.37	+2.2
1,289,661	-		IAI47_06345	0.38	-0.2
1,289,674	+		IAI47_06345	0.40	-0.7
1,289,689	+		IAI47_06345	0.42	+1.6
1,289,758	+		IAI47_06345	0.54	-0.7
1,289,758	+		IAI47_06345	0.54	+0.9
1,289,758	+		IAI47_06345	0.54	+0.2
1,289,758	+		IAI47_06345	0.54	-2.5
1,289,759	-		IAI47_06345	0.54	-0.1
1,289,759	-		IAI47_06345	0.54	-0.3
1,289,759	-		IAI47_06345	0.54	-0.4
1,289,759	-		IAI47_06345	0.54	+0.1
1,289,759	-		IAI47_06345	0.54	-0.5
1,289,782	+		IAI47_06345	0.58	-1.1
1,289,782	+		IAI47_06345	0.58	-0.4
1,289,783	-		IAI47_06345	0.58	-1.1
1,289,783	-		IAI47_06345	0.58	+0.3
1,289,783	-		IAI47_06345	0.58	+0.1
1,289,783	-		IAI47_06345	0.58	-0.7
1,289,783	-		IAI47_06345	0.58	+0.8
1,289,783	-		IAI47_06345	0.58	+1.9
1,289,783	-		IAI47_06345	0.58	-1.0
1,289,783	-		IAI47_06345	0.58	+0.9
1,289,785	+		IAI47_06345	0.58	-1.2
1,289,785	+		IAI47_06345	0.58	-0.3
1,289,785	+		IAI47_06345	0.58	+0.6
1,289,786	-		IAI47_06345	0.58	+1.3
1,289,786	-		IAI47_06345	0.58	-1.2
1,289,786	-		IAI47_06345	0.58	+0.1
1,289,786	-		IAI47_06345	0.58	+0.5
1,289,786	-		IAI47_06345	0.58	-0.5
1,289,786	-		IAI47_06345	0.58	-0.2
1,289,802	+		IAI47_06345	0.61	+1.6
1,289,803	-		IAI47_06345	0.61	+1.1
1,289,836	+		IAI47_06345	0.67	+0.0
1,289,836	+		IAI47_06345	0.67	+0.9
1,289,836	+		IAI47_06345	0.67	+0.1
1,289,855	+		IAI47_06345	0.70	+0.3
1,289,855	+		IAI47_06345	0.70	-2.0
1,289,855	+		IAI47_06345	0.70	+1.8
1,289,855	+		IAI47_06345	0.70	+2.0
1,289,856	-		IAI47_06345	0.70	+0.7
1,289,856	-		IAI47_06345	0.70	-0.2
1,289,856	-		IAI47_06345	0.70	-0.2
1,289,856	-		IAI47_06345	0.70	+1.3
1,289,856	-		IAI47_06345	0.70	+0.9
1,289,856	-		IAI47_06345	0.70	+0.3
1,289,856	-		IAI47_06345	0.70	+0.9
1,289,868	-		IAI47_06345	0.72	+0.8
1,289,921	+		IAI47_06345	0.81	+0.2
1,289,921	+		IAI47_06345	0.81	+0.2
1,289,922	-		IAI47_06345	0.81	-0.7
1,289,922	-		IAI47_06345	0.81	+1.3
1,289,922	-		IAI47_06345	0.81	-1.0
1,289,987	+				+0.1
1,289,987	+				-1.2
1,289,988	-				+1.2
1,289,996	+				+0.1
1,289,996	+				-1.7
1,289,996	+				+0.9
1,289,996	+				+0.5
1,289,997	-				-0.0
1,289,997	-				+2.0
1,290,081	+				-0.7
1,290,081	+				+0.8
1,290,081	+				-2.0
1,290,082	-				-2.0
1,290,090	+				+0.1
1,290,090	+				+0.3
1,290,091	-				-1.2
1,290,091	-				-0.4
1,290,091	-				+2.2
1,290,092	+				+0.3
1,290,092	+				+0.4
1,290,092	+				+1.5
1,290,093	-				-1.9
1,290,093	-				-3.6
1,290,115	+				-1.5
1,290,115	+				-1.5
1,290,116	-				+0.3
1,290,140	+				-0.7
1,290,141	-				-2.0
1,290,180	-				-0.4
1,290,250	-		IAI47_06350	0.12	-1.8
1,290,288	-		IAI47_06350	0.15	+0.3
1,290,322	+		IAI47_06350	0.18	-0.1
1,290,322	+		IAI47_06350	0.18	-2.0
1,290,322	+		IAI47_06350	0.18	-0.2
1,290,322	+		IAI47_06350	0.18	-0.7
1,290,322	+		IAI47_06350	0.18	+0.1
1,290,322	+		IAI47_06350	0.18	-0.6
1,290,322	+		IAI47_06350	0.18	-1.8
1,290,322	+		IAI47_06350	0.18	+1.7
1,290,323	-		IAI47_06350	0.18	+1.3
1,290,323	-		IAI47_06350	0.18	-0.7
1,290,323	-		IAI47_06350	0.18	-1.3
1,290,323	-		IAI47_06350	0.18	-1.7
1,290,323	-		IAI47_06350	0.18	-0.4
1,290,362	+		IAI47_06350	0.21	-2.2
1,290,362	+		IAI47_06350	0.21	-0.1
1,290,362	+		IAI47_06350	0.21	+0.3
1,290,362	+		IAI47_06350	0.21	-1.0
1,290,362	+		IAI47_06350	0.21	+0.2
1,290,363	-		IAI47_06350	0.21	-2.0
1,290,363	-		IAI47_06350	0.21	+1.3
1,290,400	+		IAI47_06350	0.24	-3.7
1,290,400	+		IAI47_06350	0.24	+0.8
1,290,423	-		IAI47_06350	0.26	-0.5
1,290,423	-		IAI47_06350	0.26	+0.5
1,290,480	+		IAI47_06350	0.31	+1.5
1,290,527	+		IAI47_06350	0.35	-1.2
1,290,527	+		IAI47_06350	0.35	+1.3
1,290,527	+		IAI47_06350	0.35	-0.7
1,290,527	+		IAI47_06350	0.35	+1.3
1,290,527	+		IAI47_06350	0.35	-0.1
1,290,527	+		IAI47_06350	0.35	-0.7
1,290,527	+		IAI47_06350	0.35	+0.1
1,290,528	-		IAI47_06350	0.35	+0.3
1,290,528	-		IAI47_06350	0.35	-1.5
1,290,528	-		IAI47_06350	0.35	-1.5
1,290,529	+		IAI47_06350	0.35	-1.7
1,290,530	-		IAI47_06350	0.35	-1.0
1,290,530	-		IAI47_06350	0.35	-0.8
1,290,561	+		IAI47_06350	0.37	-0.9
1,290,562	-		IAI47_06350	0.38	+0.3
1,290,562	-		IAI47_06350	0.38	-1.4
1,290,595	+		IAI47_06350	0.40	-1.1
1,290,595	+		IAI47_06350	0.40	-0.7
1,290,676	+		IAI47_06350	0.47	+1.3
1,290,677	-		IAI47_06350	0.47	-0.7
1,290,719	+		IAI47_06350	0.50	-0.5
1,290,719	+		IAI47_06350	0.50	-0.5
1,290,719	+		IAI47_06350	0.50	+0.1
1,290,719	+		IAI47_06350	0.50	+0.6
1,290,719	+		IAI47_06350	0.50	-2.0
1,290,720	-		IAI47_06350	0.50	-2.2
1,290,720	-		IAI47_06350	0.50	+0.2
1,290,720	-		IAI47_06350	0.50	+1.0
1,290,747	+		IAI47_06350	0.53	-1.0
1,290,748	-		IAI47_06350	0.53	-1.2
1,290,748	-		IAI47_06350	0.53	+0.3
1,290,748	-		IAI47_06350	0.53	-0.9
1,290,748	-		IAI47_06350	0.53	-0.7
1,290,761	+		IAI47_06350	0.54	-1.5
1,290,761	+		IAI47_06350	0.54	-0.7
1,290,761	+		IAI47_06350	0.54	-1.2
1,290,761	+		IAI47_06350	0.54	-0.1
1,290,762	-		IAI47_06350	0.54	+0.3
1,290,762	-		IAI47_06350	0.54	-1.7
1,290,762	-		IAI47_06350	0.54	-0.8
1,290,762	-		IAI47_06350	0.54	-2.4
1,290,766	+		IAI47_06350	0.54	+0.0
1,290,766	+		IAI47_06350	0.54	-0.8
1,290,766	+		IAI47_06350	0.54	+0.6
1,290,766	+		IAI47_06350	0.54	-2.4
1,290,767	-		IAI47_06350	0.54	-1.7
1,290,767	-		IAI47_06350	0.54	+1.3
1,290,767	-		IAI47_06350	0.54	-0.7
1,290,779	+		IAI47_06350	0.55	-1.2
1,290,786	-		IAI47_06350	0.56	+0.3
1,290,786	-		IAI47_06350	0.56	-0.4
1,290,815	+		IAI47_06350	0.58	-1.7
1,290,825	+		IAI47_06350	0.59	+0.1
1,290,840	-		IAI47_06350	0.60	+0.1
1,290,840	-		IAI47_06350	0.60	-0.7
1,290,840	-		IAI47_06350	0.60	-0.7
1,290,840	-		IAI47_06350	0.60	+0.3
1,290,883	+		IAI47_06350	0.64	-0.4
1,290,883	+		IAI47_06350	0.64	+0.9
1,290,883	+		IAI47_06350	0.64	-0.4
1,290,883	+		IAI47_06350	0.64	+1.1
1,290,883	+		IAI47_06350	0.64	-0.9
1,290,883	+		IAI47_06350	0.64	+0.2
1,290,884	-		IAI47_06350	0.64	-0.6
1,290,884	-		IAI47_06350	0.64	-0.3
1,290,884	-		IAI47_06350	0.64	-1.2
1,290,884	-		IAI47_06350	0.64	-2.5
1,290,935	-		IAI47_06350	0.68	+0.1
1,291,022	+		IAI47_06350	0.75	-0.1
1,291,023	-		IAI47_06350	0.75	+0.2
1,291,023	-		IAI47_06350	0.75	-1.0
1,291,023	-		IAI47_06350	0.75	-0.1
1,291,024	+		IAI47_06350	0.75	-1.2
1,291,024	+		IAI47_06350	0.75	+1.6
1,291,024	+		IAI47_06350	0.75	+1.7
1,291,024	+		IAI47_06350	0.75	-0.3
1,291,025	-		IAI47_06350	0.76	-0.7
1,291,025	-		IAI47_06350	0.76	+0.1
1,291,025	-		IAI47_06350	0.76	-0.0
1,291,025	-		IAI47_06350	0.76	-2.3
1,291,025	-		IAI47_06350	0.76	-0.3
1,291,025	-		IAI47_06350	0.76	-1.5
1,291,025	-		IAI47_06350	0.76	-1.5
1,291,025	-		IAI47_06350	0.76	-0.7
1,291,028	+		IAI47_06350	0.76	-1.3
1,291,028	+		IAI47_06350	0.76	-1.0
1,291,029	-		IAI47_06350	0.76	+0.1
1,291,029	-		IAI47_06350	0.76	-1.2
1,291,029	-		IAI47_06350	0.76	+0.1
1,291,029	-		IAI47_06350	0.76	+0.9
1,291,029	-		IAI47_06350	0.76	+0.3
1,291,029	-		IAI47_06350	0.76	+0.1
1,291,029	-		IAI47_06350	0.76	-1.7
1,291,029	-		IAI47_06350	0.76	+0.1
1,291,029	-		IAI47_06350	0.76	-0.1
1,291,036	-		IAI47_06350	0.76	-1.2
1,291,066	+		IAI47_06350	0.79	+0.7
1,291,067	-		IAI47_06350	0.79	-1.2
1,291,067	-		IAI47_06350	0.79	-0.5
1,291,086	-		IAI47_06350	0.81	-2.0
1,291,096	+		IAI47_06350	0.81	-1.5
1,291,097	-		IAI47_06350	0.81	+3.0
1,291,097	-		IAI47_06350	0.81	+0.0
1,291,117	+		IAI47_06350	0.83	+0.1
1,291,118	-		IAI47_06350	0.83	-1.5
1,291,139	+		IAI47_06350	0.85	+0.3
1,291,139	+		IAI47_06350	0.85	+1.4
1,291,139	+		IAI47_06350	0.85	+0.9
1,291,220	+				+0.0
1,291,220	+				+0.3
1,291,220	+				-0.7
1,291,221	-				-1.2
1,291,221	-				-1.0
1,291,221	-				+0.9
1,291,221	-				-1.7
1,291,221	-				-0.7
1,291,221	-				-0.5
1,291,221	-				+0.3
1,291,223	+				+0.5
1,291,224	-				-0.1
1,291,224	-				-2.5
1,291,224	-				+0.3
1,291,224	-				-0.3
1,291,224	-				+0.3
1,291,244	+				+0.3
1,291,244	+				-0.4
1,291,276	+				-0.9
1,291,276	+				-1.3
1,291,277	-				-1.2
1,291,277	-				+1.3
1,291,277	-				-0.7
1,291,277	-				-1.6
1,291,277	-				+0.2
1,291,304	+				+0.7
1,291,305	-				-1.2
1,291,305	-				-2.1
1,291,383	+				+0.0
1,291,383	+				-0.5
1,291,383	+				-0.1
1,291,383	+				-0.2
1,291,383	+				-0.5
1,291,383	+				-1.4
1,291,383	+				+2.0
1,291,383	+				+0.8
1,291,383	+				-0.8
1,291,383	+				+0.5
1,291,384	-				-1.5
1,291,384	-				+0.5
1,291,384	-				-0.5
1,291,384	-				-1.0
1,291,384	-				+1.3
1,291,384	-				+0.7
1,291,384	-				+0.3
1,291,384	-				-0.3
1,291,460	+				-0.3
1,291,461	-				-1.0
1,291,461	-				+0.8
1,291,461	-				-0.4
1,291,494	-				-1.7
1,291,494	-				-0.7
1,291,499	+				+1.2
1,291,500	-				-0.3
1,291,500	-				+0.1
1,291,500	-				-0.5
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