Strain Fitness in Pantoea sp. MT58 around IAI47_04870

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,020,134	+		IAI47_04860	0.69	+0.1
1,020,134	+		IAI47_04860	0.69	-0.8
1,020,135	-		IAI47_04860	0.69	+1.9
1,020,135	-		IAI47_04860	0.69	+0.2
1,020,135	-		IAI47_04860	0.69	-1.0
1,020,135	-		IAI47_04860	0.69	+1.1
1,020,135	-		IAI47_04860	0.69	-0.4
1,020,154	+		IAI47_04860	0.71	-0.4
1,020,191	+		IAI47_04860	0.75	-0.2
1,020,191	+		IAI47_04860	0.75	+0.8
1,020,192	-		IAI47_04860	0.75	-0.6
1,020,215	+		IAI47_04860	0.78	+0.6
1,020,215	+		IAI47_04860	0.78	-0.1
1,020,231	+		IAI47_04860	0.79	-0.9
1,020,231	+		IAI47_04860	0.79	-0.2
1,020,232	-		IAI47_04860	0.79	+0.7
1,020,232	-		IAI47_04860	0.79	+0.8
1,020,248	+		IAI47_04860	0.81	-1.8
1,020,248	+		IAI47_04860	0.81	+1.7
1,020,249	-		IAI47_04860	0.81	+0.1
1,020,279	-		IAI47_04860	0.84	+0.6
1,020,317	+		IAI47_04860	0.88	+2.1
1,020,317	+		IAI47_04860	0.88	-2.0
1,020,318	-		IAI47_04860	0.88	-1.0
1,020,341	+				-1.6
1,020,341	+				+0.4
1,020,341	+				+0.6
1,020,342	-				+0.8
1,020,342	-				-0.5
1,020,393	-				-0.2
1,020,404	+				+1.0
1,020,404	+				+1.7
1,020,404	+				-0.2
1,020,405	-				-1.6
1,020,405	-				-0.6
1,020,405	-				+0.6
1,020,405	-				-1.2
1,020,787	+		IAI47_04865	0.78	+0.4
1,020,787	+		IAI47_04865	0.78	-1.2
1,020,788	-		IAI47_04865	0.78	-0.6
1,020,788	-		IAI47_04865	0.78	-0.2
1,020,788	-		IAI47_04865	0.78	+0.1
1,020,888	-				-0.9
1,020,892	+				-0.9
1,020,892	+				-1.4
1,020,892	+				+1.4
1,020,892	+				-1.1
1,020,892	+				-0.6
1,020,892	+				+0.1
1,020,892	+				+1.4
1,020,893	-				+1.6
1,020,893	-				-1.2
1,020,943	+				-0.3
1,020,943	+				-1.4
1,020,943	+				-1.6
1,020,944	-				-0.3
1,020,944	-				+0.2
1,020,944	-				+2.8
1,020,944	-				+0.2
1,020,944	-				+0.8
1,020,944	-				-0.6
1,020,977	-				-0.9
1,020,977	-				-1.0
1,020,996	+				-0.6
1,020,996	+				+1.4
1,020,996	+				+1.2
1,020,996	+				+0.4
1,020,996	+				-0.4
1,020,996	+				-1.2
1,020,996	+				+0.4
1,020,996	+				-2.0
1,020,996	+				+0.5
1,020,996	+				-0.6
1,020,996	+				+0.6
1,020,999	+				+0.5
1,020,999	+				-0.8
1,020,999	+				-0.4
1,020,999	+				-0.9
1,020,999	+				-1.8
1,021,012	+				-1.6
1,021,143	+				-0.4
1,021,161	+				-1.6
1,021,161	+				-0.6
1,021,236	+				-2.2
1,021,236	+				-1.6
1,021,318	+		IAI47_04870	0.12	-1.6
1,021,352	+		IAI47_04870	0.14	-2.4
1,021,363	+		IAI47_04870	0.14	-1.6
1,021,456	+		IAI47_04870	0.19	-2.2
1,021,456	+		IAI47_04870	0.19	-0.6
1,021,458	+		IAI47_04870	0.19	-1.2
1,021,710	+		IAI47_04870	0.33	-0.2
1,021,714	+		IAI47_04870	0.34	-1.2
1,021,714	+		IAI47_04870	0.34	-1.2
1,021,776	+		IAI47_04870	0.37	-2.2
1,021,776	+		IAI47_04870	0.37	-1.4
1,021,776	+		IAI47_04870	0.37	-2.2
1,021,801	+		IAI47_04870	0.39	+1.9
1,021,803	+		IAI47_04870	0.39	-1.2
1,021,803	+		IAI47_04870	0.39	-1.4
1,021,833	+		IAI47_04870	0.40	-1.2
1,021,833	+		IAI47_04870	0.40	-0.6
1,021,848	+		IAI47_04870	0.41	-1.2
1,021,899	+		IAI47_04870	0.44	+0.4
1,021,993	+		IAI47_04870	0.49	-0.6
1,022,026	+		IAI47_04870	0.51	-1.2
1,022,221	+		IAI47_04870	0.62	-0.1
1,022,221	+		IAI47_04870	0.62	-1.2
1,022,271	+		IAI47_04870	0.65	-1.4
1,022,271	+		IAI47_04870	0.65	-2.6
1,022,271	+		IAI47_04870	0.65	+0.0
1,022,271	+		IAI47_04870	0.65	-0.6
1,022,292	+		IAI47_04870	0.66	+0.4
1,022,347	+		IAI47_04870	0.69	-2.0
1,022,373	+		IAI47_04870	0.70	-1.6
1,022,407	+		IAI47_04870	0.72	+1.9
1,022,407	+		IAI47_04870	0.72	-2.2
1,022,434	+		IAI47_04870	0.74	-0.6
1,022,523	+		IAI47_04870	0.79	-1.4
1,022,523	+		IAI47_04870	0.79	+1.4
1,022,561	+		IAI47_04870	0.81	-1.2
1,022,753	+				-1.2
1,022,767	+				-0.4
1,022,829	+				-2.0
1,022,829	+				-1.2
1,022,829	+				+0.4
1,022,829	+				-1.6
1,022,892	+				-0.1
1,022,892	+				-0.3
1,022,905	+				+0.4
1,022,905	+				-0.7
1,023,852	+				-0.5
1,023,906	+				-2.4
1,023,906	+				-1.5
1,023,906	+				+0.9