Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04140 and IAI47_04145 are separated by 94 nucleotides IAI47_04145 and IAI47_04150 are separated by 298 nucleotides IAI47_04150 and IAI47_04155 overlap by 1 nucleotides
IAI47_04140: IAI47_04140 - 7-carboxy-7-deazaguanine synthase QueE, at 870,502 to 871,173
_04140
IAI47_04145: IAI47_04145 - 6-carboxytetrahydropterin synthase QueD, at 871,268 to 871,627
_04145
IAI47_04150: IAI47_04150 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 871,926 to 873,731
_04150
IAI47_04155: IAI47_04155 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 873,731 to 875,452
_04155
Position (kb) 871
872
873
874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.126 kb on - strand at 871.126 kb on - strand at 871.152 kb on + strand at 871.153 kb on - strand at 871.153 kb on - strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.157 kb on - strand at 871.164 kb on + strand at 871.176 kb on - strand at 871.181 kb on + strand at 871.181 kb on + strand at 871.182 kb on - strand at 871.182 kb on - strand at 871.193 kb on - strand at 871.236 kb on - strand at 871.236 kb on - strand at 871.269 kb on + strand at 871.322 kb on + strand, within IAI47_04145 at 871.322 kb on + strand, within IAI47_04145 at 871.323 kb on - strand, within IAI47_04145 at 871.402 kb on + strand, within IAI47_04145 at 871.402 kb on + strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.403 kb on - strand, within IAI47_04145 at 871.413 kb on + strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.414 kb on - strand, within IAI47_04145 at 871.416 kb on + strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.417 kb on - strand, within IAI47_04145 at 871.432 kb on + strand, within IAI47_04145 at 871.433 kb on - strand, within IAI47_04145 at 871.433 kb on - strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.434 kb on + strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.435 kb on - strand, within IAI47_04145 at 871.445 kb on - strand, within IAI47_04145 at 871.487 kb on - strand, within IAI47_04145 at 871.508 kb on - strand, within IAI47_04145 at 871.508 kb on - strand, within IAI47_04145 at 871.577 kb on + strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.578 kb on - strand, within IAI47_04145 at 871.609 kb on + strand at 871.609 kb on + strand at 871.610 kb on - strand at 871.610 kb on - strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.621 kb on + strand at 871.622 kb on - strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.627 kb on + strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.628 kb on - strand at 871.663 kb on - strand at 871.670 kb on + strand at 871.722 kb on + strand at 871.722 kb on + strand at 871.723 kb on - strand at 871.751 kb on + strand at 871.752 kb on - strand at 871.752 kb on - strand at 871.752 kb on - strand at 871.769 kb on - strand at 871.784 kb on + strand at 871.784 kb on + strand at 871.784 kb on + strand at 871.785 kb on - strand at 871.790 kb on + strand at 871.806 kb on + strand at 871.806 kb on + strand at 871.819 kb on + strand at 871.820 kb on - strand at 871.826 kb on + strand at 871.827 kb on - strand at 871.827 kb on - strand at 871.827 kb on - strand at 871.839 kb on + strand at 871.839 kb on + strand at 871.839 kb on + strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.840 kb on - strand at 871.844 kb on - strand at 871.844 kb on - strand at 871.844 kb on - strand at 871.850 kb on + strand at 871.851 kb on - strand at 871.851 kb on - strand at 871.853 kb on + strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.854 kb on - strand at 871.855 kb on + strand at 871.855 kb on + strand at 871.856 kb on - strand at 871.856 kb on - strand at 871.856 kb on - strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.870 kb on + strand at 871.907 kb on + strand at 871.907 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.949 kb on + strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.950 kb on - strand at 871.985 kb on - strand at 872.004 kb on + strand at 872.005 kb on - strand at 872.038 kb on - strand at 872.054 kb on - strand at 872.054 kb on - strand at 872.069 kb on + strand at 872.088 kb on - strand at 872.088 kb on - strand at 872.117 kb on + strand, within IAI47_04150 at 872.117 kb on + strand, within IAI47_04150 at 872.118 kb on - strand, within IAI47_04150 at 872.203 kb on + strand, within IAI47_04150 at 872.203 kb on + strand, within IAI47_04150 at 872.204 kb on - strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.226 kb on + strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.227 kb on - strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.321 kb on + strand, within IAI47_04150 at 872.322 kb on - strand, within IAI47_04150 at 872.322 kb on - strand, within IAI47_04150 at 872.493 kb on + strand, within IAI47_04150 at 872.493 kb on + strand, within IAI47_04150 at 872.494 kb on - strand, within IAI47_04150 at 872.494 kb on - strand, within IAI47_04150 at 872.622 kb on + strand, within IAI47_04150 at 872.623 kb on - strand, within IAI47_04150 at 872.623 kb on - strand, within IAI47_04150 at 872.660 kb on - strand, within IAI47_04150 at 872.667 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.903 kb on + strand, within IAI47_04150 at 872.904 kb on - strand, within IAI47_04150 at 872.925 kb on + strand, within IAI47_04150 at 872.926 kb on - strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.973 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 873.003 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.098 kb on + strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.164 kb on + strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.375 kb on - strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.395 kb on + strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.444 kb on + strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.470 kb on + strand, within IAI47_04150 at 873.471 kb on - strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.511 kb on - strand, within IAI47_04150 at 873.514 kb on + strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.602 kb on + strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.686 kb on - strand at 873.686 kb on - strand at 873.726 kb on + strand at 873.726 kb on + strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.730 kb on - strand at 873.730 kb on - strand at 873.739 kb on + strand at 873.774 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.046 kb on - strand, within IAI47_04155 at 874.055 kb on + strand, within IAI47_04155 at 874.056 kb on - strand, within IAI47_04155 at 874.182 kb on + strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.201 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.293 kb on - strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.517 kb on - strand, within IAI47_04155 at 874.529 kb on + strand, within IAI47_04155 at 874.530 kb on - strand, within IAI47_04155 at 874.556 kb on + strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 870,935 - IAI47_04140 0.64 +0.6 870,935 - IAI47_04140 0.64 -1.2 870,935 - IAI47_04140 0.64 +0.4 871,034 + IAI47_04140 0.79 +1.4 871,034 + IAI47_04140 0.79 -1.0 871,034 + IAI47_04140 0.79 +0.4 871,034 + IAI47_04140 0.79 -1.6 871,034 + IAI47_04140 0.79 -1.0 871,035 - IAI47_04140 0.79 -1.5 871,035 - IAI47_04140 0.79 +0.4 871,044 + IAI47_04140 0.81 +0.6 871,044 + IAI47_04140 0.81 -0.1 871,044 + IAI47_04140 0.81 -1.2 871,044 + IAI47_04140 0.81 -2.2 871,045 - IAI47_04140 0.81 -0.0 871,045 - IAI47_04140 0.81 +1.4 871,064 + IAI47_04140 0.84 +2.0 871,064 + IAI47_04140 0.84 +0.9 871,064 + IAI47_04140 0.84 -1.2 871,064 + IAI47_04140 0.84 +2.1 871,126 - +2.0 871,126 - +0.9 871,152 + -1.8 871,153 - +1.8 871,153 - -0.6 871,156 + -0.9 871,156 + +0.6 871,156 + +1.5 871,156 + -2.2 871,157 - -2.1 871,164 + +0.2 871,176 - +0.4 871,181 + -1.2 871,181 + +1.0 871,182 - +0.5 871,182 - +1.3 871,193 - +0.4 871,236 - -0.2 871,236 - -0.4 871,269 + -0.3 871,322 + IAI47_04145 0.15 -0.8 871,322 + IAI47_04145 0.15 -1.2 871,323 - IAI47_04145 0.15 -0.3 871,402 + IAI47_04145 0.37 +0.1 871,402 + IAI47_04145 0.37 -1.4 871,403 - IAI47_04145 0.38 -2.4 871,403 - IAI47_04145 0.38 +1.2 871,403 - IAI47_04145 0.38 -0.9 871,403 - IAI47_04145 0.38 -0.7 871,403 - IAI47_04145 0.38 +1.4 871,403 - IAI47_04145 0.38 -0.5 871,413 + IAI47_04145 0.40 +1.4 871,414 - IAI47_04145 0.41 +2.1 871,414 - IAI47_04145 0.41 -0.7 871,414 - IAI47_04145 0.41 -1.4 871,414 - IAI47_04145 0.41 +1.4 871,414 - IAI47_04145 0.41 +1.6 871,416 + IAI47_04145 0.41 +1.1 871,417 - IAI47_04145 0.41 -1.1 871,417 - IAI47_04145 0.41 -0.3 871,417 - IAI47_04145 0.41 +1.1 871,432 + IAI47_04145 0.46 -0.2 871,433 - IAI47_04145 0.46 -1.3 871,433 - IAI47_04145 0.46 -0.7 871,434 + IAI47_04145 0.46 -1.2 871,434 + IAI47_04145 0.46 -0.0 871,434 + IAI47_04145 0.46 -0.6 871,434 + IAI47_04145 0.46 -1.5 871,434 + IAI47_04145 0.46 +1.3 871,434 + IAI47_04145 0.46 -2.3 871,435 - IAI47_04145 0.46 +0.4 871,435 - IAI47_04145 0.46 -1.9 871,435 - IAI47_04145 0.46 +1.0 871,445 - IAI47_04145 0.49 -1.2 871,487 - IAI47_04145 0.61 +0.5 871,508 - IAI47_04145 0.67 -2.6 871,508 - IAI47_04145 0.67 -0.6 871,577 + IAI47_04145 0.86 +2.0 871,578 - IAI47_04145 0.86 -0.8 871,578 - IAI47_04145 0.86 +0.9 871,578 - IAI47_04145 0.86 -0.9 871,609 + +0.2 871,609 + +2.3 871,610 - +0.4 871,610 - -0.9 871,621 + -3.4 871,621 + +1.1 871,621 + +0.6 871,621 + -1.2 871,622 - +0.7 871,627 + +1.1 871,627 + +0.6 871,627 + +0.8 871,627 + +0.4 871,627 + +0.0 871,627 + -0.1 871,627 + -0.7 871,627 + +0.9 871,627 + -0.7 871,628 - -0.1 871,628 - +1.0 871,628 - -0.2 871,628 - -0.5 871,628 - +0.3 871,628 - +1.0 871,663 - -2.6 871,670 + +1.8 871,722 + -0.2 871,722 + -0.6 871,723 - -1.4 871,751 + +1.7 871,752 - +1.1 871,752 - +0.4 871,752 - +0.7 871,769 - -2.6 871,784 + +1.9 871,784 + +0.4 871,784 + -1.4 871,785 - +1.5 871,790 + -0.5 871,806 + +1.1 871,806 + +2.6 871,819 + -0.9 871,820 - +0.6 871,826 + +2.4 871,827 - -0.9 871,827 - -0.6 871,827 - +2.9 871,839 + +1.6 871,839 + -0.3 871,839 + +0.6 871,840 - -0.3 871,840 - +0.2 871,840 - 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Or see this region's nucleotide sequence