Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03650 and IAI47_03655 are separated by 534 nucleotides IAI47_03655 and IAI47_03660 are separated by 840 nucleotides
IAI47_03650: IAI47_03650 - sugar porter family MFS transporter, at 758,200 to 759,597
_03650
IAI47_03655: IAI47_03655 - methionine adenosyltransferase, at 760,132 to 761,283
_03655
IAI47_03660: IAI47_03660 - biosynthetic arginine decarboxylase, at 762,124 to 764,100
_03660
Position (kb) 760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 759.136 kb on - strand, within IAI47_03650 at 759.141 kb on + strand, within IAI47_03650 at 759.141 kb on + strand, within IAI47_03650 at 759.142 kb on - strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.210 kb on - strand, within IAI47_03650 at 759.223 kb on - strand, within IAI47_03650 at 759.223 kb on - strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.352 kb on - strand, within IAI47_03650 at 759.388 kb on - strand, within IAI47_03650 at 759.453 kb on + strand, within IAI47_03650 at 759.454 kb on - strand, within IAI47_03650 at 759.454 kb on - strand, within IAI47_03650 at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.561 kb on + strand at 759.585 kb on + strand at 759.585 kb on + strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.614 kb on - strand at 759.614 kb on - strand at 759.614 kb on - strand at 759.621 kb on + strand at 759.629 kb on + strand at 759.720 kb on + strand at 759.721 kb on - strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.767 kb on - strand at 759.796 kb on + strand at 759.832 kb on - strand at 759.835 kb on - strand at 759.838 kb on + strand at 759.838 kb on + strand at 759.855 kb on - strand at 759.866 kb on - strand at 759.868 kb on - strand at 759.928 kb on + strand at 759.929 kb on - strand at 759.929 kb on - strand at 759.957 kb on + strand at 760.007 kb on + strand at 760.007 kb on + strand at 760.008 kb on - strand at 760.020 kb on + strand at 760.025 kb on + strand at 760.025 kb on + strand at 760.026 kb on - strand at 760.026 kb on - strand at 760.026 kb on - strand at 760.084 kb on + strand at 760.133 kb on + strand at 760.133 kb on + strand at 760.133 kb on + strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.386 kb on - strand at 761.386 kb on - strand at 761.386 kb on - strand at 761.416 kb on - strand at 761.416 kb on - strand at 761.419 kb on - strand at 761.419 kb on - strand at 761.428 kb on - strand at 761.478 kb on - strand at 761.478 kb on - strand at 761.526 kb on + strand at 761.526 kb on + strand at 761.527 kb on - strand at 761.573 kb on + strand at 761.582 kb on - strand at 761.589 kb on - strand at 761.590 kb on + strand at 761.590 kb on + strand at 761.591 kb on - strand at 761.591 kb on - strand at 761.610 kb on - strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.702 kb on - strand at 761.702 kb on - strand at 761.702 kb on - strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.816 kb on - strand at 761.816 kb on - strand at 761.816 kb on - strand at 761.816 kb on - strand at 761.861 kb on + strand at 761.861 kb on + strand at 761.862 kb on - strand at 761.921 kb on - strand at 761.921 kb on - strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.942 kb on - strand at 761.942 kb on - strand at 761.942 kb on - strand at 761.942 kb on - strand at 761.950 kb on + strand at 761.980 kb on + strand at 761.980 kb on + strand at 761.981 kb on - strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.987 kb on - strand at 761.987 kb on - strand at 761.987 kb on - strand at 761.987 kb on - strand at 762.043 kb on + strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.067 kb on + strand at 762.076 kb on + strand at 762.077 kb on - strand at 762.095 kb on + strand at 762.096 kb on - strand at 762.096 kb on - strand at 762.144 kb on + strand at 762.144 kb on + strand at 762.144 kb on + strand at 762.145 kb on - strand at 762.145 kb on - strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.235 kb on - strand at 762.235 kb on - strand at 762.235 kb on - strand at 762.238 kb on + strand at 762.238 kb on + strand at 762.238 kb on + strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.269 kb on - strand at 762.269 kb on - strand at 762.269 kb on - strand at 762.269 kb on - strand at 762.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 759,136 - IAI47_03650 0.67 +1.4 759,141 + IAI47_03650 0.67 -0.9 759,141 + IAI47_03650 0.67 -0.6 759,142 - IAI47_03650 0.67 -1.2 759,144 + IAI47_03650 0.68 +1.4 759,144 + IAI47_03650 0.68 -0.3 759,144 + IAI47_03650 0.68 -0.1 759,144 + IAI47_03650 0.68 +0.8 759,144 + IAI47_03650 0.68 +1.6 759,144 + IAI47_03650 0.68 -0.6 759,144 + IAI47_03650 0.68 +0.7 759,144 + IAI47_03650 0.68 -0.6 759,144 + IAI47_03650 0.68 +1.8 759,144 + IAI47_03650 0.68 -0.6 759,144 + IAI47_03650 0.68 -1.4 759,145 - IAI47_03650 0.68 +0.6 759,145 - IAI47_03650 0.68 -0.1 759,145 - IAI47_03650 0.68 +0.4 759,145 - IAI47_03650 0.68 +0.6 759,210 - IAI47_03650 0.72 +0.6 759,223 - IAI47_03650 0.73 +0.4 759,223 - IAI47_03650 0.73 +1.4 759,224 + IAI47_03650 0.73 -0.4 759,224 + IAI47_03650 0.73 -2.8 759,224 + IAI47_03650 0.73 -1.4 759,225 - IAI47_03650 0.73 +0.4 759,225 - IAI47_03650 0.73 -0.0 759,225 - IAI47_03650 0.73 +1.2 759,225 - IAI47_03650 0.73 +0.2 759,225 - IAI47_03650 0.73 +0.1 759,225 - IAI47_03650 0.73 +1.1 759,225 - IAI47_03650 0.73 +1.4 759,225 - IAI47_03650 0.73 +0.4 759,225 - IAI47_03650 0.73 +0.4 759,225 - IAI47_03650 0.73 +1.5 759,225 - IAI47_03650 0.73 +0.8 759,225 - IAI47_03650 0.73 -2.1 759,352 - IAI47_03650 0.82 +0.4 759,388 - IAI47_03650 0.85 -0.1 759,453 + IAI47_03650 0.90 +1.7 759,454 - IAI47_03650 0.90 -0.4 759,454 - IAI47_03650 0.90 +1.0 759,547 + +0.1 759,547 + +0.1 759,547 + +1.9 759,547 + +0.4 759,547 + +0.9 759,547 + -0.9 759,547 + +1.8 759,547 + +0.2 759,547 + +1.0 759,548 - +1.1 759,548 - -1.5 759,548 - -1.3 759,548 - +0.3 759,548 - +0.3 759,548 - -0.0 759,548 - -0.5 759,548 - +1.5 759,548 - -0.1 759,548 - +1.4 759,561 + -0.1 759,585 + +0.4 759,585 + +0.6 759,586 - +0.9 759,586 - +0.9 759,586 - +1.1 759,586 - +0.1 759,600 + +1.5 759,600 + +0.6 759,600 + +1.8 759,600 + +0.9 759,601 - +2.1 759,601 - +2.4 759,601 - +0.4 759,601 - -1.6 759,614 - -1.2 759,614 - +0.4 759,614 - +0.5 759,621 + -0.3 759,629 + +0.4 759,720 + +0.8 759,721 - -2.1 759,742 + -0.1 759,742 + -1.0 759,742 + +1.1 759,742 + -0.2 759,742 + +0.4 759,742 + +1.4 759,743 - +1.1 759,743 - +0.0 759,743 - +0.4 759,743 - -0.9 759,754 + -1.9 759,754 + +0.2 759,754 + +1.8 759,754 + -0.6 759,754 + +0.5 759,754 + +1.1 759,754 + +0.4 759,755 - -0.2 759,755 - -0.7 759,755 - -0.3 759,755 - -0.6 759,755 - +1.0 759,755 - +0.1 759,755 - -2.8 759,755 - +0.7 759,755 - -0.6 759,755 - +1.5 759,756 + +0.7 759,756 + -0.4 759,756 + -0.5 759,756 + -1.6 759,756 + +0.4 759,757 - +1.5 759,757 - +1.6 759,757 - +2.0 759,757 - +0.1 759,767 - -1.3 759,796 + -0.2 759,832 - -0.0 759,835 - +0.6 759,838 + -0.0 759,838 + -1.2 759,855 - +0.3 759,866 - -1.2 759,868 - +1.4 759,928 + -0.3 759,929 - -0.0 759,929 - +1.5 759,957 + +1.7 760,007 + +1.2 760,007 + -0.6 760,008 - -0.8 760,020 + +1.4 760,025 + -0.2 760,025 + -0.2 760,026 - +0.6 760,026 - -1.5 760,026 - -0.6 760,084 + +1.5 760,133 + +2.1 760,133 + -1.0 760,133 + -1.9 760,134 - +1.4 760,134 - -0.7 760,134 - +1.0 760,134 - +1.1 760,134 - -0.0 761,383 - +0.5 761,383 - -0.3 761,383 - -1.6 761,383 - +0.4 761,383 - -1.2 761,386 - -1.0 761,386 - -0.8 761,386 - -0.1 761,416 - -1.3 761,416 - +0.4 761,419 - +1.2 761,419 - +1.2 761,428 - +1.7 761,478 - -1.3 761,478 - -0.8 761,526 + -0.2 761,526 + -0.7 761,527 - +0.6 761,573 + +1.2 761,582 - -0.2 761,589 - -2.8 761,590 + +0.4 761,590 + +0.6 761,591 - +2.0 761,591 - -1.2 761,610 - -0.4 761,701 + -0.2 761,701 + +0.0 761,701 + -0.8 761,701 + -0.6 761,701 + +0.4 761,702 - -1.2 761,702 - -0.6 761,702 - +0.1 761,714 + -0.0 761,714 + -1.4 761,714 + +1.5 761,714 + -1.2 761,715 - -0.3 761,715 - +2.5 761,715 - -0.5 761,715 - -1.3 761,715 - +1.1 761,715 - +1.9 761,715 - -0.0 761,715 - -0.4 761,715 - -0.6 761,720 + +0.1 761,720 + +2.3 761,720 + +1.9 761,720 + -0.4 761,720 + +0.6 761,721 - +0.4 761,721 - +1.1 761,721 - -1.4 761,721 - -0.3 761,721 - -2.3 761,721 - -1.9 761,721 - -0.3 761,815 + +1.9 761,815 + -1.2 761,815 + -0.2 761,815 + +1.1 761,815 + -0.6 761,815 + +2.0 761,815 + -0.4 761,815 + -0.8 761,815 + +0.6 761,816 - -0.6 761,816 - -0.2 761,816 - +0.1 761,816 - -0.1 761,861 + +1.3 761,861 + +0.7 761,862 - -0.2 761,921 - +0.2 761,921 - -0.5 761,933 + +0.4 761,933 + -2.5 761,933 + +0.7 761,933 + -0.2 761,933 + -0.6 761,933 + +1.5 761,933 + +0.5 761,933 + +2.7 761,933 + +1.5 761,934 - -1.2 761,934 - +0.2 761,934 - +0.2 761,934 - +0.4 761,934 - +1.7 761,934 - -0.3 761,934 - -1.1 761,934 - -0.9 761,934 - +0.1 761,937 + +2.0 761,937 + +1.2 761,937 + +0.4 761,937 + +0.4 761,937 + -0.8 761,938 - -0.0 761,938 - +0.1 761,938 - +0.1 761,938 - +0.5 761,938 - -0.6 761,938 - +0.9 761,938 - -0.9 761,941 + -0.0 761,941 + +1.7 761,941 + +1.8 761,941 + -0.9 761,941 + +0.5 761,941 + +0.2 761,941 + +0.4 761,942 - -0.2 761,942 - +0.2 761,942 - -0.6 761,942 - +0.2 761,950 + -0.4 761,980 + -0.0 761,980 + +1.7 761,981 - -1.4 761,986 + -0.1 761,986 + +1.3 761,986 + +0.7 761,986 + +0.6 761,986 + +0.0 761,986 + -0.0 761,986 + -1.4 761,986 + +0.4 761,986 + +0.7 761,987 - -1.7 761,987 - -1.4 761,987 - -0.1 761,987 - +0.9 762,043 + +0.8 762,044 - -1.0 762,044 - +0.6 762,044 - -0.7 762,044 - +0.4 762,044 - +0.8 762,067 + +0.7 762,076 + +0.0 762,077 - +2.7 762,095 + +2.2 762,096 - -2.0 762,096 - -0.2 762,144 + -1.2 762,144 + +0.2 762,144 + -0.3 762,145 - +0.7 762,145 - +0.3 762,234 + +0.1 762,234 + -0.3 762,234 + +0.1 762,234 + -0.3 762,234 + -1.2 762,234 + -0.1 762,234 + -1.4 762,235 - +0.4 762,235 - -0.6 762,235 - +3.2 762,238 + +0.2 762,238 + -0.3 762,238 + +0.4 762,239 - -1.9 762,239 - -0.4 762,239 - -0.4 762,239 - -0.6 762,239 - -0.9 762,239 - -1.1 762,265 + -0.8 762,265 + +0.7 762,265 + -0.4 762,265 + +0.7 762,265 + +0.4 762,265 + +1.4 762,265 + -0.4 762,265 + +1.0 762,265 + +1.3 762,265 + -0.0 762,265 + +2.0 762,265 + -1.2 762,265 + -1.3 762,265 + +1.1 762,265 + +1.1 762,266 - -0.2 762,266 - -0.6 762,266 - +0.7 762,266 - -0.3 762,266 - +1.3 762,266 - -0.3 762,266 - +1.4 762,266 - -1.2 762,266 - -0.8 762,266 - -0.3 762,266 - -0.3 762,266 - +0.4 762,266 - -0.6 762,266 - -0.2 762,266 - -1.6 762,266 - +1.1 762,266 - -0.2 762,268 + -2.5 762,268 + +0.9 762,268 + -1.9 762,268 + -0.6 762,268 + +0.1 762,268 + +1.4 762,269 - +0.3 762,269 - +0.2 762,269 - -0.4 762,269 - -0.6 762,269 - +0.9
Or see this region's nucleotide sequence