Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01960 and IAI47_01965 are separated by 57 nucleotides IAI47_01965 and IAI47_01970 are separated by 303 nucleotides IAI47_01970 and IAI47_01975 are separated by 513 nucleotides
IAI47_01960: IAI47_01960 - FUSC family protein, at 427,359 to 429,434
_01960
IAI47_01965: IAI47_01965 - cAMP-activated global transcriptional regulator CRP, at 429,492 to 430,124
_01965
IAI47_01970: IAI47_01970 - OsmC family protein, at 430,428 to 430,832
_01970
IAI47_01975: IAI47_01975 - phosphoribulokinase, at 431,346 to 432,215
_01975
Position (kb) 430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 429.453 kb on - strand at 430.145 kb on - strand at 430.145 kb on - strand at 430.304 kb on - strand at 430.304 kb on - strand at 430.304 kb on - strand at 430.346 kb on + strand at 430.346 kb on + strand at 430.374 kb on + strand at 430.375 kb on - strand at 430.389 kb on + strand at 430.410 kb on + strand at 430.411 kb on - strand at 430.450 kb on + strand at 430.451 kb on - strand at 430.451 kb on - strand at 430.451 kb on - strand at 430.495 kb on + strand, within IAI47_01970 at 430.495 kb on + strand, within IAI47_01970 at 430.495 kb on + strand, within IAI47_01970 at 430.585 kb on + strand, within IAI47_01970 at 430.586 kb on - strand, within IAI47_01970 at 430.608 kb on - strand, within IAI47_01970 at 430.630 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.694 kb on + strand, within IAI47_01970 at 430.695 kb on - strand, within IAI47_01970 at 430.706 kb on + strand, within IAI47_01970 at 430.707 kb on - strand, within IAI47_01970 at 430.707 kb on - strand, within IAI47_01970 at 430.707 kb on - strand, within IAI47_01970 at 430.722 kb on - strand, within IAI47_01970 at 430.722 kb on - strand, within IAI47_01970 at 430.761 kb on + strand, within IAI47_01970 at 430.761 kb on + strand, within IAI47_01970 at 430.762 kb on - strand, within IAI47_01970 at 430.788 kb on - strand, within IAI47_01970 at 430.802 kb on + strand at 430.803 kb on - strand at 430.803 kb on - strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.830 kb on + strand at 430.830 kb on + strand at 430.831 kb on - strand at 430.831 kb on - strand at 430.851 kb on - strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.901 kb on - strand at 430.901 kb on - strand at 430.914 kb on + strand at 430.914 kb on + strand at 430.914 kb on + strand at 430.915 kb on - strand at 430.915 kb on - strand at 430.931 kb on + strand at 430.931 kb on + strand at 430.934 kb on + strand at 430.934 kb on + strand at 430.934 kb on + strand at 430.934 kb on + strand at 430.935 kb on - strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.165 kb on + strand at 431.166 kb on - strand at 431.166 kb on - strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.176 kb on - strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.268 kb on + strand at 431.269 kb on - strand at 431.269 kb on - strand at 431.269 kb on - strand at 431.297 kb on + strand at 431.297 kb on + strand at 431.297 kb on + strand at 431.297 kb on + strand at 431.298 kb on - strand at 431.298 kb on - strand at 431.298 kb on - strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.360 kb on + strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.441 kb on + strand, within IAI47_01975 at 431.442 kb on - strand, within IAI47_01975 at 431.442 kb on - strand, within IAI47_01975 at 431.442 kb on - strand, within IAI47_01975 at 431.485 kb on + strand, within IAI47_01975 at 431.498 kb on + strand, within IAI47_01975 at 431.499 kb on - strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.648 kb on - strand, within IAI47_01975 at 431.648 kb on - strand, within IAI47_01975 at 431.648 kb on - strand, within IAI47_01975 at 431.745 kb on - strand, within IAI47_01975 at 431.792 kb on + strand, within IAI47_01975 at 431.792 kb on + strand, within IAI47_01975 at 431.792 kb on + strand, within IAI47_01975 at 431.793 kb on - strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 429,453 - +0.0 430,145 - +0.4 430,145 - -0.4 430,304 - -0.1 430,304 - -1.2 430,304 - +1.0 430,346 + -0.3 430,346 + +0.0 430,374 + -1.0 430,375 - +0.0 430,389 + +2.7 430,410 + +0.4 430,411 - -0.6 430,450 + +2.0 430,451 - -1.4 430,451 - -0.9 430,451 - +0.3 430,495 + IAI47_01970 0.17 -0.3 430,495 + IAI47_01970 0.17 -0.1 430,495 + IAI47_01970 0.17 -2.2 430,585 + IAI47_01970 0.39 -0.1 430,586 - IAI47_01970 0.39 -1.0 430,608 - IAI47_01970 0.44 +0.1 430,630 + IAI47_01970 0.50 +0.4 430,673 + IAI47_01970 0.60 -0.2 430,673 + IAI47_01970 0.60 +1.4 430,673 + IAI47_01970 0.60 -0.0 430,673 + IAI47_01970 0.60 +1.0 430,673 + IAI47_01970 0.60 -0.2 430,694 + IAI47_01970 0.66 -1.1 430,695 - IAI47_01970 0.66 +2.7 430,706 + IAI47_01970 0.69 +0.5 430,707 - IAI47_01970 0.69 -0.3 430,707 - IAI47_01970 0.69 -0.6 430,707 - IAI47_01970 0.69 -1.2 430,722 - IAI47_01970 0.73 -1.7 430,722 - IAI47_01970 0.73 +0.1 430,761 + IAI47_01970 0.82 +0.0 430,761 + IAI47_01970 0.82 -1.3 430,762 - IAI47_01970 0.82 +1.1 430,788 - IAI47_01970 0.89 +0.4 430,802 + +0.7 430,803 - +1.3 430,803 - +1.6 430,808 + +0.1 430,808 + -2.2 430,808 + -1.0 430,808 + -0.6 430,808 + -0.5 430,808 + +0.6 430,808 + +0.9 430,808 + -0.6 430,808 + +0.0 430,808 + -0.9 430,808 + -0.8 430,809 - +1.5 430,809 - -0.5 430,809 - +0.9 430,809 - +0.1 430,809 - +0.0 430,809 - -0.2 430,809 - +0.2 430,809 - +0.2 430,809 - +0.3 430,809 - -0.9 430,809 - -0.8 430,809 - -2.6 430,809 - +2.1 430,809 - -0.9 430,812 + -0.4 430,812 + -1.4 430,812 + +1.4 430,812 + +0.2 430,812 + -0.6 430,812 + +0.1 430,812 + -2.0 430,812 + -1.0 430,812 + -0.1 430,812 + -1.0 430,812 + -3.2 430,812 + +0.1 430,812 + +2.0 430,812 + +1.4 430,813 - +2.2 430,813 - -0.5 430,813 - +0.0 430,813 - +0.4 430,813 - -0.4 430,813 - -2.2 430,813 - -0.4 430,813 - +0.3 430,813 - +0.4 430,813 - -0.4 430,830 + +1.6 430,830 + +2.4 430,831 - -1.6 430,831 - +1.1 430,851 - +0.7 430,900 + +0.4 430,900 + +1.0 430,900 + +0.8 430,901 - -0.1 430,901 - -2.6 430,914 + +0.1 430,914 + +0.0 430,914 + +1.4 430,915 - -1.2 430,915 - -2.2 430,931 + -0.9 430,931 + -0.4 430,934 + +2.4 430,934 + -0.9 430,934 + -1.8 430,934 + -2.3 430,935 - +0.2 431,063 + -1.2 431,063 + +0.2 431,063 + -0.6 431,063 + -1.3 431,063 + +0.2 431,063 + -1.4 431,063 + +0.8 431,063 + -2.2 431,063 + -0.6 431,063 - +1.0 431,064 - -1.7 431,064 - -0.7 431,064 - -0.6 431,064 - -0.2 431,064 - -0.3 431,064 - -0.6 431,064 - -0.7 431,157 + +1.8 431,157 + -0.3 431,157 + -0.6 431,157 + -1.3 431,157 + +0.9 431,157 + +0.5 431,157 + +0.0 431,158 - -0.3 431,158 - +1.0 431,158 - +0.8 431,158 - +0.4 431,158 - +0.6 431,158 - -0.4 431,158 - -0.3 431,158 - +2.0 431,158 - +2.4 431,158 - -0.2 431,158 - +0.4 431,158 - +0.4 431,158 - +0.7 431,158 - +1.0 431,158 - -0.4 431,158 - +1.0 431,158 - +0.1 431,158 - +2.6 431,165 + -3.1 431,166 - -0.9 431,166 - -0.6 431,175 + +0.1 431,175 + -0.6 431,176 - -1.6 431,242 + +2.0 431,242 + +1.9 431,242 + -1.4 431,242 + +0.2 431,242 + -2.0 431,242 + -0.4 431,242 + -0.1 431,242 + -0.0 431,242 + +0.8 431,242 + -1.2 431,242 + -2.0 431,242 + -0.1 431,242 + -0.3 431,242 + -1.0 431,242 + +0.4 431,242 + +3.7 431,243 - +0.8 431,243 - -0.2 431,243 - +1.7 431,243 - +2.7 431,243 - -2.8 431,243 - +0.8 431,243 - +0.6 431,243 - -0.4 431,243 - +0.1 431,243 - -2.2 431,243 - +0.4 431,243 - -1.8 431,243 - +1.2 431,268 + -0.3 431,269 - +1.0 431,269 - -0.9 431,269 - +1.0 431,297 + +1.0 431,297 + -0.9 431,297 + +0.4 431,297 + +0.4 431,298 - +0.0 431,298 - -1.7 431,298 - +2.7 431,347 + +2.0 431,347 + +1.0 431,347 + -0.4 431,348 - +0.4 431,348 - +1.0 431,348 - +2.3 431,348 - -0.4 431,348 - +0.3 431,348 - -1.3 431,348 - +0.7 431,348 - +0.6 431,348 - +0.9 431,360 + -0.4 431,361 - +0.6 431,361 - +1.7 431,361 - -1.0 431,361 - -1.0 431,361 - +0.8 431,361 - -1.5 431,441 + IAI47_01975 0.11 +4.3 431,442 - IAI47_01975 0.11 +0.4 431,442 - IAI47_01975 0.11 +0.4 431,442 - IAI47_01975 0.11 -0.9 431,485 + IAI47_01975 0.16 +1.2 431,498 + IAI47_01975 0.17 +1.2 431,499 - IAI47_01975 0.18 -1.0 431,647 + IAI47_01975 0.35 +1.5 431,647 + IAI47_01975 0.35 +0.0 431,647 + IAI47_01975 0.35 -0.3 431,647 + IAI47_01975 0.35 +2.0 431,647 + IAI47_01975 0.35 +0.2 431,648 - IAI47_01975 0.35 +0.2 431,648 - IAI47_01975 0.35 -0.6 431,648 - IAI47_01975 0.35 +2.7 431,745 - IAI47_01975 0.46 -1.6 431,792 + IAI47_01975 0.51 -0.6 431,792 + IAI47_01975 0.51 +1.4 431,792 + IAI47_01975 0.51 -1.0 431,793 - IAI47_01975 0.51 +0.8 431,830 + IAI47_01975 0.56 -0.7 431,830 + IAI47_01975 0.56 -2.1 431,830 + IAI47_01975 0.56 +0.0 431,830 + IAI47_01975 0.56 -1.4 431,830 + IAI47_01975 0.56 -0.2 431,831 - IAI47_01975 0.56 -0.1 431,831 - IAI47_01975 0.56 -0.6 431,831 - IAI47_01975 0.56 +0.7 431,831 - IAI47_01975 0.56 +1.4
Or see this region's nucleotide sequence