Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01755 and IAI47_01760 are separated by 29 nucleotides IAI47_01760 and IAI47_01765 are separated by 30 nucleotides IAI47_01765 and IAI47_01770 are separated by 160 nucleotides
IAI47_01755: IAI47_01755 - thiosulfate sulfurtransferase GlpE, at 384,072 to 384,398
_01755
IAI47_01760: IAI47_01760 - rhomboid family intramembrane serine protease GlpG, at 384,428 to 385,249
_01760
IAI47_01765: IAI47_01765 - DeoR/GlpR family transcriptional regulator, at 385,280 to 386,038
_01765
IAI47_01770: IAI47_01770 - maltodextrin phosphorylase, at 386,199 to 388,604
_01770
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 384.297 kb on + strand, within IAI47_01755 at 384.298 kb on - strand, within IAI47_01755 at 384.327 kb on + strand, within IAI47_01755 at 384.328 kb on - strand, within IAI47_01755 at 384.396 kb on + strand at 384.396 kb on + strand at 384.396 kb on + strand at 384.397 kb on - strand at 384.397 kb on - strand at 384.397 kb on - strand at 384.397 kb on - strand at 384.397 kb on - strand at 384.397 kb on - strand at 384.397 kb on - strand at 384.423 kb on + strand at 384.423 kb on + strand at 384.423 kb on + strand at 384.423 kb on + strand at 384.423 kb on + strand at 384.424 kb on - strand at 384.424 kb on - strand at 384.424 kb on - strand at 384.424 kb on - strand at 384.424 kb on - strand at 384.424 kb on - strand at 384.424 kb on - strand at 384.437 kb on - strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.479 kb on + strand at 384.480 kb on - strand at 384.480 kb on - strand at 384.480 kb on - strand at 384.480 kb on - strand at 384.480 kb on - strand at 384.527 kb on + strand, within IAI47_01760 at 384.528 kb on - strand, within IAI47_01760 at 384.528 kb on - strand, within IAI47_01760 at 384.528 kb on - strand, within IAI47_01760 at 384.662 kb on + strand, within IAI47_01760 at 384.663 kb on - strand, within IAI47_01760 at 384.676 kb on + strand, within IAI47_01760 at 384.676 kb on + strand, within IAI47_01760 at 384.676 kb on + strand, within IAI47_01760 at 384.677 kb on - strand, within IAI47_01760 at 384.677 kb on - strand, within IAI47_01760 at 384.748 kb on + strand, within IAI47_01760 at 384.748 kb on + strand, within IAI47_01760 at 384.749 kb on - strand, within IAI47_01760 at 384.749 kb on - strand, within IAI47_01760 at 384.749 kb on - strand, within IAI47_01760 at 384.880 kb on + strand, within IAI47_01760 at 384.881 kb on - strand, within IAI47_01760 at 384.899 kb on + strand, within IAI47_01760 at 384.899 kb on + strand, within IAI47_01760 at 384.899 kb on + strand, within IAI47_01760 at 384.899 kb on + strand, within IAI47_01760 at 384.900 kb on - strand, within IAI47_01760 at 384.900 kb on - strand, within IAI47_01760 at 384.900 kb on - strand, within IAI47_01760 at 384.900 kb on - strand, within IAI47_01760 at 384.948 kb on + strand, within IAI47_01760 at 384.948 kb on + strand, within IAI47_01760 at 384.948 kb on + strand at 384.948 kb on + strand, within IAI47_01760 at 384.949 kb on - strand, within IAI47_01760 at 384.949 kb on - strand, within IAI47_01760 at 384.949 kb on - strand, within IAI47_01760 at 384.953 kb on - strand, within IAI47_01760 at 384.953 kb on - strand, within IAI47_01760 at 384.953 kb on - strand, within IAI47_01760 at 384.953 kb on - strand, within IAI47_01760 at 385.034 kb on + strand, within IAI47_01760 at 385.034 kb on + strand, within IAI47_01760 at 385.035 kb on - strand, within IAI47_01760 at 385.050 kb on - strand, within IAI47_01760 at 385.091 kb on + strand, within IAI47_01760 at 385.092 kb on - strand, within IAI47_01760 at 385.092 kb on - strand, within IAI47_01760 at 385.092 kb on - strand, within IAI47_01760 at 385.092 kb on - strand, within IAI47_01760 at 385.092 kb on - strand, within IAI47_01760 at 385.247 kb on + strand at 385.317 kb on + strand at 385.317 kb on + strand at 385.318 kb on - strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.334 kb on + strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.335 kb on - strand at 385.342 kb on + strand at 385.356 kb on + strand, within IAI47_01765 at 385.356 kb on + strand, within IAI47_01765 at 385.356 kb on + strand, within IAI47_01765 at 385.356 kb on + strand, within IAI47_01765 at 385.357 kb on - strand, within IAI47_01765 at 385.357 kb on - strand, within IAI47_01765 at 385.357 kb on - strand, within IAI47_01765 at 385.357 kb on - strand, within IAI47_01765 at 385.357 kb on - strand, within IAI47_01765 at 385.357 kb on - strand, within IAI47_01765 at 385.567 kb on + strand, within IAI47_01765 at 385.567 kb on + strand, within IAI47_01765 at 385.567 kb on + strand, within IAI47_01765 at 385.568 kb on - strand, within IAI47_01765 at 385.568 kb on - strand, within IAI47_01765 at 385.568 kb on - strand, within IAI47_01765 at 385.568 kb on - strand, within IAI47_01765 at 385.568 kb on - strand, within IAI47_01765 at 385.573 kb on + strand, within IAI47_01765 at 385.573 kb on + strand, within IAI47_01765 at 385.573 kb on + strand, within IAI47_01765 at 385.574 kb on - strand, within IAI47_01765 at 385.626 kb on + strand, within IAI47_01765 at 385.627 kb on - strand, within IAI47_01765 at 385.627 kb on - strand, within IAI47_01765 at 385.642 kb on + strand, within IAI47_01765 at 385.643 kb on - strand, within IAI47_01765 at 385.648 kb on + strand, within IAI47_01765 at 385.649 kb on - strand, within IAI47_01765 at 385.649 kb on - strand, within IAI47_01765 at 385.756 kb on + strand, within IAI47_01765 at 385.756 kb on + strand, within IAI47_01765 at 385.756 kb on + strand, within IAI47_01765 at 385.757 kb on - strand, within IAI47_01765 at 385.757 kb on - strand, within IAI47_01765 at 385.757 kb on - strand, within IAI47_01765 at 385.778 kb on + strand, within IAI47_01765 at 385.836 kb on - strand, within IAI47_01765 at 385.867 kb on - strand, within IAI47_01765 at 385.867 kb on - strand, within IAI47_01765 at 385.958 kb on + strand, within IAI47_01765 at 385.958 kb on + strand, within IAI47_01765 at 385.958 kb on + strand, within IAI47_01765 at 385.958 kb on + strand, within IAI47_01765 at 385.958 kb on + strand, within IAI47_01765 at 385.959 kb on - strand, within IAI47_01765 at 385.959 kb on - strand, within IAI47_01765 at 385.959 kb on - strand, within IAI47_01765 at 385.964 kb on + strand at 385.964 kb on + strand at 385.964 kb on + strand at 385.965 kb on - strand at 385.965 kb on - strand at 385.965 kb on - strand at 385.972 kb on + strand at 385.972 kb on + strand at 385.973 kb on - strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.110 kb on - strand at 386.115 kb on - strand at 386.115 kb on - strand at 386.155 kb on - strand at 386.155 kb on - strand at 386.183 kb on - strand at 386.198 kb on + strand at 386.198 kb on + strand at 386.198 kb on + strand at 386.198 kb on + strand at 386.199 kb on - strand at 386.199 kb on - strand at 386.199 kb on - strand at 386.199 kb on - strand at 386.216 kb on + strand at 386.366 kb on + strand at 386.367 kb on - strand at 386.367 kb on - strand at 386.383 kb on + strand at 386.384 kb on - strand at 386.384 kb on - strand at 386.384 kb on - strand at 386.384 kb on - strand at 386.388 kb on + strand at 386.388 kb on + strand at 386.389 kb on - strand at 386.389 kb on - strand at 386.389 kb on - strand at 386.389 kb on - strand at 386.389 kb on - strand at 386.452 kb on - strand, within IAI47_01770 at 386.452 kb on - strand, within IAI47_01770 at 386.494 kb on + strand, within IAI47_01770 at 386.495 kb on - strand, within IAI47_01770 at 386.495 kb on - strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.565 kb on + strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.566 kb on - strand, within IAI47_01770 at 386.567 kb on + strand, within IAI47_01770 at 386.567 kb on + strand, within IAI47_01770 at 386.568 kb on - strand, within IAI47_01770 at 386.568 kb on - strand, within IAI47_01770 at 386.619 kb on + strand, within IAI47_01770 at 386.619 kb on + strand, within IAI47_01770 at 386.619 kb on + strand, within IAI47_01770 at 386.620 kb on - strand, within IAI47_01770 at 386.658 kb on - strand, within IAI47_01770 at 386.698 kb on - strand, within IAI47_01770 at 386.779 kb on + strand, within IAI47_01770 at 386.779 kb on + strand, within IAI47_01770 at 386.779 kb on + strand, within IAI47_01770 at 386.948 kb on + strand, within IAI47_01770 at 386.949 kb on - strand, within IAI47_01770 at 386.979 kb on + strand, within IAI47_01770 at 386.979 kb on + strand, within IAI47_01770 at 386.979 kb on + strand, within IAI47_01770 at 386.980 kb on - strand, within IAI47_01770 at 386.980 kb on - strand, within IAI47_01770 at 386.980 kb on - strand, within IAI47_01770 at 387.031 kb on - strand, within IAI47_01770 at 387.031 kb on - strand, within IAI47_01770
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 384,297 + IAI47_01755 0.69 -0.4 384,298 - IAI47_01755 0.69 +0.7 384,327 + IAI47_01755 0.78 +0.9 384,328 - IAI47_01755 0.78 -0.5 384,396 + +0.2 384,396 + +1.0 384,396 + -0.3 384,397 - -0.4 384,397 - -1.4 384,397 - +0.6 384,397 - -0.6 384,397 - +0.9 384,397 - -0.1 384,397 - -1.0 384,423 + +0.1 384,423 + -0.4 384,423 + -1.9 384,423 + +0.3 384,423 + +0.4 384,424 - -0.1 384,424 - +1.4 384,424 - -0.4 384,424 - +0.9 384,424 - +0.4 384,424 - +0.4 384,424 - +0.9 384,437 - -2.2 384,479 + +0.8 384,479 + -0.8 384,479 + -0.2 384,479 + -0.7 384,479 + +0.9 384,479 + +0.4 384,479 + +0.8 384,479 + -0.0 384,479 + +0.8 384,479 + +1.4 384,479 + -0.1 384,479 + -0.3 384,480 - +0.4 384,480 - -1.2 384,480 - +0.9 384,480 - +0.4 384,480 - +1.8 384,527 + IAI47_01760 0.12 +0.2 384,528 - IAI47_01760 0.12 +1.6 384,528 - IAI47_01760 0.12 -0.5 384,528 - IAI47_01760 0.12 +0.4 384,662 + IAI47_01760 0.28 -1.6 384,663 - IAI47_01760 0.29 -0.9 384,676 + IAI47_01760 0.30 -1.5 384,676 + IAI47_01760 0.30 +1.1 384,676 + IAI47_01760 0.30 +0.1 384,677 - IAI47_01760 0.30 -1.1 384,677 - IAI47_01760 0.30 -0.5 384,748 + IAI47_01760 0.39 -1.2 384,748 + IAI47_01760 0.39 +1.8 384,749 - IAI47_01760 0.39 +1.1 384,749 - IAI47_01760 0.39 -0.9 384,749 - IAI47_01760 0.39 -2.1 384,880 + IAI47_01760 0.55 +0.4 384,881 - IAI47_01760 0.55 +0.9 384,899 + IAI47_01760 0.57 +0.6 384,899 + IAI47_01760 0.57 +0.1 384,899 + IAI47_01760 0.57 +1.4 384,899 + IAI47_01760 0.57 -0.0 384,900 - IAI47_01760 0.57 +0.7 384,900 - IAI47_01760 0.57 -1.0 384,900 - IAI47_01760 0.57 -1.2 384,900 - IAI47_01760 0.57 +0.4 384,948 + IAI47_01760 0.63 +1.9 384,948 + IAI47_01760 0.63 +0.9 384,948 + -0.1 384,948 + IAI47_01760 0.63 -1.1 384,949 - IAI47_01760 0.63 -0.2 384,949 - IAI47_01760 0.63 -1.1 384,949 - IAI47_01760 0.63 -0.5 384,953 - IAI47_01760 0.64 +1.0 384,953 - IAI47_01760 0.64 -1.4 384,953 - IAI47_01760 0.64 -0.2 384,953 - IAI47_01760 0.64 -1.1 385,034 + IAI47_01760 0.74 +0.4 385,034 + IAI47_01760 0.74 -1.6 385,035 - IAI47_01760 0.74 -1.2 385,050 - IAI47_01760 0.76 +0.5 385,091 + IAI47_01760 0.81 -0.1 385,092 - IAI47_01760 0.81 +0.2 385,092 - IAI47_01760 0.81 -1.0 385,092 - IAI47_01760 0.81 +0.4 385,092 - IAI47_01760 0.81 -0.6 385,092 - IAI47_01760 0.81 +0.6 385,247 + +0.4 385,317 + -2.6 385,317 + -0.6 385,318 - -2.2 385,334 + -1.2 385,334 + +0.4 385,334 + -0.6 385,334 + -1.0 385,334 + +0.9 385,334 + -1.0 385,334 + +0.4 385,334 + -0.6 385,335 - -1.1 385,335 - +0.4 385,335 - -2.4 385,335 - +1.4 385,335 - -1.4 385,335 - -0.5 385,335 - -0.4 385,335 - -1.1 385,342 + +0.6 385,356 + IAI47_01765 0.10 -0.4 385,356 + IAI47_01765 0.10 +0.4 385,356 + IAI47_01765 0.10 -1.2 385,356 + IAI47_01765 0.10 -0.1 385,357 - IAI47_01765 0.10 -1.6 385,357 - IAI47_01765 0.10 -0.1 385,357 - IAI47_01765 0.10 +0.6 385,357 - IAI47_01765 0.10 -2.2 385,357 - IAI47_01765 0.10 -1.6 385,357 - IAI47_01765 0.10 -1.3 385,567 + IAI47_01765 0.38 -0.6 385,567 + IAI47_01765 0.38 +0.4 385,567 + IAI47_01765 0.38 +1.6 385,568 - IAI47_01765 0.38 +0.4 385,568 - IAI47_01765 0.38 +1.4 385,568 - IAI47_01765 0.38 -1.2 385,568 - IAI47_01765 0.38 -1.0 385,568 - IAI47_01765 0.38 -1.2 385,573 + IAI47_01765 0.39 -0.4 385,573 + IAI47_01765 0.39 -0.6 385,573 + IAI47_01765 0.39 -0.6 385,574 - IAI47_01765 0.39 -1.0 385,626 + IAI47_01765 0.46 -0.2 385,627 - IAI47_01765 0.46 -0.4 385,627 - IAI47_01765 0.46 +0.9 385,642 + IAI47_01765 0.48 -1.7 385,643 - IAI47_01765 0.48 -0.4 385,648 + IAI47_01765 0.48 +0.4 385,649 - IAI47_01765 0.49 -1.0 385,649 - IAI47_01765 0.49 -1.2 385,756 + IAI47_01765 0.63 -1.1 385,756 + IAI47_01765 0.63 +0.6 385,756 + IAI47_01765 0.63 -0.3 385,757 - IAI47_01765 0.63 -1.2 385,757 - IAI47_01765 0.63 -1.0 385,757 - IAI47_01765 0.63 -0.6 385,778 + IAI47_01765 0.66 -0.1 385,836 - IAI47_01765 0.73 -0.2 385,867 - IAI47_01765 0.77 +0.4 385,867 - IAI47_01765 0.77 +0.4 385,958 + IAI47_01765 0.89 -1.5 385,958 + IAI47_01765 0.89 +0.4 385,958 + IAI47_01765 0.89 -0.4 385,958 + IAI47_01765 0.89 -0.5 385,958 + IAI47_01765 0.89 -0.4 385,959 - IAI47_01765 0.89 +0.5 385,959 - IAI47_01765 0.89 -1.8 385,959 - IAI47_01765 0.89 -0.9 385,964 + -3.0 385,964 + -1.4 385,964 + +1.9 385,965 - -0.1 385,965 - +0.7 385,965 - +0.6 385,972 + +0.4 385,972 + +2.4 385,973 - -0.6 386,109 + +0.1 386,109 + -1.3 386,109 + -0.1 386,109 + +0.8 386,109 + +0.4 386,110 - +1.4 386,115 - +0.8 386,115 - +0.6 386,155 - +0.4 386,155 - -1.2 386,183 - -0.5 386,198 + +0.1 386,198 + +1.3 386,198 + -0.1 386,198 + -1.0 386,199 - +0.8 386,199 - -0.5 386,199 - +0.7 386,199 - +0.7 386,216 + -1.2 386,366 + -0.3 386,367 - +1.4 386,367 - +0.6 386,383 + -0.5 386,384 - -1.2 386,384 - +1.7 386,384 - +0.2 386,384 - +0.5 386,388 + -0.7 386,388 + +2.7 386,389 - +0.4 386,389 - +1.2 386,389 - -0.4 386,389 - -1.9 386,389 - +0.5 386,452 - IAI47_01770 0.11 -0.8 386,452 - IAI47_01770 0.11 +1.6 386,494 + IAI47_01770 0.12 -0.5 386,495 - IAI47_01770 0.12 -0.9 386,495 - IAI47_01770 0.12 +0.4 386,565 + IAI47_01770 0.15 +0.4 386,565 + IAI47_01770 0.15 -0.8 386,565 + IAI47_01770 0.15 +0.4 386,565 + IAI47_01770 0.15 -0.3 386,565 + IAI47_01770 0.15 +1.1 386,565 + IAI47_01770 0.15 -0.6 386,565 + IAI47_01770 0.15 -2.2 386,566 - IAI47_01770 0.15 -0.6 386,566 - IAI47_01770 0.15 -1.3 386,566 - IAI47_01770 0.15 -1.6 386,566 - IAI47_01770 0.15 -0.6 386,566 - IAI47_01770 0.15 +0.4 386,566 - IAI47_01770 0.15 +0.4 386,566 - IAI47_01770 0.15 -0.3 386,566 - IAI47_01770 0.15 +1.4 386,567 + IAI47_01770 0.15 -1.1 386,567 + IAI47_01770 0.15 -0.9 386,568 - IAI47_01770 0.15 -1.1 386,568 - IAI47_01770 0.15 -1.2 386,619 + IAI47_01770 0.17 -1.1 386,619 + IAI47_01770 0.17 -0.6 386,619 + IAI47_01770 0.17 +1.2 386,620 - IAI47_01770 0.17 +0.6 386,658 - IAI47_01770 0.19 -1.0 386,698 - IAI47_01770 0.21 -2.0 386,779 + IAI47_01770 0.24 +0.2 386,779 + IAI47_01770 0.24 -0.2 386,779 + IAI47_01770 0.24 -1.6 386,948 + IAI47_01770 0.31 +0.4 386,949 - IAI47_01770 0.31 +1.4 386,979 + IAI47_01770 0.32 +0.7 386,979 + IAI47_01770 0.32 +1.4 386,979 + IAI47_01770 0.32 +2.1 386,980 - IAI47_01770 0.32 -0.3 386,980 - IAI47_01770 0.32 -0.4 386,980 - IAI47_01770 0.32 +0.2 387,031 - IAI47_01770 0.35 +0.1 387,031 - IAI47_01770 0.35 +0.4
Or see this region's nucleotide sequence