Strain Fitness in Pantoea sp. MT58 around IAI47_21845

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
117,922	-		IAI47_21835	0.77	+0.9
118,080	+				+0.5
118,105	+				+0.8
118,105	+				+1.6
118,124	+				+0.3
118,124	+				+0.2
118,125	-				-0.5
118,125	-				-0.4
118,125	-				-0.7
118,241	+				-0.1
118,246	-				-0.2
118,280	-				+0.3
118,313	-				-0.7
118,317	+				+0.8
118,365	+				+0.9
118,386	+				-0.0
118,386	+				+2.2
118,386	+				-0.2
118,386	+				+0.5
118,386	+				-2.2
118,387	-				-0.4
118,387	-				-0.8
118,395	+				-2.0
118,428	+		IAI47_21840	0.15	-0.4
118,428	+		IAI47_21840	0.15	-0.1
118,428	+		IAI47_21840	0.15	+0.2
118,429	-		IAI47_21840	0.15	-0.7
118,461	+		IAI47_21840	0.21	-1.0
118,461	+		IAI47_21840	0.21	+0.8
118,461	+		IAI47_21840	0.21	+0.7
118,461	+		IAI47_21840	0.21	+1.3
118,461	+		IAI47_21840	0.21	+0.6
118,461	+		IAI47_21840	0.21	+0.3
118,461	+		IAI47_21840	0.21	-0.1
118,461	+		IAI47_21840	0.21	+0.9
118,461	+		IAI47_21840	0.21	-1.7
118,461	+		IAI47_21840	0.21	+0.3
118,461	+		IAI47_21840	0.21	+0.9
118,462	-		IAI47_21840	0.21	-0.4
118,462	-		IAI47_21840	0.21	-2.0
118,462	-		IAI47_21840	0.21	+1.2
118,462	-		IAI47_21840	0.21	+2.9
118,462	-		IAI47_21840	0.21	+0.2
118,462	-		IAI47_21840	0.21	-1.7
118,462	-		IAI47_21840	0.21	+0.3
118,462	-		IAI47_21840	0.21	-0.3
118,462	-		IAI47_21840	0.21	+1.0
118,462	-		IAI47_21840	0.21	+0.7
118,470	-		IAI47_21840	0.22	+0.1
118,489	+		IAI47_21840	0.26	-0.2
118,489	+		IAI47_21840	0.26	-0.3
118,490	-		IAI47_21840	0.26	+0.3
118,491	+		IAI47_21840	0.26	+1.3
118,491	+		IAI47_21840	0.26	+1.8
118,492	-		IAI47_21840	0.26	-2.0
118,492	-		IAI47_21840	0.26	+0.2
118,492	-		IAI47_21840	0.26	+1.3
118,492	-		IAI47_21840	0.26	+1.8
118,508	+		IAI47_21840	0.29	-0.3
118,508	+		IAI47_21840	0.29	-0.6
118,508	+		IAI47_21840	0.29	-1.7
118,508	+		IAI47_21840	0.29	+0.0
118,508	+		IAI47_21840	0.29	+2.0
118,508	+		IAI47_21840	0.29	+1.1
118,509	-		IAI47_21840	0.29	+1.0
118,509	-		IAI47_21840	0.29	-1.0
118,512	+		IAI47_21840	0.30	-0.7
118,513	-		IAI47_21840	0.30	+0.1
118,513	-		IAI47_21840	0.30	+1.9
118,721	+		IAI47_21840	0.68	+0.3
118,721	+		IAI47_21840	0.68	+1.0
118,721	+		IAI47_21840	0.68	-0.7
118,721	+		IAI47_21840	0.68	+0.3
118,722	-		IAI47_21840	0.68	+1.2
118,722	-		IAI47_21840	0.68	-0.1
118,722	-		IAI47_21840	0.68	+0.3
118,722	-		IAI47_21840	0.68	-1.5
118,735	-		IAI47_21840	0.71	+1.0
118,735	-		IAI47_21840	0.71	+1.1
118,746	+		IAI47_21840	0.73	+1.3
118,776	+		IAI47_21840	0.78	-0.2
118,794	+		IAI47_21840	0.82	-1.3
118,795	-		IAI47_21840	0.82	+0.2
118,845	+				-0.7
118,846	-				-0.7
118,878	+				-1.2
118,879	-				-0.9
118,879	-				-0.4
118,891	+				+0.3
118,892	-				+1.2
118,915	+				+0.7
118,915	+				-0.4
118,915	+				-0.1
118,915	+				-2.0
118,915	+				+0.1
118,915	+				-1.5
118,915	+				-1.1
118,915	+				-1.2
118,915	+				+0.8
118,915	+				-0.1
118,915	+				+2.1
118,915	+				-0.4
118,915	+				-0.1
118,915	+				-1.2
118,916	-				+1.9
118,916	-				-1.8
118,916	-				-1.4
118,916	-				+2.3
118,916	-				-1.5
118,916	-				-1.7
118,916	-				+0.0
118,916	-				+0.9
118,916	-				-1.1
118,916	-				+0.2
118,923	+				+0.3
118,923	+				+0.3
118,923	+				+1.9
118,923	+				-0.5
118,923	+				+1.3
118,923	+				-0.4
119,014	+				+2.1
119,014	+				-0.1
119,014	+				-1.2
119,014	+				+0.9
119,015	-				+0.3
119,015	-				-0.1
119,015	-				+1.3
119,046	+		IAI47_21845	0.11	-0.1
119,047	-		IAI47_21845	0.11	-0.0
119,084	+		IAI47_21845	0.14	-1.2
119,084	+		IAI47_21845	0.14	-1.2
119,085	-		IAI47_21845	0.14	-0.2
119,086	+		IAI47_21845	0.14	-1.5
119,086	+		IAI47_21845	0.14	+1.1
119,087	-		IAI47_21845	0.14	-0.8
119,087	-		IAI47_21845	0.14	+0.6
119,170	+		IAI47_21845	0.21	+0.7
119,262	+		IAI47_21845	0.29	-2.2
119,262	+		IAI47_21845	0.29	+0.6
119,365	+		IAI47_21845	0.38	+0.2
119,366	-		IAI47_21845	0.38	+0.3
119,366	-		IAI47_21845	0.38	-0.8
119,366	-		IAI47_21845	0.38	+1.0
119,366	-		IAI47_21845	0.38	-1.2
119,401	+		IAI47_21845	0.41	-1.3
119,401	+		IAI47_21845	0.41	-1.6
119,402	-		IAI47_21845	0.41	+2.1
119,489	+		IAI47_21845	0.48	+1.9
119,490	-		IAI47_21845	0.48	+0.7
119,580	+		IAI47_21845	0.56	-0.8
119,581	-		IAI47_21845	0.56	-0.2
119,581	-		IAI47_21845	0.56	-0.7
119,581	-		IAI47_21845	0.56	-1.2
119,607	+		IAI47_21845	0.58	+0.6
119,607	+		IAI47_21845	0.58	+1.1
119,607	+		IAI47_21845	0.58	+0.3
119,607	+		IAI47_21845	0.58	+0.4
119,607	+		IAI47_21845	0.58	+1.3
119,607	+		IAI47_21845	0.58	-0.0
119,607	+		IAI47_21845	0.58	-2.2
119,607	+		IAI47_21845	0.58	-1.2
119,607	+		IAI47_21845	0.58	+1.2
119,607	+		IAI47_21845	0.58	-0.7
119,608	-		IAI47_21845	0.58	+1.9
119,608	-		IAI47_21845	0.58	+0.3
119,608	-		IAI47_21845	0.58	+1.6
119,608	-		IAI47_21845	0.58	-0.3
119,608	-		IAI47_21845	0.58	+0.3
119,608	-		IAI47_21845	0.58	+0.8
119,608	-		IAI47_21845	0.58	-0.1
119,608	-		IAI47_21845	0.58	+0.3
119,608	-		IAI47_21845	0.58	+0.5
119,610	+		IAI47_21845	0.58	+0.9
119,611	-		IAI47_21845	0.58	-1.2
119,611	-		IAI47_21845	0.58	-1.0
119,611	-		IAI47_21845	0.58	-1.7
119,611	-		IAI47_21845	0.58	+0.6
119,647	+		IAI47_21845	0.61	+0.3
119,647	+		IAI47_21845	0.61	+0.9
119,647	+		IAI47_21845	0.61	+0.5
119,647	+		IAI47_21845	0.61	-0.2
119,647	+		IAI47_21845	0.61	+2.2
119,647	+		IAI47_21845	0.61	-0.2
119,648	-		IAI47_21845	0.61	-1.2
119,648	-		IAI47_21845	0.61	-0.7
119,648	-		IAI47_21845	0.61	-2.1
119,648	-		IAI47_21845	0.61	+1.7
119,736	+		IAI47_21845	0.69	+1.0
119,736	+		IAI47_21845	0.69	+1.2
119,736	+		IAI47_21845	0.69	-0.7
119,736	+		IAI47_21845	0.69	+0.3
119,737	-		IAI47_21845	0.69	+1.1
119,737	-		IAI47_21845	0.69	-0.4
119,758	+		IAI47_21845	0.71	+1.7
119,778	-		IAI47_21845	0.72	+0.5
119,799	+		IAI47_21845	0.74	-0.7
119,799	+		IAI47_21845	0.74	-0.2
119,799	+		IAI47_21845	0.74	-1.1
119,799	+		IAI47_21845	0.74	-2.1
119,800	-		IAI47_21845	0.74	+1.3
119,800	-		IAI47_21845	0.74	+0.2
119,800	-		IAI47_21845	0.74	-0.7
119,800	-		IAI47_21845	0.74	+0.8
119,800	-		IAI47_21845	0.74	-0.7
119,860	+		IAI47_21845	0.79	+1.0
119,860	+		IAI47_21845	0.79	+0.7
119,860	+		IAI47_21845	0.79	-0.7
119,861	-		IAI47_21845	0.79	-0.7
119,861	-		IAI47_21845	0.79	-0.5
119,877	+		IAI47_21845	0.81	-0.1
119,881	+		IAI47_21845	0.81	-0.9
119,881	+		IAI47_21845	0.81	-0.4
119,882	-		IAI47_21845	0.81	+0.0
119,882	-		IAI47_21845	0.81	+0.3
119,882	-		IAI47_21845	0.81	-0.5
119,882	-		IAI47_21845	0.81	-0.3
119,991	+				-0.4
119,991	+				-0.0
119,992	-				+0.3
119,992	-				-0.3
120,003	+				+0.6
120,003	+				-2.8
120,003	+				-0.5
120,003	+				+1.0
120,003	+				-0.7
120,004	-				+1.3
120,004	-				+1.5
120,004	-				+0.8
120,004	-				-1.2
120,004	-				-0.7
120,004	-				-0.7
120,004	-				-0.7
120,004	-				+0.8
120,004	-				-0.1
120,004	-				-0.9
120,004	-				+0.1
120,006	+				-0.5
120,007	-				-2.0
120,007	-				-0.1
120,007	-				+2.8
120,073	-				-0.7
120,109	+				-1.0
120,109	+				+0.7
120,109	+				+0.1
120,110	-				-0.5
120,110	-				-0.1
120,110	-				-0.5
120,110	-				-2.1
120,110	-				-0.8
120,110	-				-0.7
120,114	+				-0.5
120,114	+				-0.7
120,114	+				-0.2
120,114	+				-0.2
120,114	+				-0.7
120,114	+				-1.2
120,114	+				+0.3
120,115	-				-0.1
120,115	-				-0.9
120,115	-				-0.2
120,115	-				+0.3
120,115	-				-0.7
120,160	+				-0.3
120,160	+				-0.5
120,160	+				-0.5
120,161	-				-0.1
120,161	-				+0.1
120,172	+				-1.0
120,172	+				-0.1
120,172	+				-1.0
120,185	-				+1.8
120,220	+				-0.1
120,220	+				+1.5
120,220	+				-0.3
120,221	-				+0.3
120,221	-				+0.3
120,221	-				+0.3
120,221	-				-1.1
120,221	-				+0.3
120,260	+		IAI47_21850	0.12	+1.1
120,260	+		IAI47_21850	0.12	+1.1
120,265	+		IAI47_21850	0.12	+1.8
120,266	-		IAI47_21850	0.13	+1.2
120,291	+		IAI47_21850	0.15	-2.0
120,291	+		IAI47_21850	0.15	-0.4
120,291	+		IAI47_21850	0.15	+0.9
120,292	-		IAI47_21850	0.15	+0.6
120,297	+		IAI47_21850	0.16	-0.2
120,297	+		IAI47_21850	0.16	-0.2
120,297	+		IAI47_21850	0.16	-0.8
120,298	-		IAI47_21850	0.16	-2.1
120,298	-		IAI47_21850	0.16	+0.3
120,298	-		IAI47_21850	0.16	-0.7
120,298	-		IAI47_21850	0.16	+3.2
120,298	-		IAI47_21850	0.16	+0.2
120,298	-		IAI47_21850	0.16	-1.4
120,343	+		IAI47_21850	0.20	+1.6
120,343	+		IAI47_21850	0.20	-0.4
120,343	+		IAI47_21850	0.20	-0.4
120,343	+		IAI47_21850	0.20	-2.2
120,343	+		IAI47_21850	0.20	+1.3
120,343	+		IAI47_21850	0.20	-0.7
120,343	+		IAI47_21850	0.20	-1.7
120,343	+		IAI47_21850	0.20	+1.0
120,344	-		IAI47_21850	0.20	-2.5
120,344	-		IAI47_21850	0.20	-0.2
120,344	-		IAI47_21850	0.20	+1.9
120,358	-		IAI47_21850	0.22	+0.0
120,358	-		IAI47_21850	0.22	+0.3
120,427	+		IAI47_21850	0.29	+0.1
120,451	-		IAI47_21850	0.31	-0.5
120,468	+		IAI47_21850	0.33	-2.2
120,468	+		IAI47_21850	0.33	-2.2
120,468	+		IAI47_21850	0.33	-0.3
120,468	+		IAI47_21850	0.33	+0.0
120,468	+		IAI47_21850	0.33	-0.8
120,468	+		IAI47_21850	0.33	-0.7
120,469	-		IAI47_21850	0.33	+0.6
120,469	-		IAI47_21850	0.33	-0.2
120,469	-		IAI47_21850	0.33	-1.2
120,469	-		IAI47_21850	0.33	-0.7
120,469	-		IAI47_21850	0.33	+1.0
120,469	-		IAI47_21850	0.33	-1.1
120,473	-		IAI47_21850	0.33	+1.3
120,473	-		IAI47_21850	0.33	+0.9
120,473	-		IAI47_21850	0.33	+0.4
120,481	+		IAI47_21850	0.34	-0.4
120,482	-		IAI47_21850	0.34	+0.3
120,581	-		IAI47_21850	0.44	+1.3
120,581	-		IAI47_21850	0.44	-0.1
120,581	-		IAI47_21850	0.44	-1.0
120,581	-		IAI47_21850	0.44	-1.7
120,585	+		IAI47_21850	0.44	-0.8
120,585	+		IAI47_21850	0.44	+0.1
120,585	+		IAI47_21850	0.44	-0.6
120,585	+		IAI47_21850	0.44	-0.4
120,585	+		IAI47_21850	0.44	+1.2
120,585	+		IAI47_21850	0.44	+0.3
120,586	-		IAI47_21850	0.44	+1.1
120,586	-		IAI47_21850	0.44	+1.2
120,586	-		IAI47_21850	0.44	+0.9
120,586	-		IAI47_21850	0.44	+1.0
120,634	+		IAI47_21850	0.49	-0.1
120,634	+		IAI47_21850	0.49	-2.5
120,634	+		IAI47_21850	0.49	-1.1
120,641	+		IAI47_21850	0.50	+0.3
120,670	+		IAI47_21850	0.53	-0.7
120,670	+		IAI47_21850	0.53	-0.9
120,670	+		IAI47_21850	0.53	-1.4
120,670	+		IAI47_21850	0.53	-0.4
120,670	+		IAI47_21850	0.53	-2.1
120,670	+		IAI47_21850	0.53	-2.0
120,670	+		IAI47_21850	0.53	+1.0
120,670	+		IAI47_21850	0.53	-0.9
120,671	-		IAI47_21850	0.53	+1.3
120,671	-		IAI47_21850	0.53	+0.7
120,671	-		IAI47_21850	0.53	+1.3
120,671	-		IAI47_21850	0.53	-0.2
120,671	-		IAI47_21850	0.53	+0.3
120,671	-		IAI47_21850	0.53	-1.8
120,671	-		IAI47_21850	0.53	-0.0
120,671	-		IAI47_21850	0.53	+0.3
120,673	+		IAI47_21850	0.53	-0.7
120,673	+		IAI47_21850	0.53	-0.7
120,673	+		IAI47_21850	0.53	-1.7
120,673	+		IAI47_21850	0.53	+0.1
120,673	+		IAI47_21850	0.53	-1.0
120,673	+		IAI47_21850	0.53	+0.3
120,674	-		IAI47_21850	0.53	-0.1
120,674	-		IAI47_21850	0.53	+0.3
120,674	-		IAI47_21850	0.53	+1.3
120,674	-		IAI47_21850	0.53	+0.6
120,729	+		IAI47_21850	0.59	-1.4
120,729	+		IAI47_21850	0.59	+0.3
120,729	+		IAI47_21850	0.59	+0.1
120,729	+		IAI47_21850	0.59	+2.1
120,729	+		IAI47_21850	0.59	+0.3
120,729	+		IAI47_21850	0.59	-0.7
120,729	+		IAI47_21850	0.59	-0.9
120,729	+		IAI47_21850	0.59	-1.2
120,729	+		IAI47_21850	0.59	-0.9
120,730	-		IAI47_21850	0.59	-0.1
120,730	-		IAI47_21850	0.59	-0.7
120,730	-		IAI47_21850	0.59	-0.7
120,730	-		IAI47_21850	0.59	+1.3
120,730	-		IAI47_21850	0.59	-3.4
120,730	-		IAI47_21850	0.59	-0.0
120,730	-		IAI47_21850	0.59	+0.0
120,730	-		IAI47_21850	0.59	+0.7
120,748	+		IAI47_21850	0.60	+1.3
120,749	-		IAI47_21850	0.61	+0.8
120,749	-		IAI47_21850	0.61	-2.2
120,749	-		IAI47_21850	0.61	+2.2
120,749	-		IAI47_21850	0.61	-0.1
120,910	+		IAI47_21850	0.77	-0.2
120,940	+		IAI47_21850	0.80	+0.3
120,940	+		IAI47_21850	0.80	-2.2
120,940	+		IAI47_21850	0.80	-1.1
120,940	+		IAI47_21850	0.80	+1.9
120,941	-		IAI47_21850	0.80	-0.1
120,941	-		IAI47_21850	0.80	-0.2
120,941	-		IAI47_21850	0.80	+1.8
120,987	+		IAI47_21850	0.84	+0.6
120,987	+		IAI47_21850	0.84	+0.5
120,987	+		IAI47_21850	0.84	+0.9
120,988	-		IAI47_21850	0.84	+2.2
121,009	+		IAI47_21850	0.86	+1.8
121,009	+		IAI47_21850	0.86	-2.0
121,009	+		IAI47_21850	0.86	+0.3
121,009	+		IAI47_21850	0.86	+0.0
121,010	-		IAI47_21850	0.87	+1.8
121,010	-		IAI47_21850	0.87	+0.3
121,010	-		IAI47_21850	0.87	-2.8
121,010	-		IAI47_21850	0.87	-0.1
121,044	-				-2.2