Strain Fitness in Pantoea sp. MT58 around IAI47_19380

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
100,875	+		IAI47_19375	0.21	-1.3
100,876	-		IAI47_19375	0.21	-0.3
100,905	+		IAI47_19375	0.24	+0.3
100,905	+		IAI47_19375	0.24	-0.5
100,919	+		IAI47_19375	0.26	+0.1
100,919	+		IAI47_19375	0.26	+1.0
100,919	+		IAI47_19375	0.26	-1.0
100,919	+		IAI47_19375	0.26	-1.3
100,919	+		IAI47_19375	0.26	-1.7
100,920	-		IAI47_19375	0.26	+1.0
100,978	+		IAI47_19375	0.32	+0.3
100,978	+		IAI47_19375	0.32	-0.7
100,979	-		IAI47_19375	0.32	+0.3
100,979	-		IAI47_19375	0.32	-1.5
100,979	-		IAI47_19375	0.32	+0.7
100,988	+		IAI47_19375	0.33	+1.3
100,988	+		IAI47_19375	0.33	-0.3
100,988	+		IAI47_19375	0.33	-1.8
100,989	-		IAI47_19375	0.33	+0.3
100,989	-		IAI47_19375	0.33	-1.8
100,989	-		IAI47_19375	0.33	-1.3
100,989	-		IAI47_19375	0.33	-1.7
101,053	+		IAI47_19375	0.40	-0.1
101,053	+		IAI47_19375	0.40	+2.3
101,054	-		IAI47_19375	0.40	+0.9
101,054	-		IAI47_19375	0.40	+0.7
101,058	-		IAI47_19375	0.41	-0.7
101,069	+		IAI47_19375	0.42	-0.2
101,070	-		IAI47_19375	0.42	+0.9
101,070	-		IAI47_19375	0.42	+1.2
101,083	+		IAI47_19375	0.43	-1.7
101,084	-		IAI47_19375	0.43	+0.3
101,084	-		IAI47_19375	0.43	+1.6
101,097	+		IAI47_19375	0.45	+0.6
101,098	-		IAI47_19375	0.45	+0.1
101,098	-		IAI47_19375	0.45	-0.4
101,098	-		IAI47_19375	0.45	-0.4
101,111	+		IAI47_19375	0.46	+1.3
101,111	+		IAI47_19375	0.46	-1.0
101,111	+		IAI47_19375	0.46	-0.1
101,111	+		IAI47_19375	0.46	-0.0
101,112	-		IAI47_19375	0.46	-0.3
101,112	-		IAI47_19375	0.46	+0.7
101,112	-		IAI47_19375	0.46	-0.3
101,112	-		IAI47_19375	0.46	-0.9
101,112	-		IAI47_19375	0.46	-1.3
101,178	-		IAI47_19375	0.53	-0.9
101,178	-		IAI47_19375	0.53	-0.0
101,183	+		IAI47_19375	0.54	-1.0
101,183	+		IAI47_19375	0.54	-0.2
101,183	+		IAI47_19375	0.54	-0.1
101,184	-		IAI47_19375	0.54	+0.7
101,238	-		IAI47_19375	0.60	+1.2
101,261	+		IAI47_19375	0.62	+0.3
101,261	+		IAI47_19375	0.62	-0.5
101,261	+		IAI47_19375	0.62	+0.0
101,262	-		IAI47_19375	0.62	+0.0
101,262	-		IAI47_19375	0.62	-0.0
101,262	-		IAI47_19375	0.62	+1.1
101,287	+		IAI47_19375	0.65	-0.4
101,288	-		IAI47_19375	0.65	+1.1
101,288	-		IAI47_19375	0.65	+0.7
101,313	+		IAI47_19375	0.68	-1.5
101,313	+		IAI47_19375	0.68	+0.3
101,360	+		IAI47_19375	0.73	+0.3
101,361	-		IAI47_19375	0.73	-1.3
101,361	-		IAI47_19375	0.73	+0.7
101,361	-		IAI47_19375	0.73	+0.2
101,361	-		IAI47_19375	0.73	-1.5
101,361	-		IAI47_19375	0.73	+1.7
101,405	+		IAI47_19375	0.78	-1.5
101,433	-		IAI47_19375	0.81	+1.6
101,435	+		IAI47_19375	0.81	-2.3
101,435	+		IAI47_19375	0.81	+1.8
101,435	+		IAI47_19375	0.81	-0.3
101,436	-		IAI47_19375	0.81	-0.3
101,436	-		IAI47_19375	0.81	+0.6
101,436	-		IAI47_19375	0.81	+0.7
101,436	-		IAI47_19375	0.81	-0.0
101,436	-		IAI47_19375	0.81	-0.2
101,475	-		IAI47_19375	0.85	+2.6
101,483	+		IAI47_19375	0.86	-0.3
101,678	+				+1.3
101,679	-				-1.3
101,689	+				-0.1
101,689	+				+0.9
101,690	-				+1.0
101,690	-				-1.3
101,691	+				-0.4
101,692	-				-1.0
101,692	-				+0.3
101,713	+				-2.2
101,720	-				-0.9
101,766	-				-0.2
101,766	-				-1.5
101,802	+				-1.1
101,809	-				-1.0
101,816	+				-1.4
101,898	-				+0.0
101,898	-				+1.1
101,951	-		IAI47_19380	0.16	-0.3
101,967	+		IAI47_19380	0.18	-0.7
101,984	+		IAI47_19380	0.21	-0.2
101,994	-		IAI47_19380	0.23	-1.7
102,001	-		IAI47_19380	0.24	+0.6
102,074	-		IAI47_19380	0.37	+0.9
102,092	+		IAI47_19380	0.41	+0.9
102,115	-		IAI47_19380	0.45	-0.7
102,129	-		IAI47_19380	0.47	+0.2
102,145	-		IAI47_19380	0.50	+1.3
102,172	-		IAI47_19380	0.55	-1.5
102,314	-		IAI47_19380	0.80	+0.4
102,377	-				-0.8
102,379	-				-1.7
102,412	-				-0.3
102,471	+				-0.4
102,485	+				-1.4
102,485	+				+0.3
102,486	-				-0.1
102,486	-				+2.9
102,488	+				+0.9
102,488	+				-0.1
102,488	+				-2.5
102,489	-				+1.3
102,489	-				+0.2
102,504	-				+1.9
102,529	+				+1.3
102,530	-				+2.1
102,532	+				+0.9
102,533	-				+0.4
102,533	-				-0.4
102,575	-				-0.0
102,580	+				+0.3
102,593	+				-1.5
102,607	+				-0.7
102,607	+				+1.0
102,607	+				+1.3
102,608	-				+1.1
102,612	+				-0.7
102,612	+				+1.0
102,612	+				-0.6
102,613	-				+0.3
102,613	-				-1.3
102,705	+				+0.3
102,706	-				-0.7
102,706	-				+0.1
102,710	+				-1.5
102,710	+				+0.1
102,710	+				-1.7
102,710	+				-1.2
102,711	-				+0.6
102,711	-				-0.0
102,711	-				+0.3
102,724	+				+0.3
102,725	-				-0.7
102,725	-				+1.3
102,747	+				+1.4
102,747	+				-0.1
102,784	+				-0.2
102,802	-				-0.7
102,837	+				+1.6
102,837	+				-0.1
102,838	-				+0.1
102,838	-				-0.7
102,838	-				+1.3
102,838	-				+0.6
102,887	+				+0.1
102,933	-				+1.3
102,945	+				+0.9
102,979	+				-0.9
102,997	+				+2.6
102,997	+				-1.7
102,997	+				-0.1
102,997	+				+1.3
102,998	-				+0.9
102,998	-				+2.5
102,998	-				-0.7
103,005	+				+0.6
103,005	+				-0.6
103,019	-				+0.3
103,055	+				+0.8
103,056	-				+1.9
103,076	-				-0.7
103,114	+				+0.1
103,114	+				+0.5
103,114	+				-1.3
103,115	-				-2.0
103,115	-				-0.7
103,120	+				+0.9
103,121	-				-0.5
103,203	-		IAI47_19385	0.17	+0.1
103,214	+		IAI47_19385	0.19	-0.3
103,385	+		IAI47_19385	0.56	+0.7
103,413	+		IAI47_19385	0.62	-0.7