Strain Fitness in Pantoea sp. MT58 around IAI47_18750

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,997,877	-		IAI47_18740	0.62	+0.5
3,997,933	+		IAI47_18740	0.69	+0.5
3,997,933	+		IAI47_18740	0.69	+1.0
3,997,933	+		IAI47_18740	0.69	-0.5
3,997,934	-		IAI47_18740	0.69	+0.1
3,997,934	-		IAI47_18740	0.69	-1.3
3,997,934	-		IAI47_18740	0.69	+1.5
3,997,934	-		IAI47_18740	0.69	+1.1
3,997,967	-		IAI47_18740	0.73	-0.5
3,998,042	+		IAI47_18740	0.82	+0.5
3,998,042	+		IAI47_18740	0.82	-0.8
3,998,042	+		IAI47_18740	0.82	-0.5
3,998,042	+		IAI47_18740	0.82	+0.6
3,998,042	+		IAI47_18740	0.82	-0.7
3,998,042	+		IAI47_18740	0.82	-0.7
3,998,042	+		IAI47_18740	0.82	-1.5
3,998,042	+		IAI47_18740	0.82	-0.1
3,998,042	+		IAI47_18740	0.82	-1.9
3,998,043	-		IAI47_18740	0.82	+0.8
3,998,043	-		IAI47_18740	0.82	+0.6
3,998,043	-		IAI47_18740	0.82	+1.2
3,998,043	-		IAI47_18740	0.82	-0.5
3,998,043	-		IAI47_18740	0.82	+0.3
3,998,043	-		IAI47_18740	0.82	-1.3
3,998,043	-		IAI47_18740	0.82	-1.1
3,998,044	+		IAI47_18740	0.82	+0.2
3,998,044	+		IAI47_18740	0.82	+0.8
3,998,044	+		IAI47_18740	0.82	+3.1
3,998,044	+		IAI47_18740	0.82	+2.9
3,998,044	+		IAI47_18740	0.82	-1.5
3,998,044	+		IAI47_18740	0.82	-1.1
3,998,044	+		IAI47_18740	0.82	-1.0
3,998,044	+		IAI47_18740	0.82	-0.5
3,998,044	+		IAI47_18740	0.82	-0.7
3,998,044	+		IAI47_18740	0.82	+1.5
3,998,044	+		IAI47_18740	0.82	+0.1
3,998,044	+		IAI47_18740	0.82	+0.1
3,998,044	+		IAI47_18740	0.82	+0.5
3,998,044	+		IAI47_18740	0.82	+0.0
3,998,045	-		IAI47_18740	0.82	+0.0
3,998,045	-		IAI47_18740	0.82	+1.5
3,998,045	-		IAI47_18740	0.82	+0.3
3,998,045	-		IAI47_18740	0.82	-1.1
3,998,045	-		IAI47_18740	0.82	-0.9
3,998,045	-		IAI47_18740	0.82	+1.2
3,998,045	-		IAI47_18740	0.82	-0.5
3,998,045	-		IAI47_18740	0.82	-1.5
3,998,045	-		IAI47_18740	0.82	-1.4
3,998,050	+		IAI47_18740	0.83	-0.2
3,998,052	+		IAI47_18740	0.83	-0.5
3,998,052	+		IAI47_18740	0.83	-0.5
3,998,052	+		IAI47_18740	0.83	+0.1
3,998,052	+		IAI47_18740	0.83	-0.5
3,998,052	+		IAI47_18740	0.83	+0.9
3,998,052	+		IAI47_18740	0.83	+0.0
3,998,052	+		IAI47_18740	0.83	+1.0
3,998,052	-		IAI47_18740	0.83	-0.6
3,998,053	-		IAI47_18740	0.83	-1.0
3,998,053	-		IAI47_18740	0.83	+0.5
3,998,149	+				-0.5
3,998,182	+				+0.5
3,998,182	+				+0.3
3,998,183	-				+0.4
3,998,183	-				-0.2
3,998,195	+				-0.0
3,998,195	+				-2.5
3,998,196	-				+0.2
3,998,196	-				+0.3
3,998,208	+				-0.5
3,998,208	+				-0.3
3,998,209	-				+0.5
3,998,209	-				+0.9
3,998,209	-				-0.1
3,998,247	+				-0.3
3,998,247	+				+0.2
3,998,248	-				+1.7
3,998,248	-				-0.8
3,998,248	-				+0.1
3,998,248	-				+0.3
3,998,248	-				-0.3
3,998,271	+				-1.1
3,998,272	-				-0.5
3,998,290	+				+0.1
3,998,290	+				-1.1
3,998,291	-				-0.3
3,998,330	-				-1.1
3,998,330	-				+2.0
3,998,330	-				+0.8
3,998,417	+				-0.2
3,998,465	+				+1.3
3,998,465	+				+1.8
3,998,465	+				+1.0
3,998,473	-				-1.3
3,998,498	+				+0.5
3,998,498	+				+2.0
3,998,499	-				-1.0
3,998,499	-				-0.5
3,998,499	-				-0.3
3,998,507	+				-1.1
3,998,508	-				-0.2
3,998,508	-				-0.6
3,998,508	-				-0.9
3,998,529	-		IAI47_18745	0.10	-0.1
3,998,529	-		IAI47_18745	0.10	+0.5
3,998,567	+		IAI47_18745	0.24	+0.2
3,998,567	+		IAI47_18745	0.24	-0.5
3,998,567	+		IAI47_18745	0.24	-0.3
3,998,567	+		IAI47_18745	0.24	+0.7
3,998,567	+		IAI47_18745	0.24	-1.2
3,998,567	+		IAI47_18745	0.24	-2.3
3,998,567	+		IAI47_18745	0.24	+0.5
3,998,568	-		IAI47_18745	0.25	-0.3
3,998,568	-		IAI47_18745	0.25	+0.5
3,998,578	+		IAI47_18745	0.28	+0.0
3,998,578	+		IAI47_18745	0.28	+0.5
3,998,578	+		IAI47_18745	0.28	-0.5
3,998,578	+		IAI47_18745	0.28	-0.8
3,998,578	+		IAI47_18745	0.28	-0.5
3,998,578	+		IAI47_18745	0.28	-1.1
3,998,578	+		IAI47_18745	0.28	-0.4
3,998,578	+		IAI47_18745	0.28	-1.3
3,998,578	+		IAI47_18745	0.28	-0.2
3,998,578	+		IAI47_18745	0.28	+0.3
3,998,578	+		IAI47_18745	0.28	+0.2
3,998,579	-		IAI47_18745	0.29	+0.1
3,998,579	-		IAI47_18745	0.29	-1.0
3,998,579	-		IAI47_18745	0.29	+0.6
3,998,579	-		IAI47_18745	0.29	+1.5
3,998,579	-		IAI47_18745	0.29	+1.2
3,998,579	-		IAI47_18745	0.29	+1.3
3,998,579	-		IAI47_18745	0.29	+1.9
3,998,579	-		IAI47_18745	0.29	-0.4
3,998,579	-		IAI47_18745	0.29	+0.5
3,998,579	-		IAI47_18745	0.29	-0.7
3,998,582	-		IAI47_18745	0.30	-0.8
3,998,619	+		IAI47_18745	0.44	+0.0
3,998,620	-		IAI47_18745	0.44	-0.3
3,998,705	+		IAI47_18745	0.76	-0.5
3,998,705	+		IAI47_18745	0.76	+0.7
3,998,706	-		IAI47_18745	0.76	-2.3
3,998,706	-		IAI47_18745	0.76	+0.1
3,998,719	-		IAI47_18745	0.81	-1.1
3,998,719	-		IAI47_18745	0.81	-0.5
3,998,719	-		IAI47_18745	0.81	+0.7
3,998,719	-		IAI47_18745	0.81	+0.5
3,998,729	-		IAI47_18745	0.85	+0.5
3,998,729	-		IAI47_18745	0.85	+1.7
3,998,729	-		IAI47_18745	0.85	-1.0
3,998,758	+				+1.6
3,998,758	+				+2.0
3,998,770	+				-0.8
3,998,770	+				+0.0
3,998,770	+				-0.1
3,998,770	+				+0.5
3,998,770	+				+2.3
3,998,770	+				+1.0
3,998,771	-				-0.8
3,998,771	-				+0.5
3,998,771	-				-1.0
3,998,771	-				+0.6
3,998,771	-				-0.2
3,998,771	-				-1.1
3,998,771	-				+0.1
3,998,771	-				+0.0
3,998,778	+				+0.9
3,998,778	+				-1.0
3,998,778	+				+1.1
3,998,778	+				-2.3
3,998,778	+				-0.2
3,998,779	-				+0.5
3,998,779	-				+0.3
3,998,796	+				+0.2
3,998,797	-				+0.0
3,998,797	-				+0.2
3,998,822	+				+0.7
3,998,860	+				+0.6
3,998,860	+				+0.5
3,998,860	+				+0.9
3,998,861	-				+1.5
3,998,861	-				-1.4
3,998,866	+				-1.0
3,998,866	+				+0.6
3,998,866	+				-0.6
3,998,866	+				+1.2
3,998,866	+				-1.1
3,998,867	-				-0.6
3,998,867	-				-0.2
3,998,867	-				-0.0
3,998,867	-				+0.1
3,998,867	-				-0.9
3,998,868	+				-0.8
3,998,869	-				-0.5
3,998,952	+		IAI47_18750	0.10	-0.8
3,998,953	-		IAI47_18750	0.11	-1.0
3,998,953	-		IAI47_18750	0.11	-0.9
3,998,955	-		IAI47_18750	0.11	-1.0
3,999,012	-		IAI47_18750	0.17	-2.3
3,999,059	+		IAI47_18750	0.22	-0.1
3,999,059	+		IAI47_18750	0.22	-1.1
3,999,059	+		IAI47_18750	0.22	+0.9
3,999,059	+		IAI47_18750	0.22	-0.9
3,999,059	+		IAI47_18750	0.22	+2.4
3,999,059	+		IAI47_18750	0.22	+0.5
3,999,059	+		IAI47_18750	0.22	-0.2
3,999,060	-		IAI47_18750	0.22	+2.0
3,999,060	-		IAI47_18750	0.22	-0.1
3,999,060	-		IAI47_18750	0.22	-1.1
3,999,060	-		IAI47_18750	0.22	+0.5
3,999,060	-		IAI47_18750	0.22	-0.3
3,999,060	-		IAI47_18750	0.22	-0.0
3,999,060	-		IAI47_18750	0.22	+0.4
3,999,060	-		IAI47_18750	0.22	-1.1
3,999,139	+		IAI47_18750	0.31	+2.5
3,999,139	+		IAI47_18750	0.31	-0.3
3,999,139	+		IAI47_18750	0.31	+1.5
3,999,140	-		IAI47_18750	0.31	+2.0
3,999,140	-		IAI47_18750	0.31	+0.5
3,999,299	+		IAI47_18750	0.48	-2.0
3,999,299	+		IAI47_18750	0.48	+1.8
3,999,299	+		IAI47_18750	0.48	+0.5
3,999,299	+		IAI47_18750	0.48	+1.2
3,999,319	+		IAI47_18750	0.50	+0.7
3,999,319	+		IAI47_18750	0.50	-1.5
3,999,320	-		IAI47_18750	0.50	-1.3
3,999,332	-		IAI47_18750	0.52	+1.1
3,999,332	-		IAI47_18750	0.52	-0.5
3,999,332	-		IAI47_18750	0.52	-1.2
3,999,354	-		IAI47_18750	0.54	+1.5
3,999,354	-		IAI47_18750	0.54	+0.5
3,999,439	+		IAI47_18750	0.63	+0.4
3,999,440	-		IAI47_18750	0.63	-0.9
3,999,440	-		IAI47_18750	0.63	+0.0
3,999,440	-		IAI47_18750	0.63	+0.1
3,999,440	-		IAI47_18750	0.63	+1.0
3,999,463	+		IAI47_18750	0.66	-0.7
3,999,464	-		IAI47_18750	0.66	-1.0
3,999,464	-		IAI47_18750	0.66	+0.1
3,999,464	-		IAI47_18750	0.66	+0.0
3,999,488	+		IAI47_18750	0.69	-0.4
3,999,489	-		IAI47_18750	0.69	+1.2
3,999,489	-		IAI47_18750	0.69	+0.7
3,999,541	+		IAI47_18750	0.74	+2.0
3,999,542	-		IAI47_18750	0.74	+1.2
3,999,542	-		IAI47_18750	0.74	+0.5
3,999,542	-		IAI47_18750	0.74	+0.6
3,999,542	-		IAI47_18750	0.74	+0.5
3,999,572	+		IAI47_18750	0.78	+0.9
3,999,572	+		IAI47_18750	0.78	-2.7
3,999,572	+		IAI47_18750	0.78	-0.5
3,999,572	+		IAI47_18750	0.78	-0.4
3,999,572	+		IAI47_18750	0.78	+0.3
3,999,573	-		IAI47_18750	0.78	+0.5
3,999,573	-		IAI47_18750	0.78	+0.1
3,999,573	-		IAI47_18750	0.78	+2.0
3,999,635	+		IAI47_18750	0.84	+2.5
3,999,635	+		IAI47_18750	0.84	+0.5
3,999,636	-		IAI47_18750	0.85	-0.3
3,999,636	-		IAI47_18750	0.85	-0.3
3,999,636	-		IAI47_18750	0.85	+0.9
3,999,636	-		IAI47_18750	0.85	+0.8
3,999,636	-		IAI47_18750	0.85	+1.3
3,999,650	+		IAI47_18750	0.86	+0.1
3,999,650	+		IAI47_18750	0.86	-1.4
3,999,651	-		IAI47_18750	0.86	-0.0
3,999,651	-				+0.5
3,999,651	-		IAI47_18750	0.86	-0.8
3,999,705	+				+3.6
3,999,760	+				+1.5
3,999,760	+				+0.0
3,999,760	+				-2.1
3,999,760	+				+0.1
3,999,761	-				+1.5
3,999,761	-				+1.3
3,999,776	+				+1.0
3,999,777	-				+0.8
3,999,777	-				-0.2
3,999,818	+				+0.8
3,999,818	+				+0.0
3,999,818	+				+0.3
3,999,818	+				+0.1
3,999,818	+				-1.4
3,999,818	+				+2.0
3,999,818	+				-0.3
3,999,818	+				+0.5
3,999,819	-				-0.0
3,999,819	-				-1.0
3,999,819	-				+0.5
3,999,819	-				+2.1
3,999,820	+				+0.5
3,999,820	+				+0.3
3,999,820	+				+0.2
3,999,820	+				+1.6
3,999,821	-				+1.3
3,999,821	-				-0.8
3,999,821	-				-2.3
3,999,838	+				+0.0
3,999,838	+				+0.5
3,999,839	-				+0.5
3,999,850	+				-0.1
3,999,886	+		IAI47_18755	0.14	+0.2
3,999,899	+		IAI47_18755	0.16	+0.5
3,999,926	+		IAI47_18755	0.21	-0.0
3,999,926	+		IAI47_18755	0.21	-0.3
3,999,926	+		IAI47_18755	0.21	+0.7
3,999,927	-		IAI47_18755	0.21	+0.3
3,999,927	-		IAI47_18755	0.21	-0.3
3,999,927	-		IAI47_18755	0.21	-0.2
3,999,927	-		IAI47_18755	0.21	+2.5
3,999,967	+		IAI47_18755	0.27	-1.1
3,999,968	-		IAI47_18755	0.27	-0.8
4,000,054	+		IAI47_18755	0.42	-0.1
4,000,054	+		IAI47_18755	0.42	-0.4
4,000,054	+		IAI47_18755	0.42	-1.1
4,000,054	+		IAI47_18755	0.42	-0.2
4,000,189	+		IAI47_18755	0.64	-2.1
4,000,189	+		IAI47_18755	0.64	+0.0
4,000,421	+				-1.1
4,000,421	+				-0.2
4,000,422	-				-1.1
4,000,462	+				-1.6
4,000,462	+				-0.0
4,000,470	+				+0.2
4,000,471	-				+1.2
4,000,471	-				+1.5
4,000,512	+				-0.9
4,000,512	+				-0.5
4,000,512	+				+0.0
4,000,512	+				-1.1
4,000,512	+				-1.1
4,000,512	+				+1.2
4,000,512	+				+1.6
4,000,512	+				+0.5
4,000,512	+				-0.5
4,000,512	+				-0.1
4,000,512	+				+1.5
4,000,512	+				-1.1
4,000,513	-				+3.0
4,000,513	-				+0.2
4,000,513	-				-0.8
4,000,513	-				-0.4
4,000,513	-				-0.4
4,000,513	-				+1.6
4,000,513	-				+2.5
4,000,513	-				+1.5
4,000,513	-				-1.1
4,000,513	-				-0.5
4,000,513	-				+0.1
4,000,513	-				+1.3
4,000,514	+				+0.8
4,000,514	+				-1.1
4,000,514	+				+1.0
4,000,514	+				+0.5
4,000,514	+				-0.5
4,000,514	+				-0.5
4,000,514	+				+0.5
4,000,515	-				+0.5
4,000,515	-				-1.2
4,000,515	-				-0.6
4,000,515	-				-1.1
4,000,515	-				-1.4
4,000,537	+				+1.0
4,000,537	+				+0.8
4,000,537	+				-0.7
4,000,537	+				-0.2
4,000,538	-				-0.3
4,000,538	-				-0.5
4,000,538	-				+0.9
4,000,538	-				-0.1
4,000,538	-				-0.0
4,000,549	+				+0.0
4,000,550	-				+1.9
4,000,550	-				+1.8
4,000,550	-				+0.5
4,000,550	-				-1.5
4,000,570	-				-0.2
4,000,583	+		IAI47_18760	0.12	+0.6
4,000,583	+		IAI47_18760	0.12	-2.1
4,000,583	+		IAI47_18760	0.12	-0.9
4,000,583	+		IAI47_18760	0.12	+2.8
4,000,583	+		IAI47_18760	0.12	-0.2
4,000,583	+		IAI47_18760	0.12	+0.1
4,000,583	+		IAI47_18760	0.12	+0.8
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