Strain Fitness in Pantoea sp. MT58 around IAI47_16435

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,479,608	+				+0.1
3,479,608	+				-0.1
3,479,609	-				+1.0
3,479,633	+				+0.3
3,479,633	+				+0.9
3,479,665	-				+0.3
3,479,666	+				-0.9
3,479,667	-				+0.9
3,479,667	-				+0.5
3,479,671	+				+2.8
3,479,672	-				-0.5
3,479,672	-				-0.4
3,479,688	+				+1.5
3,479,689	-				-1.2
3,479,689	-				+0.8
3,479,689	-				-0.2
3,479,689	-				-1.3
3,479,755	+				-1.5
3,479,756	-				+0.5
3,479,756	-				-0.1
3,479,768	+				+0.9
3,479,769	-				+1.0
3,479,791	+				-1.2
3,479,792	-				-0.6
3,479,834	+				-0.8
3,479,835	-				+0.8
3,479,846	+				+0.9
3,479,875	+				-1.1
3,479,876	-				-0.3
3,479,876	-				+1.0
3,479,892	+				+0.6
3,479,899	+				-0.7
3,479,899	+				+0.6
3,479,900	-				-0.7
3,479,908	+				+0.5
3,479,909	-				-0.3
3,479,943	-				-0.5
3,479,958	+				+0.3
3,479,958	+				-1.0
3,479,958	+				-1.1
3,479,958	+				+0.2
3,479,959	-				+3.0
3,480,000	+				+1.5
3,480,000	+				+1.5
3,480,000	+				-1.1
3,480,001	-				+0.2
3,480,018	+				-0.8
3,480,045	+				-0.5
3,480,045	+				-2.4
3,480,045	+				+0.9
3,480,045	+				-1.1
3,480,045	+				-0.7
3,480,045	+				-0.5
3,480,045	+				-0.0
3,480,045	+				-0.1
3,480,046	-				-0.7
3,480,046	-				-0.9
3,480,046	-				-1.4
3,480,046	-				-0.5
3,480,046	-				+1.0
3,480,046	-				+2.0
3,480,046	-				-2.1
3,480,057	+				+2.5
3,480,076	-				+1.2
3,480,076	-				+1.0
3,480,202	-		IAI47_16430	0.28	+0.5
3,480,207	+		IAI47_16430	0.28	-0.5
3,480,326	+		IAI47_16430	0.50	+0.5
3,480,326	+		IAI47_16430	0.50	-1.4
3,480,326	+		IAI47_16430	0.50	+1.2
3,480,327	-		IAI47_16430	0.50	-0.4
3,480,327	-		IAI47_16430	0.50	-1.3
3,480,333	-		IAI47_16430	0.51	+1.5
3,480,333	-		IAI47_16430	0.51	-0.8
3,480,583	+				+0.6
3,480,583	+				+0.7
3,480,583	+				+0.0
3,480,583	+				-0.3
3,480,583	+				-0.7
3,480,584	-				-1.0
3,480,584	-				-0.6
3,480,584	-				-1.1
3,480,584	-				+0.9
3,480,584	-				+1.5
3,480,584	-				-1.9
3,480,597	+				+0.9
3,480,616	+				-0.4
3,480,624	+				+0.0
3,480,665	+				-0.2
3,480,665	+				+0.1
3,480,666	-				+0.1
3,480,666	-				+0.8
3,480,666	-				+0.5
3,480,666	-				+0.2
3,480,666	-				-0.5
3,480,666	-				-1.0
3,480,666	-				-0.7
3,480,666	-				-0.5
3,480,764	+		IAI47_16435	0.19	+3.9
3,480,835	-		IAI47_16435	0.26	+0.7
3,480,905	+		IAI47_16435	0.33	-0.7
3,480,905	+		IAI47_16435	0.33	+0.6
3,480,905	+		IAI47_16435	0.33	+1.5
3,480,905	+		IAI47_16435	0.33	+0.0
3,480,905	+		IAI47_16435	0.33	-1.1
3,480,905	+		IAI47_16435	0.33	-0.0
3,480,906	-		IAI47_16435	0.33	-0.9
3,480,906	-		IAI47_16435	0.33	+0.5
3,480,906	-		IAI47_16435	0.33	-0.4
3,480,906	-		IAI47_16435	0.33	-0.5
3,480,906	-		IAI47_16435	0.33	+0.5
3,480,906	-		IAI47_16435	0.33	-0.1
3,480,920	+		IAI47_16435	0.35	-0.2
3,480,946	+		IAI47_16435	0.37	+0.5
3,480,946	+		IAI47_16435	0.37	-1.1
3,480,946	+		IAI47_16435	0.37	-0.4
3,480,947	-		IAI47_16435	0.37	-0.8
3,480,982	+		IAI47_16435	0.41	-0.9
3,480,982	+		IAI47_16435	0.41	-1.7
3,480,982	+		IAI47_16435	0.41	+0.9
3,480,982	+		IAI47_16435	0.41	-0.1
3,480,983	-		IAI47_16435	0.41	+1.2
3,480,983	-		IAI47_16435	0.41	-0.2
3,480,983	-		IAI47_16435	0.41	+0.9
3,480,983	-		IAI47_16435	0.41	-0.1
3,480,983	-		IAI47_16435	0.41	-1.0
3,480,983	-		IAI47_16435	0.41	-0.5
3,480,983	-		IAI47_16435	0.41	+2.8
3,481,038	-		IAI47_16435	0.47	+1.4
3,481,180	-		IAI47_16435	0.62	-0.4
3,481,233	+		IAI47_16435	0.67	-0.2
3,481,233	+		IAI47_16435	0.67	-0.3
3,481,233	+		IAI47_16435	0.67	+0.3
3,481,233	+		IAI47_16435	0.67	-0.8
3,481,233	+		IAI47_16435	0.67	+1.7
3,481,233	+		IAI47_16435	0.67	+0.7
3,481,233	+		IAI47_16435	0.67	-0.5
3,481,233	+		IAI47_16435	0.67	+0.5
3,481,233	+		IAI47_16435	0.67	+0.5
3,481,233	+		IAI47_16435	0.67	+0.3
3,481,233	+		IAI47_16435	0.67	-1.3
3,481,233	+		IAI47_16435	0.67	+1.4
3,481,233	+		IAI47_16435	0.67	-0.5
3,481,233	+		IAI47_16435	0.67	-1.3
3,481,233	+		IAI47_16435	0.67	+0.7
3,481,234	-		IAI47_16435	0.67	-0.8
3,481,234	-		IAI47_16435	0.67	+0.8
3,481,234	-		IAI47_16435	0.67	-0.5
3,481,234	-		IAI47_16435	0.67	-1.1
3,481,234	-		IAI47_16435	0.67	+0.3
3,481,234	-		IAI47_16435	0.67	+1.5
3,481,237	+		IAI47_16435	0.67	-1.0
3,481,237	+		IAI47_16435	0.67	-1.8
3,481,237	+		IAI47_16435	0.67	-0.8
3,481,238	-		IAI47_16435	0.68	-0.1
3,481,238	-		IAI47_16435	0.68	+0.9
3,481,238	-		IAI47_16435	0.68	+3.0
3,481,298	+		IAI47_16435	0.74	-1.1
3,481,299	-		IAI47_16435	0.74	-0.4
3,481,323	+		IAI47_16435	0.76	-0.8
3,481,343	+		IAI47_16435	0.78	+0.0
3,481,343	+		IAI47_16435	0.78	-1.4
3,481,344	-		IAI47_16435	0.79	-0.8
3,481,344	-		IAI47_16435	0.79	+1.0
3,481,361	+		IAI47_16435	0.80	+2.0
3,481,362	+		IAI47_16435	0.80	-0.1
3,481,362	-		IAI47_16435	0.80	+0.5
3,481,362	-		IAI47_16435	0.80	+0.3
3,481,364	+		IAI47_16435	0.81	+0.8
3,481,364	+		IAI47_16435	0.81	-0.5
3,481,364	+		IAI47_16435	0.81	-0.1
3,481,364	+		IAI47_16435	0.81	+2.0
3,481,364	+		IAI47_16435	0.81	-0.7
3,481,365	-		IAI47_16435	0.81	+0.3
3,481,365	-		IAI47_16435	0.81	+0.9
3,481,365	-		IAI47_16435	0.81	+0.5
3,481,385	-		IAI47_16435	0.83	+0.0
3,481,385	-		IAI47_16435	0.83	-0.4
3,481,388	+		IAI47_16435	0.83	+1.0
3,481,388	+		IAI47_16435	0.83	-0.4
3,481,388	+		IAI47_16435	0.83	+2.5
3,481,388	+		IAI47_16435	0.83	-1.4
3,481,388	+		IAI47_16435	0.83	+0.5
3,481,388	+		IAI47_16435	0.83	-2.1
3,481,389	-		IAI47_16435	0.83	-0.3
3,481,389	-		IAI47_16435	0.83	+1.0
3,481,389	-		IAI47_16435	0.83	+0.2
3,481,389	-		IAI47_16435	0.83	-0.3
3,481,389	-		IAI47_16435	0.83	-0.7
3,481,389	-		IAI47_16435	0.83	+0.5
3,481,396	+		IAI47_16435	0.84	-0.7
3,481,396	+		IAI47_16435	0.84	-0.5
3,481,396	+		IAI47_16435	0.84	+0.3
3,481,396	+		IAI47_16435	0.84	-1.1
3,481,396	+		IAI47_16435	0.84	-1.0
3,481,396	+		IAI47_16435	0.84	+0.1
3,481,396	+		IAI47_16435	0.84	+0.5
3,481,396	+		IAI47_16435	0.84	+0.9
3,481,396	+		IAI47_16435	0.84	-1.3
3,481,396	+		IAI47_16435	0.84	+1.7
3,481,396	+		IAI47_16435	0.84	+1.0
3,481,396	+		IAI47_16435	0.84	-0.1
3,481,396	+		IAI47_16435	0.84	+1.8
3,481,396	+		IAI47_16435	0.84	+0.5
3,481,397	-		IAI47_16435	0.84	+0.1
3,481,397	-		IAI47_16435	0.84	+0.5
3,481,397	-		IAI47_16435	0.84	+0.1
3,481,397	-		IAI47_16435	0.84	+0.5
3,481,397	-		IAI47_16435	0.84	-2.2
3,481,397	-		IAI47_16435	0.84	-0.8
3,481,397	-		IAI47_16435	0.84	+0.6
3,481,397	-		IAI47_16435	0.84	+1.1
3,481,397	-		IAI47_16435	0.84	-0.9
3,481,397	-		IAI47_16435	0.84	-0.6
3,481,397	-		IAI47_16435	0.84	-0.3
3,481,397	-		IAI47_16435	0.84	+0.1
3,481,397	-		IAI47_16435	0.84	+0.5
3,481,397	-		IAI47_16435	0.84	-0.8
3,481,397	-		IAI47_16435	0.84	+0.8
3,481,397	-		IAI47_16435	0.84	-0.0
3,481,515	-				-0.5
3,481,534	+				+0.1
3,481,535	-				-0.1
3,481,535	-				+0.5
3,481,569	-				+1.2
3,481,580	-				-0.2
3,481,580	-				+0.7
3,481,585	+				+1.3
3,481,585	+				-0.1
3,481,586	-				+0.6
3,481,586	-				+0.2
3,481,586	-				+1.7
3,481,586	-				+1.5
3,481,586	-				+0.3
3,481,635	+				+1.0
3,481,636	-				-1.5
3,481,644	+				-0.8
3,481,644	+				+0.3
3,481,645	-				+1.7
3,481,645	-				+1.2
3,481,647	+				+0.2
3,481,647	+				+2.0
3,481,647	+				-1.4
3,481,648	-				+0.5
3,481,656	+				+1.0
3,481,657	-				-0.1
3,481,682	+				+0.9
3,481,682	+				+1.3
3,481,682	+				-1.7
3,481,682	+				+1.2
3,481,698	+				-1.1
3,481,698	+				-2.4
3,481,699	-				+0.1
3,481,699	-				-0.4
3,481,711	+				-0.9
3,481,712	-				+0.7
3,481,723	+				-1.0
3,481,745	+				+1.0
3,481,770	-				+2.1
3,481,772	+				+0.8
3,481,773	-				+1.3
3,481,775	+				-0.1
3,481,776	-				+1.6
3,481,814	-				+0.1
3,481,831	+				-0.5
3,481,832	-				-2.0
3,481,832	-				-1.1
3,481,836	-				+1.3
3,481,836	-				+0.4
3,481,836	-				-1.0
3,481,843	-				+0.5
3,481,846	+				+1.4
3,481,876	+				-1.0
3,481,973	-				+1.2
3,481,973	-				+2.0
3,482,020	-				+0.0
3,482,084	-				+1.6
3,482,096	-				+0.5
3,482,096	-				-0.5
3,482,109	+				-0.1
3,482,120	-				-0.1
3,482,137	+				+0.6
3,482,137	+				-2.1
3,482,172	-		IAI47_16440	0.12	-0.1
3,482,172	-		IAI47_16440	0.12	-0.7
3,482,172	-		IAI47_16440	0.12	+0.1
3,482,191	+		IAI47_16440	0.14	-0.1
3,482,191	+		IAI47_16440	0.14	-0.9
3,482,191	+		IAI47_16440	0.14	-0.5
3,482,191	+		IAI47_16440	0.14	+1.1
3,482,191	+		IAI47_16440	0.14	-0.9
3,482,191	+		IAI47_16440	0.14	-0.3
3,482,192	-		IAI47_16440	0.14	+0.2
3,482,192	-		IAI47_16440	0.14	+1.5
3,482,192	-		IAI47_16440	0.14	-1.0
3,482,192	-		IAI47_16440	0.14	+1.8
3,482,315	-		IAI47_16440	0.26	+2.5
3,482,341	+		IAI47_16440	0.28	-0.3
3,482,341	+		IAI47_16440	0.28	-0.4
3,482,383	+		IAI47_16440	0.32	+0.5
3,482,383	+		IAI47_16440	0.32	+0.7
3,482,383	+		IAI47_16440	0.32	-0.7
3,482,383	+		IAI47_16440	0.32	-0.9
3,482,384	-		IAI47_16440	0.33	+0.5
3,482,384	-		IAI47_16440	0.33	-0.1
3,482,384	-		IAI47_16440	0.33	-2.1
3,482,384	-		IAI47_16440	0.33	-0.1
3,482,410	+		IAI47_16440	0.35	+1.1
3,482,423	-		IAI47_16440	0.36	-0.3
3,482,447	+		IAI47_16440	0.39	+0.2
3,482,448	-		IAI47_16440	0.39	-1.7
3,482,543	+		IAI47_16440	0.48	+0.9
3,482,543	+		IAI47_16440	0.48	+0.5
3,482,544	-		IAI47_16440	0.48	+0.5
3,482,547	-		IAI47_16440	0.49	+0.7