Strain Fitness in Pantoea sp. MT58 around IAI47_16315

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,457,556	-		IAI47_16310	0.25	+0.8
3,457,556	-		IAI47_16310	0.25	+0.0
3,457,556	-		IAI47_16310	0.25	-1.4
3,457,556	-		IAI47_16310	0.25	-0.6
3,457,556	-		IAI47_16310	0.25	+0.1
3,457,556	-		IAI47_16310	0.25	+0.7
3,457,556	-		IAI47_16310	0.25	+0.3
3,457,556	-		IAI47_16310	0.25	+1.3
3,457,556	-		IAI47_16310	0.25	-0.4
3,457,669	+		IAI47_16310	0.34	-0.9
3,457,669	+		IAI47_16310	0.34	-1.0
3,457,670	-		IAI47_16310	0.34	+2.7
3,457,670	-		IAI47_16310	0.34	+0.4
3,457,670	-		IAI47_16310	0.34	+0.4
3,457,670	-		IAI47_16310	0.34	+0.6
3,457,676	+		IAI47_16310	0.34	+3.0
3,457,676	+		IAI47_16310	0.34	-0.2
3,457,677	-		IAI47_16310	0.34	+1.6
3,457,677	-		IAI47_16310	0.34	+1.7
3,457,677	-		IAI47_16310	0.34	+1.4
3,457,682	+		IAI47_16310	0.35	-0.2
3,457,683	-		IAI47_16310	0.35	+0.8
3,457,733	+		IAI47_16310	0.39	+1.4
3,457,733	+		IAI47_16310	0.39	+1.8
3,457,734	-		IAI47_16310	0.39	-1.1
3,457,765	+		IAI47_16310	0.41	-1.1
3,457,765	+		IAI47_16310	0.41	-0.7
3,457,765	+		IAI47_16310	0.41	-0.1
3,457,765	+		IAI47_16310	0.41	+0.2
3,457,765	+		IAI47_16310	0.41	+0.4
3,457,765	+		IAI47_16310	0.41	+3.4
3,457,794	-		IAI47_16310	0.43	+0.7
3,457,805	+		IAI47_16310	0.44	-0.1
3,457,856	+		IAI47_16310	0.48	-0.4
3,457,856	+		IAI47_16310	0.48	+1.1
3,457,856	+		IAI47_16310	0.48	-0.6
3,457,856	+		IAI47_16310	0.48	-2.1
3,457,856	+		IAI47_16310	0.48	+1.4
3,457,856	+		IAI47_16310	0.48	+0.2
3,457,857	-		IAI47_16310	0.48	+0.7
3,457,857	-		IAI47_16310	0.48	+0.4
3,457,857	-		IAI47_16310	0.48	+0.4
3,457,857	-		IAI47_16310	0.48	+0.8
3,457,857	-		IAI47_16310	0.48	+0.9
3,457,857	-		IAI47_16310	0.48	+0.6
3,457,857	-		IAI47_16310	0.48	+1.0
3,457,857	-		IAI47_16310	0.48	+0.4
3,457,857	-		IAI47_16310	0.48	+0.1
3,457,857	-		IAI47_16310	0.48	+0.4
3,457,857	-		IAI47_16310	0.48	+0.6
3,457,857	-		IAI47_16310	0.48	-0.7
3,457,857	-		IAI47_16310	0.48	-0.8
3,457,857	-		IAI47_16310	0.48	+1.4
3,457,892	+		IAI47_16310	0.51	+0.6
3,457,892	+		IAI47_16310	0.51	-0.9
3,457,892	+		IAI47_16310	0.51	+0.4
3,457,892	+		IAI47_16310	0.51	+1.1
3,457,892	+		IAI47_16310	0.51	-0.3
3,457,892	+		IAI47_16310	0.51	-1.1
3,457,892	+		IAI47_16310	0.51	+0.4
3,457,892	+		IAI47_16310	0.51	+0.4
3,457,893	-		IAI47_16310	0.51	-0.6
3,457,893	-		IAI47_16310	0.51	+1.5
3,457,893	-		IAI47_16310	0.51	+0.9
3,457,930	+		IAI47_16310	0.53	+0.4
3,457,930	+		IAI47_16310	0.53	-1.1
3,457,931	-		IAI47_16310	0.54	-0.4
3,457,931	-		IAI47_16310	0.54	+0.6
3,457,931	-		IAI47_16310	0.54	+2.2
3,457,931	-		IAI47_16310	0.54	+0.4
3,457,931	-		IAI47_16310	0.54	-0.6
3,457,936	+		IAI47_16310	0.54	+0.9
3,457,936	+		IAI47_16310	0.54	+0.8
3,457,936	+		IAI47_16310	0.54	-2.6
3,457,937	-		IAI47_16310	0.54	+1.0
3,457,937	-		IAI47_16310	0.54	+0.7
3,457,937	-		IAI47_16310	0.54	-1.1
3,458,044	+		IAI47_16310	0.62	+0.7
3,458,044	+		IAI47_16310	0.62	-1.6
3,458,044	+		IAI47_16310	0.62	+0.0
3,458,044	+		IAI47_16310	0.62	-0.5
3,458,044	+		IAI47_16310	0.62	-0.6
3,458,044	+		IAI47_16310	0.62	-0.6
3,458,044	+		IAI47_16310	0.62	+2.2
3,458,044	+		IAI47_16310	0.62	+0.2
3,458,045	-		IAI47_16310	0.62	+0.6
3,458,045	-		IAI47_16310	0.62	+1.2
3,458,045	-		IAI47_16310	0.62	-0.9
3,458,048	+		IAI47_16310	0.62	+0.7
3,458,048	+		IAI47_16310	0.62	+0.1
3,458,049	-		IAI47_16310	0.62	-0.9
3,458,083	+		IAI47_16310	0.65	-0.4
3,458,083	+		IAI47_16310	0.65	-0.6
3,458,084	-		IAI47_16310	0.65	+1.4
3,458,146	+		IAI47_16310	0.70	-0.1
3,458,146	+		IAI47_16310	0.70	+1.0
3,458,146	+		IAI47_16310	0.70	-0.8
3,458,146	+		IAI47_16310	0.70	+1.1
3,458,147	-		IAI47_16310	0.70	+0.9
3,458,147	-		IAI47_16310	0.70	+0.0
3,458,218	+		IAI47_16310	0.75	-0.0
3,458,218	+		IAI47_16310	0.75	+0.6
3,458,218	+		IAI47_16310	0.75	+1.1
3,458,218	+		IAI47_16310	0.75	-2.1
3,458,218	+		IAI47_16310	0.75	-0.9
3,458,218	+		IAI47_16310	0.75	-1.5
3,458,218	+		IAI47_16310	0.75	+1.4
3,458,218	+		IAI47_16310	0.75	+0.6
3,458,242	+		IAI47_16310	0.77	-0.6
3,458,242	+		IAI47_16310	0.77	+0.7
3,458,243	-		IAI47_16310	0.77	-0.1
3,458,243	-		IAI47_16310	0.77	-0.2
3,458,243	-		IAI47_16310	0.77	+0.8
3,458,243	-		IAI47_16310	0.77	+2.8
3,458,252	+		IAI47_16310	0.78	+1.8
3,458,266	+		IAI47_16310	0.79	+4.4
3,458,266	+		IAI47_16310	0.79	+0.3
3,458,266	+		IAI47_16310	0.79	+0.4
3,458,267	-		IAI47_16310	0.79	+0.8
3,458,285	+		IAI47_16310	0.80	-1.0
3,458,285	+		IAI47_16310	0.80	+2.0
3,458,286	-		IAI47_16310	0.80	-1.1
3,458,286	-		IAI47_16310	0.80	+0.4
3,458,286	-		IAI47_16310	0.80	+1.8
3,458,286	-		IAI47_16310	0.80	+0.2
3,458,286	-		IAI47_16310	0.80	+0.3
3,458,286	-		IAI47_16310	0.80	-1.4
3,458,299	+		IAI47_16310	0.81	-1.1
3,458,299	+		IAI47_16310	0.81	-0.6
3,458,300	-		IAI47_16310	0.81	+0.6
3,458,300	-		IAI47_16310	0.81	-0.3
3,458,300	-		IAI47_16310	0.81	+1.2
3,458,300	-		IAI47_16310	0.81	-0.3
3,458,300	-		IAI47_16310	0.81	+0.8
3,458,356	+		IAI47_16310	0.86	-0.3
3,458,356	+		IAI47_16310	0.86	+1.2
3,458,357	-		IAI47_16310	0.86	+1.0
3,458,420	+				+0.2
3,458,512	+				+2.8
3,458,513	-				-0.6
3,458,513	-				+1.6
3,458,513	-				+1.4
3,458,546	+				+0.4
3,458,546	+				-0.1
3,458,546	+				+0.4
3,458,546	+				-1.1
3,458,546	+				+0.6
3,458,547	-				+0.9
3,458,547	-				-1.1
3,458,547	-				+0.6
3,458,547	-				+0.4
3,458,561	+				-1.7
3,458,561	+				-0.4
3,458,562	-				-0.1
3,458,562	-				+0.3
3,458,599	+				-1.0
3,458,696	-		IAI47_16315	0.15	+0.7
3,458,816	+		IAI47_16315	0.28	+0.1
3,458,816	+		IAI47_16315	0.28	-1.1
3,458,816	+		IAI47_16315	0.28	+0.7
3,458,817	-		IAI47_16315	0.28	-0.8
3,458,817	-		IAI47_16315	0.28	+1.4
3,458,817	-		IAI47_16315	0.28	+2.6
3,458,817	-		IAI47_16315	0.28	-0.8
3,458,817	-		IAI47_16315	0.28	-0.4
3,458,832	-		IAI47_16315	0.30	+0.4
3,458,832	-		IAI47_16315	0.30	+0.7
3,458,832	-		IAI47_16315	0.30	+0.8
3,458,930	+		IAI47_16315	0.41	-2.7
3,458,931	-		IAI47_16315	0.41	+0.2
3,458,953	+		IAI47_16315	0.43	+0.0
3,458,953	+		IAI47_16315	0.43	+1.2
3,458,953	+		IAI47_16315	0.43	-1.1
3,458,953	+		IAI47_16315	0.43	+0.9
3,458,953	+		IAI47_16315	0.43	-0.8
3,458,954	-		IAI47_16315	0.43	+0.2
3,459,034	+		IAI47_16315	0.52	-1.4
3,459,034	+		IAI47_16315	0.52	+0.5
3,459,034	+		IAI47_16315	0.52	+0.6
3,459,034	+		IAI47_16315	0.52	-0.1
3,459,034	+		IAI47_16315	0.52	+0.0
3,459,034	+		IAI47_16315	0.52	+0.6
3,459,034	+		IAI47_16315	0.52	+1.4
3,459,034	+		IAI47_16315	0.52	+0.4
3,459,035	-		IAI47_16315	0.52	+2.4
3,459,035	-		IAI47_16315	0.52	-0.4
3,459,035	-		IAI47_16315	0.52	-1.1
3,459,035	-		IAI47_16315	0.52	-0.0
3,459,037	+		IAI47_16315	0.52	+1.3
3,459,425	+				-0.6
3,459,425	+				-0.1
3,459,425	+				+0.1
3,459,426	-				+0.1
3,459,426	-				-0.8
3,459,426	-				-0.3
3,459,427	+				+1.1
3,459,427	+				+1.4
3,459,427	+				-0.3
3,459,427	+				-1.0
3,459,427	+				+0.3
3,459,427	+				-0.7
3,459,428	-				-0.1
3,459,428	-				+3.4
3,459,428	-				+0.2
3,459,428	-				+0.4
3,459,428	-				+0.4
3,459,428	-				+1.4
3,459,428	-				+0.4
3,459,428	-				+1.0
3,459,428	-				+0.9
3,459,428	-				-0.6
3,459,428	-				+1.0
3,459,431	+				+1.4
3,459,431	+				-1.6
3,459,431	+				-0.8
3,459,431	+				-0.1
3,459,431	+				+0.4
3,459,432	-				-0.6
3,459,432	-				-0.9
3,459,432	-				-0.9
3,459,432	-				+0.7
3,459,490	+				+1.5
3,459,587	+				-0.8
3,459,587	+				-0.9
3,459,587	+				-0.3
3,459,587	+				+1.8
3,459,587	+				+0.7
3,459,587	+				+1.1
3,459,587	+				+1.0
3,459,587	+				-0.5
3,459,587	+				+0.0
3,459,587	+				-1.6
3,459,587	+				+0.4
3,459,587	+				+2.3
3,459,587	+				+2.4
3,459,587	+				-1.9
3,459,587	+				-0.1
3,459,587	+				+0.1
3,459,587	+				-0.3
3,459,587	+				-1.1
3,459,587	+				+1.2
3,459,587	+				+1.0
3,459,587	+				-0.6
3,459,587	+				-0.4
3,459,587	+				-0.1
3,459,587	+				-0.6
3,459,587	+				-0.8
3,459,587	+				+0.5
3,459,587	+				+1.2
3,459,587	+				-0.2
3,459,587	+				-0.1
3,459,587	+				-0.6
3,459,587	+				+2.6
3,459,587	+				+0.2
3,459,587	+				+0.7
3,459,588	-				+1.3
3,459,588	-				+0.4
3,459,588	-				+1.8
3,459,588	-				-1.6
3,459,588	-				+3.2
3,459,588	-				+0.6
3,459,588	-				+1.0
3,459,588	-				-1.2
3,459,588	-				+0.4
3,459,588	-				+2.7
3,459,588	-				+0.6
3,459,588	-				+2.3
3,459,588	-				-1.1
3,459,588	-				+1.1
3,459,588	-				-0.4
3,459,588	-				+0.3
3,459,588	-				-0.2
3,459,588	-				+0.0
3,459,588	-				+2.1
3,459,588	-				+1.4
3,459,588	-				+1.0
3,459,588	-				-0.1
3,459,588	-				-0.1
3,459,588	-				+0.3
3,459,588	-				+1.6
3,459,588	-				+0.7
3,459,588	-				+0.7
3,459,588	-				+0.4
3,459,624	+				-0.3
3,459,687	-				-1.4
3,459,770	+				-0.6
3,459,770	+				+0.4
3,459,794	-				+0.6
3,459,794	-				+1.8
3,459,834	+				-0.6
3,459,834	+				-0.9
3,459,838	+				+0.4
3,459,838	+				+0.5
3,459,838	+				-0.3
3,459,838	+				+0.9
3,459,838	+				-0.9
3,459,839	-				+2.8
3,459,839	-				+0.9
3,459,900	+				+0.7
3,459,901	-				-0.6
3,459,978	-		IAI47_16320	0.16	+1.4
3,460,004	+		IAI47_16320	0.20	-0.1
3,460,005	-		IAI47_16320	0.20	+1.9
3,460,015	+		IAI47_16320	0.21	+0.4
3,460,015	+		IAI47_16320	0.21	+1.4
3,460,042	-		IAI47_16320	0.25	+0.3
3,460,051	+		IAI47_16320	0.26	+2.0
3,460,161	+		IAI47_16320	0.40	+0.0
3,460,162	-		IAI47_16320	0.40	+1.7
3,460,171	+		IAI47_16320	0.42	+0.0
3,460,171	+		IAI47_16320	0.42	+0.0
3,460,172	-		IAI47_16320	0.42	+3.9
3,460,173	+		IAI47_16320	0.42	+0.4
3,460,173	+		IAI47_16320	0.42	+0.4
3,460,173	+		IAI47_16320	0.42	+2.5
3,460,173	+		IAI47_16320	0.42	+0.4
3,460,173	+		IAI47_16320	0.42	+1.9
3,460,173	+		IAI47_16320	0.42	-0.6
3,460,174	-		IAI47_16320	0.42	+0.2
3,460,224	+		IAI47_16320	0.48	+1.6
3,460,224	+		IAI47_16320	0.48	+1.0
3,460,225	-		IAI47_16320	0.49	+1.9
3,460,263	+		IAI47_16320	0.54	+1.3
3,460,264	-		IAI47_16320	0.54	+0.4
3,460,264	-		IAI47_16320	0.54	+1.4
3,460,269	+		IAI47_16320	0.54	+1.4
3,460,270	-		IAI47_16320	0.55	+0.3
3,460,270	-		IAI47_16320	0.55	-0.4
3,460,311	+		IAI47_16320	0.60	-1.7
3,460,311	+		IAI47_16320	0.60	+1.4
3,460,311	+		IAI47_16320	0.60	+2.2
3,460,312	-		IAI47_16320	0.60	-1.6
3,460,325	+		IAI47_16320	0.62	+1.2
3,460,408	+		IAI47_16320	0.73	+0.6
3,460,408	+		IAI47_16320	0.73	+2.9
3,460,408	+		IAI47_16320	0.73	+2.6
3,460,408	+		IAI47_16320	0.73	+1.0
3,460,408	+		IAI47_16320	0.73	+0.2
3,460,408	+		IAI47_16320	0.73	+0.4
3,460,408	+		IAI47_16320	0.73	-0.0
3,460,408	+		IAI47_16320	0.73	+0.5
3,460,408	+		IAI47_16320	0.73	+3.4