Strain Fitness in Pantoea sp. MT58 around IAI47_15385

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,240,017	+				+0.4
3,240,017	+				+0.9
3,240,035	+				+0.8
3,240,108	+				+1.0
3,240,109	-				+0.8
3,240,705	+				-0.2
3,240,705	+				+2.0
3,240,707	+				-0.8
3,240,707	+				+0.0
3,240,707	+				-0.3
3,240,708	-				-0.2
3,240,746	+				-0.7
3,240,746	+				+1.0
3,240,746	+				-0.2
3,240,781	+				+1.2
3,240,781	+				-1.2
3,240,783	+				-0.7
3,240,828	+				+0.0
3,240,833	+				-2.4
3,240,833	+				+0.8
3,240,838	-				-1.9
3,240,838	-				-0.2
3,240,838	-				-1.7
3,240,841	-				-1.6
3,240,846	-				-1.9
3,240,853	-				+3.0
3,240,897	+				+0.4
3,240,897	+				+0.7
3,240,946	+				+0.2
3,240,946	+				+1.4
3,240,947	-				-1.2
3,240,975	+		IAI47_15385	0.12	-1.2
3,240,975	+		IAI47_15385	0.12	-1.4
3,240,982	-		IAI47_15385	0.13	-0.5
3,240,982	-		IAI47_15385	0.13	-0.6
3,240,982	-		IAI47_15385	0.13	+0.2
3,240,999	+		IAI47_15385	0.15	-1.2
3,241,031	+		IAI47_15385	0.18	-0.8
3,241,052	+		IAI47_15385	0.20	-1.2
3,241,052	+		IAI47_15385	0.20	-1.0
3,241,053	-		IAI47_15385	0.20	+0.7
3,241,076	+		IAI47_15385	0.22	-1.9
3,241,242	+		IAI47_15385	0.38	+1.4
3,241,242	+		IAI47_15385	0.38	+0.3
3,241,243	-		IAI47_15385	0.38	+0.4
3,241,318	-		IAI47_15385	0.46	-0.2
3,241,437	+		IAI47_15385	0.57	-0.5
3,241,437	+		IAI47_15385	0.57	-0.8
3,241,438	-		IAI47_15385	0.57	-1.6
3,241,515	+		IAI47_15385	0.65	+0.0
3,241,515	+		IAI47_15385	0.65	-1.1
3,241,516	-		IAI47_15385	0.65	-1.4
3,241,516	-		IAI47_15385	0.65	-1.5
3,241,542	+		IAI47_15385	0.67	-0.6
3,241,542	+		IAI47_15385	0.67	-0.5
3,241,543	-		IAI47_15385	0.67	-0.7
3,241,543	-		IAI47_15385	0.67	-0.9
3,241,543	-		IAI47_15385	0.67	-1.2
3,241,566	+		IAI47_15385	0.70	+1.1
3,241,567	-		IAI47_15385	0.70	+1.4
3,241,567	-		IAI47_15385	0.70	-0.5
3,241,567	-		IAI47_15385	0.70	-1.6
3,241,603	+		IAI47_15385	0.73	+0.4
3,241,603	+		IAI47_15385	0.73	+0.1
3,241,603	+		IAI47_15385	0.73	-3.2
3,241,604	-		IAI47_15385	0.73	-2.0
3,241,604	-		IAI47_15385	0.73	+0.3
3,241,639	-		IAI47_15385	0.77	+0.4
3,241,671	+		IAI47_15385	0.80	+0.7
3,241,714	+		IAI47_15385	0.84	-0.2
3,241,714	+		IAI47_15385	0.84	+1.4
3,241,715	-		IAI47_15385	0.84	-1.3
3,241,715	-		IAI47_15385	0.84	+0.0
3,241,715	-		IAI47_15385	0.84	-0.8
3,241,725	+		IAI47_15385	0.85	+1.6
3,241,726	-		IAI47_15385	0.85	+0.2
3,241,726	-		IAI47_15385	0.85	+2.2
3,241,734	+		IAI47_15385	0.86	-1.5
3,241,734	+		IAI47_15385	0.86	-0.6
3,241,734	+		IAI47_15385	0.86	-0.5
3,241,735	-		IAI47_15385	0.86	+0.4
3,241,735	-		IAI47_15385	0.86	+0.3
3,241,735	-		IAI47_15385	0.86	+0.4
3,241,735	-		IAI47_15385	0.86	-0.2
3,241,753	+		IAI47_15385	0.88	+0.1
3,241,754	-		IAI47_15385	0.88	-1.6
3,241,779	+				-0.1
3,241,779	+				-0.3
3,241,779	+				-1.6
3,241,779	+				-1.0
3,241,779	+				+0.2
3,241,779	+				+0.0
3,241,779	+				-1.1
3,241,780	-				+0.0
3,241,780	-				+0.0
3,241,780	-				-1.2
3,241,780	-				-1.4
3,241,856	+				-1.2
3,241,857	-				-0.6
3,241,865	+				+0.1
3,241,865	+				-2.5
3,241,865	+				+0.4
3,241,865	+				+0.4
3,241,865	+				-1.7
3,241,865	+				-3.2
3,241,865	+				-1.2
3,241,865	+				-1.4
3,241,865	+				+0.8
3,241,865	+				+0.4
3,241,865	+				+0.2
3,241,865	+				-0.9
3,241,865	+				-1.2
3,241,865	+				-0.3
3,241,865	+				+0.1
3,241,865	+				+0.3
3,241,866	-				-2.2
3,241,866	-				-0.6
3,241,866	-				+0.1
3,241,866	-				-1.2
3,241,866	-				+0.8
3,241,866	-				+0.4
3,241,866	-				-0.6
3,241,866	-				+0.1
3,241,870	+				+0.7
3,241,870	+				+0.0
3,241,870	+				+0.6
3,241,870	+				-0.1
3,241,870	+				+0.0
3,241,870	+				-0.3
3,241,870	+				+0.4
3,241,871	-				-0.5
3,241,871	-				-2.3
3,241,871	-				-1.4
3,241,871	-				-1.9
3,241,871	-				+0.7
3,241,985	+		IAI47_15390	0.17	-0.4
3,241,985	+		IAI47_15390	0.17	-1.0
3,241,985	+		IAI47_15390	0.17	-0.9
3,241,985	+		IAI47_15390	0.17	-1.6
3,241,985	+		IAI47_15390	0.17	-1.0
3,241,985	+		IAI47_15390	0.17	+2.1
3,241,986	-		IAI47_15390	0.18	+0.2
3,241,986	-		IAI47_15390	0.18	+0.3
3,241,986	-		IAI47_15390	0.18	-2.0
3,241,986	-		IAI47_15390	0.18	-2.4
3,241,986	-		IAI47_15390	0.18	-1.3
3,241,986	-		IAI47_15390	0.18	-2.4
3,241,986	-		IAI47_15390	0.18	-1.6
3,241,986	-		IAI47_15390	0.18	-1.9
3,241,986	-		IAI47_15390	0.18	-0.7
3,241,986	-		IAI47_15390	0.18	-0.9
3,242,048	+		IAI47_15390	0.27	-1.9
3,242,049	+		IAI47_15390	0.27	+0.3
3,242,049	+		IAI47_15390	0.27	+0.4
3,242,050	-		IAI47_15390	0.27	+0.4
3,242,053	+		IAI47_15390	0.28	-1.2
3,242,053	+		IAI47_15390	0.28	-0.4
3,242,054	-		IAI47_15390	0.28	-0.6
3,242,077	+		IAI47_15390	0.31	-1.7
3,242,078	-		IAI47_15390	0.32	-1.2
3,242,105	-		IAI47_15390	0.36	-1.0
3,242,147	-		IAI47_15390	0.42	-0.9
3,242,179	+		IAI47_15390	0.47	-0.5
3,242,188	+		IAI47_15390	0.48	+1.4
3,242,189	-		IAI47_15390	0.49	-1.6
3,242,275	+		IAI47_15390	0.62	-1.2
3,242,275	+		IAI47_15390	0.62	-0.9
3,242,335	+		IAI47_15390	0.71	-0.4
3,242,335	+		IAI47_15390	0.71	-1.7
3,242,335	+		IAI47_15390	0.71	-2.8
3,242,335	+		IAI47_15390	0.71	-0.6
3,242,335	+		IAI47_15390	0.71	-1.2
3,242,336	-		IAI47_15390	0.71	-1.2
3,242,336	-		IAI47_15390	0.71	+0.4
3,242,405	+		IAI47_15390	0.82	-0.8
3,242,405	+		IAI47_15390	0.82	+0.2
3,242,405	+		IAI47_15390	0.82	+1.4
3,242,405	+		IAI47_15390	0.82	-0.2
3,242,406	-		IAI47_15390	0.82	-1.4
3,242,406	-		IAI47_15390	0.82	-1.7
3,242,406	-		IAI47_15390	0.82	-0.2
3,242,406	-		IAI47_15390	0.82	-0.2
3,242,406	-		IAI47_15390	0.82	-0.6
3,242,411	+		IAI47_15390	0.83	-0.6
3,242,411	+		IAI47_15390	0.83	+0.4
3,242,411	+		IAI47_15390	0.83	-0.6
3,242,411	+		IAI47_15390	0.83	+0.7
3,242,411	+		IAI47_15390	0.83	+0.3
3,242,411	+		IAI47_15390	0.83	+1.1
3,242,412	-		IAI47_15390	0.83	-1.7
3,242,412	-		IAI47_15390	0.83	+1.1
3,242,412	-		IAI47_15390	0.83	+0.4
3,242,412	-		IAI47_15390	0.83	+1.2
3,242,412	-		IAI47_15390	0.83	-0.4
3,242,412	-		IAI47_15390	0.83	+0.2
3,242,412	-		IAI47_15390	0.83	-0.4
3,242,412	-		IAI47_15390	0.83	+2.0
3,242,412	-		IAI47_15390	0.83	-1.3
3,242,412	-		IAI47_15390	0.83	-1.0
3,242,412	-		IAI47_15390	0.83	-0.3
3,242,412	-		IAI47_15390	0.83	-0.8
3,242,412	-		IAI47_15390	0.83	+1.4
3,242,413	+		IAI47_15390	0.83	-1.4
3,242,414	-		IAI47_15390	0.83	-2.4
3,242,414	-		IAI47_15390	0.83	-2.2
3,242,421	-		IAI47_15390	0.84	+0.4
3,242,421	-		IAI47_15390	0.84	+0.4
3,242,421	-		IAI47_15390	0.84	-0.0
3,242,422	+		IAI47_15390	0.84	-1.2
3,242,422	+		IAI47_15390	0.84	-1.3
3,242,422	+		IAI47_15390	0.84	-1.4
3,242,422	+		IAI47_15390	0.84	-2.3
3,242,422	+		IAI47_15390	0.84	-0.7
3,242,423	-		IAI47_15390	0.84	-1.2
3,242,423	-		IAI47_15390	0.84	+1.1
3,242,423	-		IAI47_15390	0.84	-0.6
3,242,423	-		IAI47_15390	0.84	-1.3
3,242,423	-		IAI47_15390	0.84	-1.6
3,242,423	-		IAI47_15390	0.84	-2.0
3,242,423	-		IAI47_15390	0.84	-0.6
3,242,440	+		IAI47_15390	0.87	-1.4
3,242,440	+		IAI47_15390	0.87	-0.9
3,242,441	-		IAI47_15390	0.87	+2.0
3,242,441	-		IAI47_15390	0.87	-0.6
3,242,445	+		IAI47_15390	0.88	+0.4
3,242,445	+		IAI47_15390	0.88	+0.4
3,242,445	+		IAI47_15390	0.88	+0.4
3,242,445	+		IAI47_15390	0.88	-0.8
3,242,445	+		IAI47_15390	0.88	-0.2
3,242,445	+		IAI47_15390	0.88	+1.4
3,242,446	-		IAI47_15390	0.88	+0.0
3,242,446	-		IAI47_15390	0.88	+1.0
3,242,446	-		IAI47_15390	0.88	-0.6
3,242,446	-		IAI47_15390	0.88	-2.6
3,242,448	+		IAI47_15390	0.88	-3.4
3,242,448	+		IAI47_15390	0.88	-1.0
3,242,448	+		IAI47_15390	0.88	-0.6
3,242,448	+		IAI47_15390	0.88	-1.4
3,242,448	+		IAI47_15390	0.88	+0.2
3,242,449	-		IAI47_15390	0.88	-3.2
3,242,449	-		IAI47_15390	0.88	-0.6
3,242,449	-		IAI47_15390	0.88	-1.6
3,242,449	-		IAI47_15390	0.88	-2.0
3,242,458	-		IAI47_15390	0.90	-2.6
3,242,466	+				-1.6
3,242,466	+				-1.2
3,242,466	+				+0.7
3,242,467	-				-0.7
3,242,467	-				+1.1
3,242,467	-				-2.7
3,242,471	+				-0.1
3,242,471	+				-1.0
3,242,471	+				-0.6
3,242,471	+				+0.0
3,242,472	-				+0.1
3,242,472	-				-1.2
3,242,472	-				-0.0
3,242,472	-				+0.9
3,242,518	+				-1.0
3,242,522	+				-1.2
3,242,522	+				+1.6
3,242,522	+				+1.0
3,242,522	+				+1.4
3,242,522	+				+0.5
3,242,522	+				+1.2
3,242,522	+				+1.8
3,242,522	+				+0.1
3,242,522	+				+0.4
3,242,522	+				+0.4
3,242,522	+				+1.3
3,242,522	+				-1.6
3,242,522	+				-1.0
3,242,522	+				+0.9
3,242,522	+				-0.3
3,242,522	+				+0.0
3,242,523	-				+0.4
3,242,523	-				-1.5
3,242,523	-				-0.3
3,242,523	-				+2.2
3,242,523	-				-1.0
3,242,523	-				-2.0
3,242,523	-				-0.6
3,242,523	-				-1.6
3,242,523	-				-1.2
3,242,524	-				+1.1
3,242,528	+				-2.4
3,242,529	+				+2.1
3,242,529	+				+0.8
3,242,529	+				-0.4
3,242,529	+				+1.4
3,242,530	-				-0.5
3,242,537	+				+1.7
3,242,537	+				-0.4
3,242,538	-				+0.0
3,242,538	-				-0.2
3,242,538	-				-0.4
3,242,538	-				-0.2
3,242,540	+				-0.3
3,242,540	+				+0.3
3,242,540	+				+0.6
3,242,541	-				+2.0
3,242,554	+				+0.3
3,242,554	+				-1.9
3,242,554	+				-1.2
3,242,554	+				+0.2
3,242,554	+				-0.7
3,242,554	+				+1.4
3,242,555	-				-0.7
3,242,555	-				-0.7
3,242,645	-		IAI47_15395	0.11	+1.4
3,242,645	-		IAI47_15395	0.11	-0.6
3,242,719	+		IAI47_15395	0.20	+0.5
3,242,719	+		IAI47_15395	0.20	+2.0
3,242,719	+				+1.6
3,242,719	+		IAI47_15395	0.20	+1.0
3,242,719	+		IAI47_15395	0.20	-0.6
3,242,719	+		IAI47_15395	0.20	-0.2
3,242,719	+		IAI47_15395	0.20	+1.4
3,242,719	+		IAI47_15395	0.20	+1.2
3,242,719	+		IAI47_15395	0.20	-0.3
3,242,719	+		IAI47_15395	0.20	+0.2
3,242,719	+		IAI47_15395	0.20	+1.5
3,242,720	-		IAI47_15395	0.20	-0.8
3,242,720	-		IAI47_15395	0.20	-1.1
3,242,720	-		IAI47_15395	0.20	-1.2
3,242,720	-		IAI47_15395	0.20	+1.4
3,242,720	-		IAI47_15395	0.20	-0.9
3,242,720	-		IAI47_15395	0.20	-0.4
3,242,720	-		IAI47_15395	0.20	+1.5
3,242,720	-		IAI47_15395	0.20	-0.3
3,242,720	-		IAI47_15395	0.20	+0.8
3,242,723	+		IAI47_15395	0.21	+0.4
3,242,723	+		IAI47_15395	0.21	+1.7
3,242,723	+		IAI47_15395	0.21	+0.4
3,242,723	+		IAI47_15395	0.21	+2.2
3,242,723	+		IAI47_15395	0.21	+0.9
3,242,724	-		IAI47_15395	0.21	+2.4
3,242,724	-		IAI47_15395	0.21	-1.2
3,242,724	-		IAI47_15395	0.21	+1.8
3,242,724	-		IAI47_15395	0.21	-0.6
3,242,724	-		IAI47_15395	0.21	+0.5
3,242,724	-		IAI47_15395	0.21	+0.5
3,242,724	-		IAI47_15395	0.21	-0.2
3,242,724	-		IAI47_15395	0.21	+1.4
3,242,724	-		IAI47_15395	0.21	-0.1
3,242,759	+		IAI47_15395	0.25	+0.8
3,242,759	+		IAI47_15395	0.25	+1.2
3,242,760	-		IAI47_15395	0.25	-0.2
3,242,760	-		IAI47_15395	0.25	-0.6
3,242,760	-		IAI47_15395	0.25	-1.4
3,242,760	-		IAI47_15395	0.25	+0.8
3,242,825	+		IAI47_15395	0.33	-3.3
3,242,825	+		IAI47_15395	0.33	-1.3
3,242,825	+		IAI47_15395	0.33	+0.7
3,242,826	-		IAI47_15395	0.33	+0.4
3,242,855	+		IAI47_15395	0.37	+0.3
3,242,855	+		IAI47_15395	0.37	+0.1