Strain Fitness in Pantoea sp. MT58 around IAI47_15195

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,202,891	-		IAI47_15185	0.85	+1.2
3,202,947	+				+0.0
3,202,962	+				-0.8
3,202,962	+				+2.4
3,202,962	+				+1.6
3,202,963	-				+0.7
3,202,963	-				-1.8
3,203,004	+				+0.1
3,203,004	+				-0.2
3,203,004	+				-0.6
3,203,004	+				+2.5
3,203,004	+				+0.4
3,203,004	+				-0.0
3,203,004	+				-0.7
3,203,004	+				+0.1
3,203,005	-				-2.0
3,203,005	-				-0.9
3,203,005	-				-1.9
3,203,005	-				+0.6
3,203,005	-				+0.1
3,203,005	-				+0.9
3,203,005	-				-0.6
3,203,005	-				-0.5
3,203,005	-				-0.2
3,203,005	-				-0.4
3,203,005	-				+0.1
3,203,005	-				-0.2
3,203,008	+				-0.2
3,203,008	+				+2.4
3,203,009	-				+0.4
3,203,021	+				+0.6
3,203,021	+				+1.4
3,203,022	-				+0.2
3,203,022	-				+0.7
3,203,056	-				-0.7
3,203,056	-				+1.5
3,203,649	-				-0.8
3,203,659	-				-3.5
3,203,724	+				-2.2
3,203,724	+				-0.8
3,203,724	+				-0.2
3,203,734	+				-0.2
3,203,734	+				+3.7
3,203,734	+				-1.6
3,203,735	-				+2.4
3,203,735	-				+0.6
3,203,735	-				+1.3
3,203,735	-				+0.6
3,203,735	-				-1.0
3,203,735	-				+1.7
3,203,737	-				-0.7
3,203,765	+				-1.2
3,203,766	-				+3.0
3,203,793	-				+1.7
3,203,835	-				-1.1
3,203,835	-				+0.3
3,203,835	-				+1.0
3,203,835	-				-1.2
3,203,846	+				+0.7
3,203,846	+				-2.0
3,203,847	-				+1.4
3,203,847	-				+0.5
3,203,848	+				-0.6
3,203,865	+				+1.3
3,203,885	+				+0.8
3,203,885	+				-1.6
3,203,885	+				+1.0
3,203,885	+				-2.4
3,203,886	-				-2.0
3,203,886	-				-0.6
3,203,886	-				-0.6
3,203,902	+				-0.6
3,203,902	+				+0.4
3,203,902	+				+1.0
3,203,937	+				-0.9
3,203,937	+				+0.8
3,203,953	+				-1.4
3,204,059	+				-0.6
3,204,121	+				-0.9
3,204,121	+				-0.3
3,204,121	+				-1.4
3,204,122	-				+1.0
3,204,122	-				+0.8
3,204,122	-				-1.2
3,204,122	-				-0.2
3,204,122	-				-1.4
3,204,228	+		IAI47_15195	0.14	+2.4
3,204,228	+		IAI47_15195	0.14	+1.4
3,204,228	+		IAI47_15195	0.14	-0.2
3,204,228	+		IAI47_15195	0.14	+0.0
3,204,228	+		IAI47_15195	0.14	+0.7
3,204,229	-		IAI47_15195	0.14	+0.3
3,204,229	-		IAI47_15195	0.14	-1.4
3,204,229	-		IAI47_15195	0.14	+0.1
3,204,229	-		IAI47_15195	0.14	-1.1
3,204,229	-		IAI47_15195	0.14	+0.0
3,204,336	-		IAI47_15195	0.18	+1.0
3,204,357	+		IAI47_15195	0.19	-1.1
3,204,357	+		IAI47_15195	0.19	-1.4
3,204,357	+		IAI47_15195	0.19	-0.3
3,204,358	-		IAI47_15195	0.19	-2.4
3,204,358	-		IAI47_15195	0.19	-2.7
3,204,358	-		IAI47_15195	0.19	-2.4
3,204,358	-		IAI47_15195	0.19	+0.2
3,204,426	+		IAI47_15195	0.22	-0.7
3,204,426	+		IAI47_15195	0.22	-1.9
3,204,427	-		IAI47_15195	0.22	+0.6
3,204,483	-		IAI47_15195	0.24	-1.4
3,204,483	-		IAI47_15195	0.24	-1.4
3,204,483	-		IAI47_15195	0.24	-0.6
3,204,497	+		IAI47_15195	0.25	-0.9
3,204,498	-		IAI47_15195	0.25	+0.4
3,204,498	-		IAI47_15195	0.25	-1.2
3,204,498	-		IAI47_15195	0.25	-1.2
3,204,498	-		IAI47_15195	0.25	+2.0
3,204,498	-		IAI47_15195	0.25	+1.0
3,204,498	-		IAI47_15195	0.25	+1.0
3,204,498	-		IAI47_15195	0.25	-0.2
3,204,532	-		IAI47_15195	0.26	+0.7
3,204,647	+		IAI47_15195	0.31	-1.2
3,204,720	+		IAI47_15195	0.34	-2.4
3,204,720	+		IAI47_15195	0.34	-1.4
3,204,720	+		IAI47_15195	0.34	-0.9
3,204,721	-		IAI47_15195	0.34	-1.2
3,204,725	+		IAI47_15195	0.34	-0.8
3,204,725	+		IAI47_15195	0.34	-1.9
3,204,725	+		IAI47_15195	0.34	-1.2
3,204,725	+		IAI47_15195	0.34	-1.2
3,204,725	+		IAI47_15195	0.34	-0.2
3,204,725	+		IAI47_15195	0.34	+1.2
3,204,725	+		IAI47_15195	0.34	-0.5
3,204,725	+		IAI47_15195	0.34	+0.4
3,204,725	+		IAI47_15195	0.34	-1.5
3,204,726	-		IAI47_15195	0.34	+0.2
3,204,726	-		IAI47_15195	0.34	+0.3
3,204,726	-		IAI47_15195	0.34	+2.5
3,204,726	-		IAI47_15195	0.34	-0.4
3,204,726	-		IAI47_15195	0.34	-0.6
3,204,812	+		IAI47_15195	0.38	-2.2
3,204,813	-		IAI47_15195	0.38	-0.3
3,204,813	-		IAI47_15195	0.38	+0.1
3,204,813	-		IAI47_15195	0.38	-1.0
3,204,813	-		IAI47_15195	0.38	-0.6
3,204,815	+		IAI47_15195	0.38	-0.2
3,204,815	+		IAI47_15195	0.38	-0.6
3,204,815	+		IAI47_15195	0.38	-2.6
3,204,815	+		IAI47_15195	0.38	+2.0
3,204,815	+		IAI47_15195	0.38	-0.4
3,204,815	+		IAI47_15195	0.38	+0.4
3,204,815	+		IAI47_15195	0.38	+0.4
3,204,816	-		IAI47_15195	0.38	+0.7
3,204,816	-		IAI47_15195	0.38	+0.2
3,204,816	-		IAI47_15195	0.38	-0.3
3,204,816	-		IAI47_15195	0.38	-0.4
3,204,816	-		IAI47_15195	0.38	-0.2
3,204,816	-		IAI47_15195	0.38	-0.8
3,204,816	-		IAI47_15195	0.38	+1.4
3,204,879	-		IAI47_15195	0.41	+2.0
3,204,879	-		IAI47_15195	0.41	-0.1
3,204,917	+		IAI47_15195	0.42	-0.2
3,204,936	+		IAI47_15195	0.43	+0.7
3,204,936	+		IAI47_15195	0.43	-1.2
3,204,936	+		IAI47_15195	0.43	+0.9
3,204,936	+		IAI47_15195	0.43	+1.2
3,204,936	+		IAI47_15195	0.43	-1.5
3,204,936	+		IAI47_15195	0.43	+0.1
3,204,937	-		IAI47_15195	0.43	-0.8
3,204,937	-		IAI47_15195	0.43	-0.0
3,204,937	-		IAI47_15195	0.43	-0.7
3,204,938	+		IAI47_15195	0.43	-1.2
3,204,938	+		IAI47_15195	0.43	+1.0
3,204,938	+		IAI47_15195	0.43	-1.1
3,204,938	+		IAI47_15195	0.43	-0.9
3,204,938	+		IAI47_15195	0.43	+0.8
3,204,938	+		IAI47_15195	0.43	-0.0
3,204,938	+		IAI47_15195	0.43	-0.7
3,204,938	+		IAI47_15195	0.43	-1.2
3,204,938	+		IAI47_15195	0.43	-2.3
3,204,938	+		IAI47_15195	0.43	-1.2
3,204,939	-		IAI47_15195	0.43	-1.2
3,204,939	-		IAI47_15195	0.43	-1.9
3,204,939	-		IAI47_15195	0.43	-0.6
3,204,939	-		IAI47_15195	0.43	+1.0
3,204,941	+		IAI47_15195	0.43	-1.9
3,205,013	+		IAI47_15195	0.46	-0.8
3,205,071	+		IAI47_15195	0.48	-1.8
3,205,071	+		IAI47_15195	0.48	+0.4
3,205,071	+		IAI47_15195	0.48	+0.7
3,205,071	+		IAI47_15195	0.48	+1.4
3,205,071	+		IAI47_15195	0.48	-3.0
3,205,071	+		IAI47_15195	0.48	+0.0
3,205,072	-		IAI47_15195	0.48	-1.6
3,205,072	-		IAI47_15195	0.48	+1.2
3,205,072	-		IAI47_15195	0.48	-1.0
3,205,072	-		IAI47_15195	0.48	-0.8
3,205,072	-		IAI47_15195	0.48	+0.0
3,205,072	-		IAI47_15195	0.48	-1.3
3,205,109	+		IAI47_15195	0.50	-2.4
3,205,110	-		IAI47_15195	0.50	-0.4
3,205,110	-		IAI47_15195	0.50	-1.9
3,205,158	+		IAI47_15195	0.52	-1.9
3,205,158	+		IAI47_15195	0.52	-1.2
3,205,158	+		IAI47_15195	0.52	-3.0
3,205,158	+		IAI47_15195	0.52	+2.0
3,205,158	+		IAI47_15195	0.52	+0.4
3,205,158	+		IAI47_15195	0.52	+0.3
3,205,158	+		IAI47_15195	0.52	+0.1
3,205,159	-		IAI47_15195	0.52	-0.8
3,205,159	-		IAI47_15195	0.52	+1.2
3,205,159	-		IAI47_15195	0.52	-0.6
3,205,159	-		IAI47_15195	0.52	-2.3
3,205,159	-		IAI47_15195	0.52	-0.3
3,205,159	-		IAI47_15195	0.52	-1.6
3,205,159	-		IAI47_15195	0.52	-0.5
3,205,159	-		IAI47_15195	0.52	-0.4
3,205,159	-		IAI47_15195	0.52	-1.2
3,205,159	-		IAI47_15195	0.52	+0.7
3,205,159	-		IAI47_15195	0.52	+2.0
3,205,178	+		IAI47_15195	0.53	-0.2
3,205,179	-		IAI47_15195	0.53	+0.4
3,205,199	+		IAI47_15195	0.54	+1.0
3,205,200	-		IAI47_15195	0.54	-1.1
3,205,200	-		IAI47_15195	0.54	-1.6
3,205,200	-		IAI47_15195	0.54	-1.2
3,205,242	+		IAI47_15195	0.55	-0.1
3,205,242	+		IAI47_15195	0.55	+1.0
3,205,242	+		IAI47_15195	0.55	-1.2
3,205,243	-		IAI47_15195	0.55	+3.1
3,205,243	-		IAI47_15195	0.55	+0.4
3,205,243	-		IAI47_15195	0.55	-0.3
3,205,243	-		IAI47_15195	0.55	+1.6
3,205,243	-		IAI47_15195	0.55	+2.0
3,205,283	+		IAI47_15195	0.57	-0.2
3,205,283	+		IAI47_15195	0.57	-0.2
3,205,284	-		IAI47_15195	0.57	-0.3
3,205,284	-		IAI47_15195	0.57	-0.6
3,205,284	-		IAI47_15195	0.57	-1.0
3,205,289	+		IAI47_15195	0.57	-1.2
3,205,290	-		IAI47_15195	0.57	+0.4
3,205,290	-		IAI47_15195	0.57	-1.2
3,205,310	+		IAI47_15195	0.58	+0.6
3,205,310	+		IAI47_15195	0.58	+0.4
3,205,310	+		IAI47_15195	0.58	+1.0
3,205,311	-		IAI47_15195	0.58	-0.4
3,205,311	-		IAI47_15195	0.58	-0.3
3,205,311	-		IAI47_15195	0.58	-0.0
3,205,326	-		IAI47_15195	0.59	+0.8
3,205,326	-		IAI47_15195	0.59	-0.6
3,205,344	+		IAI47_15195	0.59	-0.6
3,205,344	+		IAI47_15195	0.59	-0.4
3,205,345	-		IAI47_15195	0.60	-0.6
3,205,406	+		IAI47_15195	0.62	+0.4
3,205,406	+		IAI47_15195	0.62	-2.2
3,205,406	+		IAI47_15195	0.62	-0.6
3,205,406	+		IAI47_15195	0.62	-1.6
3,205,406	+		IAI47_15195	0.62	+0.4
3,205,407	-		IAI47_15195	0.62	+0.0
3,205,407	-		IAI47_15195	0.62	-1.2
3,205,407	-		IAI47_15195	0.62	-1.7
3,205,407	-		IAI47_15195	0.62	-1.1
3,205,407	-		IAI47_15195	0.62	-0.6
3,205,407	-		IAI47_15195	0.62	-1.1
3,205,440	+		IAI47_15195	0.63	-1.5
3,205,440	+		IAI47_15195	0.63	-0.6
3,205,440	+		IAI47_15195	0.63	+0.0
3,205,440	+		IAI47_15195	0.63	-0.6
3,205,440	+		IAI47_15195	0.63	+0.8
3,205,440	+		IAI47_15195	0.63	+1.0
3,205,440	+		IAI47_15195	0.63	+0.1
3,205,440	+		IAI47_15195	0.63	+0.8
3,205,441	-		IAI47_15195	0.63	-0.8
3,205,441	-		IAI47_15195	0.63	-1.1
3,205,441	-		IAI47_15195	0.63	+0.3
3,205,441	-		IAI47_15195	0.63	+1.1
3,205,441	-		IAI47_15195	0.63	-0.4
3,205,441	-		IAI47_15195	0.63	-0.7
3,205,441	-		IAI47_15195	0.63	+0.0
3,205,441	-		IAI47_15195	0.63	+0.1
3,205,441	-		IAI47_15195	0.63	-2.4
3,205,441	-		IAI47_15195	0.63	+0.4
3,205,441	-		IAI47_15195	0.63	-0.6
3,205,441	-		IAI47_15195	0.63	+0.0
3,205,444	+		IAI47_15195	0.64	-0.6
3,205,444	+		IAI47_15195	0.64	+0.4
3,205,444	+		IAI47_15195	0.64	-0.2
3,205,444	+		IAI47_15195	0.64	-1.0
3,205,444	+		IAI47_15195	0.64	-1.4
3,205,445	-		IAI47_15195	0.64	+2.7
3,205,445	-		IAI47_15195	0.64	+0.0
3,205,445	-		IAI47_15195	0.64	-2.2
3,205,558	+		IAI47_15195	0.68	+0.2
3,205,559	-		IAI47_15195	0.68	-0.5
3,205,559	-		IAI47_15195	0.68	-1.4
3,205,559	-		IAI47_15195	0.68	-1.2
3,205,559	-		IAI47_15195	0.68	+1.2
3,205,611	+		IAI47_15195	0.70	+0.7
3,205,612	-		IAI47_15195	0.70	-0.5
3,205,612	-		IAI47_15195	0.70	+0.2
3,205,612	-		IAI47_15195	0.70	-1.5
3,205,704	-		IAI47_15195	0.74	+1.3
3,205,740	+		IAI47_15195	0.76	+1.4
3,205,740	+		IAI47_15195	0.76	-1.5
3,205,740	+		IAI47_15195	0.76	-0.3
3,205,740	+		IAI47_15195	0.76	-1.1
3,205,740	+		IAI47_15195	0.76	+0.4
3,205,741	-		IAI47_15195	0.76	-0.2
3,205,741	-		IAI47_15195	0.76	-1.3
3,205,767	+		IAI47_15195	0.77	-2.4
3,205,767	+		IAI47_15195	0.77	-1.9
3,205,768	-		IAI47_15195	0.77	+0.4
3,205,784	+		IAI47_15195	0.77	+0.0
3,205,784	+		IAI47_15195	0.77	+0.2
3,205,850	+		IAI47_15195	0.80	-1.7
3,205,851	-		IAI47_15195	0.80	-1.9
3,205,868	+		IAI47_15195	0.81	-0.3
3,205,868	+		IAI47_15195	0.81	+0.6
3,205,868	+		IAI47_15195	0.81	-2.2
3,205,869	-		IAI47_15195	0.81	-0.6
3,206,023	-		IAI47_15195	0.87	-0.1
3,206,023	-		IAI47_15195	0.87	-0.2
3,206,023	-		IAI47_15195	0.87	-0.3
3,206,042	+		IAI47_15195	0.88	-1.0
3,206,042	+		IAI47_15195	0.88	+0.9
3,206,043	-		IAI47_15195	0.88	+0.1
3,206,334	+				-0.8
3,206,334	+				+0.7
3,206,334	+				+0.4
3,206,334	+				-0.1
3,206,335	-				-0.1
3,206,335	-				-0.2
3,206,373	+				+1.2
3,206,373	+				+1.4
3,206,373	+				+1.4
3,206,373	+				+0.7
3,206,373	+				-0.3
3,206,373	+				-0.7
3,206,373	+				-1.5
3,206,373	+				-0.0
3,206,374	-				+1.0
3,206,374	-				+2.7
3,206,374	-				+1.4
3,206,374	-				-0.2
3,206,374	-				+0.7
3,206,374	-				-1.4
3,206,374	-				-0.7
3,206,374	-				+0.4
3,206,374	-				+0.2
3,206,374	-				+1.2
3,206,447	+				-0.4
3,206,448	-				+1.7
3,206,448	-				-0.0
3,206,458	+				+1.0
3,206,458	+				+0.8
3,206,458	+				-0.2
3,206,458	+				-0.1
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3,206,458	+				+1.6
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3,207,277	+		IAI47_15200	0.46	-0.9
3,207,277	+		IAI47_15200	0.46	+0.2
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3,207,278	-		IAI47_15200	0.47	+1.1
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3,207,278	-		IAI47_15200	0.47	+0.3
3,207,278	-		IAI47_15200	0.47	+1.0
3,207,313	+		IAI47_15200	0.49	+2.2