Strain Fitness in Pantoea sp. MT58 around IAI47_15050

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,173,565	+		IAI47_15045	0.42	-0.3
3,173,565	+		IAI47_15045	0.42	-0.6
3,173,566	-		IAI47_15045	0.42	+0.4
3,173,594	+		IAI47_15045	0.44	+0.3
3,173,699	+		IAI47_15045	0.52	+1.2
3,173,700	-		IAI47_15045	0.52	+0.1
3,173,700	-		IAI47_15045	0.52	-0.2
3,173,700	-		IAI47_15045	0.52	+0.0
3,173,704	+		IAI47_15045	0.52	-0.0
3,173,704	+		IAI47_15045	0.52	-1.0
3,173,704	+		IAI47_15045	0.52	-0.4
3,173,704	+		IAI47_15045	0.52	-0.7
3,173,704	+		IAI47_15045	0.52	-0.9
3,173,705	-		IAI47_15045	0.52	+0.4
3,173,705	-		IAI47_15045	0.52	-1.9
3,173,705	-		IAI47_15045	0.52	+0.0
3,173,705	-		IAI47_15045	0.52	+1.0
3,173,785	+		IAI47_15045	0.58	+0.1
3,173,785	+		IAI47_15045	0.58	+0.7
3,173,848	+		IAI47_15045	0.63	+1.8
3,173,848	+		IAI47_15045	0.63	+1.7
3,173,848	+		IAI47_15045	0.63	+1.7
3,173,848	+		IAI47_15045	0.63	+0.9
3,173,848	+		IAI47_15045	0.63	-0.7
3,173,848	+		IAI47_15045	0.63	-0.8
3,173,848	+		IAI47_15045	0.63	+1.6
3,173,849	-		IAI47_15045	0.63	-1.0
3,173,849	-		IAI47_15045	0.63	-1.2
3,173,849	-		IAI47_15045	0.63	-0.3
3,173,882	+		IAI47_15045	0.65	-0.4
3,173,882	+		IAI47_15045	0.65	+0.0
3,173,882	+		IAI47_15045	0.65	-0.7
3,173,883	-		IAI47_15045	0.65	+1.6
3,174,032	+		IAI47_15045	0.76	-1.3
3,174,033	-		IAI47_15045	0.76	+0.4
3,174,131	-		IAI47_15045	0.83	+0.0
3,174,258	+				+0.5
3,174,258	+				-0.8
3,174,258	+				+0.7
3,174,258	+				-0.2
3,174,258	+				-1.9
3,174,258	+				+0.7
3,174,259	-				+0.1
3,174,259	-				+0.5
3,174,259	-				+0.9
3,174,259	-				+0.5
3,174,259	-				+0.5
3,174,442	+				-1.2
3,174,442	+				+0.7
3,174,442	+				-0.9
3,174,443	-				+0.8
3,174,443	-				+0.4
3,174,443	-				+3.0
3,174,540	+				-0.1
3,174,541	-				-0.6
3,174,592	+		IAI47_15050	0.15	+0.8
3,174,592	+		IAI47_15050	0.15	+0.8
3,174,592	+		IAI47_15050	0.15	-1.6
3,174,592	+		IAI47_15050	0.15	-0.3
3,174,592	+		IAI47_15050	0.15	-1.0
3,174,593	-		IAI47_15050	0.16	+2.1
3,174,593	-		IAI47_15050	0.16	-1.0
3,174,593	-		IAI47_15050	0.16	+0.7
3,174,612	-		IAI47_15050	0.24	+0.4
3,174,612	-		IAI47_15050	0.24	+0.1
3,174,612	-		IAI47_15050	0.24	+1.1
3,174,612	-		IAI47_15050	0.24	-1.3
3,174,612	-		IAI47_15050	0.24	-1.2
3,174,612	-		IAI47_15050	0.24	+0.2
3,174,613	+		IAI47_15050	0.25	+1.4
3,174,614	-		IAI47_15050	0.25	+1.2
3,174,614	-		IAI47_15050	0.25	-1.2
3,174,653	+		IAI47_15050	0.43	+0.3
3,174,678	+		IAI47_15050	0.54	+0.9
3,174,678	+		IAI47_15050	0.54	-0.2
3,174,678	+		IAI47_15050	0.54	+0.8
3,174,679	-		IAI47_15050	0.55	-1.3
3,174,706	-		IAI47_15050	0.67	-0.2
3,174,706	-		IAI47_15050	0.67	+1.8
3,174,706	-		IAI47_15050	0.67	-0.1
3,174,706	-		IAI47_15050	0.67	+2.0
3,174,719	-		IAI47_15050	0.73	+2.0
3,174,730	+		IAI47_15050	0.78	-0.5
3,174,731	-		IAI47_15050	0.79	+0.1
3,174,731	-		IAI47_15050	0.79	-0.2
3,174,733	+		IAI47_15050	0.79	+1.0
3,174,733	+		IAI47_15050	0.79	+0.6
3,174,733	+		IAI47_15050	0.79	-1.7
3,174,733	+		IAI47_15050	0.79	-0.0
3,174,734	-		IAI47_15050	0.80	-0.2
3,174,738	+		IAI47_15050	0.82	-0.1
3,174,738	+		IAI47_15050	0.82	+0.4
3,174,738	+		IAI47_15050	0.82	-0.2
3,174,738	+		IAI47_15050	0.82	-1.8
3,174,739	-		IAI47_15050	0.82	-1.0
3,174,739	-		IAI47_15050	0.82	-0.3
3,174,771	+				-0.6
3,174,772	-				-2.2
3,174,791	+				-0.7
3,174,803	+				+0.4
3,174,803	+				-0.8
3,174,804	-				-0.6
3,174,812	+				-0.4
3,174,813	-				+2.0
3,174,826	+				+1.4
3,174,826	+				+0.3
3,174,826	+				+0.1
3,174,827	-				+0.2
3,174,827	-				-0.4
3,174,828	+				-1.3
3,174,828	+				-0.2
3,174,828	+				+0.4
3,174,837	+				-0.1
3,174,837	+				-0.8
3,174,838	-				+0.7
3,174,883	+				+1.7
3,174,884	-				+1.4
3,174,889	+				+1.0
3,174,890	-				+0.2
3,174,890	-				+0.4
3,174,890	-				+0.4
3,174,904	+				-0.6
3,174,905	-				+0.1
3,174,956	+				+1.0
3,174,956	+				+1.0
3,174,956	+				+0.2
3,174,956	+				-0.7
3,174,956	+				-1.3
3,174,956	+				+0.2
3,174,957	-				-1.1
3,174,958	+				-0.4
3,174,960	+				+0.4
3,174,960	+				-1.2
3,174,960	+				+0.6
3,174,960	+				+1.2
3,174,961	-				-0.9
3,174,979	+				-0.2
3,174,980	-				-0.2
3,175,013	+				+0.4
3,175,060	+				-0.6
3,175,060	+				+0.4
3,175,061	-				-0.2
3,175,061	-				-0.2
3,175,067	-				-0.3
3,175,084	+				-1.2
3,175,085	-				+0.2
3,175,085	-				-0.2
3,175,085	-				+0.6
3,175,085	-				+0.6
3,175,085	-				+1.4
3,175,092	+				-1.0
3,175,092	+				-0.1
3,175,093	-				-0.2
3,175,093	-				-0.2
3,175,156	-				+1.3
3,175,156	-				+0.1
3,175,156	-				-0.8
3,175,257	+				-0.2
3,175,258	-				-0.6
3,175,258	-				+0.1
3,175,258	-				+0.0
3,175,286	+				+0.8
3,175,286	+				+0.3
3,175,286	+				+1.2
3,175,300	+				+0.4
3,175,301	-				-0.4
3,175,303	+				+0.7
3,175,303	+				+0.4
3,175,303	+				-0.3
3,175,303	+				+0.9
3,175,303	+				-0.4
3,175,304	-				-1.0
3,175,304	-				+1.3
3,175,304	-				+1.0
3,175,304	-				-0.2
3,175,304	-				+0.0
3,175,304	-				+0.3
3,175,304	-				-0.7
3,175,347	-		IAI47_15055	0.11	+1.6
3,175,365	-		IAI47_15055	0.13	-0.4
3,175,372	+		IAI47_15055	0.13	-0.8
3,175,373	-		IAI47_15055	0.13	-0.1
3,175,382	+		IAI47_15055	0.14	+0.7
3,175,383	-		IAI47_15055	0.14	-0.3
3,175,383	-		IAI47_15055	0.14	+0.2
3,175,383	-		IAI47_15055	0.14	-0.8
3,175,642	+		IAI47_15055	0.33	-1.0
3,175,697	+		IAI47_15055	0.37	-1.4
3,175,697	+		IAI47_15055	0.37	-0.6
3,175,697	+		IAI47_15055	0.37	-1.3
3,175,698	-		IAI47_15055	0.37	+0.4
3,175,698	-		IAI47_15055	0.37	+0.4
3,175,698	-		IAI47_15055	0.37	-0.9
3,175,698	-		IAI47_15055	0.37	-0.2