Strain Fitness in Pantoea sp. MT58 around IAI47_14835

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,127,323	+		IAI47_14830	0.34	+0.8
3,127,324	-		IAI47_14830	0.34	-1.6
3,127,365	+		IAI47_14830	0.37	+0.0
3,127,366	-		IAI47_14830	0.37	+0.2
3,127,429	+		IAI47_14830	0.42	+1.4
3,127,429	+		IAI47_14830	0.42	+1.1
3,127,429	+		IAI47_14830	0.42	+1.8
3,127,429	+		IAI47_14830	0.42	-0.7
3,127,430	-		IAI47_14830	0.42	+0.8
3,127,445	+		IAI47_14830	0.43	-0.6
3,127,445	+		IAI47_14830	0.43	+0.1
3,127,445	+		IAI47_14830	0.43	-0.2
3,127,445	+		IAI47_14830	0.43	-1.2
3,127,445	+		IAI47_14830	0.43	-0.4
3,127,445	+		IAI47_14830	0.43	-0.6
3,127,445	+		IAI47_14830	0.43	+0.0
3,127,446	-		IAI47_14830	0.43	-0.2
3,127,446	-		IAI47_14830	0.43	-1.2
3,127,446	-		IAI47_14830	0.43	-0.6
3,127,455	+		IAI47_14830	0.44	-1.3
3,127,455	+		IAI47_14830	0.44	-0.9
3,127,455	+		IAI47_14830	0.44	-0.7
3,127,456	-		IAI47_14830	0.44	+0.1
3,127,456	-		IAI47_14830	0.44	-0.6
3,127,478	+		IAI47_14830	0.45	-0.2
3,127,478	+		IAI47_14830	0.45	-2.4
3,127,478	+		IAI47_14830	0.45	-0.6
3,127,478	+		IAI47_14830	0.45	+0.4
3,127,478	+		IAI47_14830	0.45	-0.1
3,127,478	+		IAI47_14830	0.45	-0.3
3,127,478	+		IAI47_14830	0.45	-0.6
3,127,478	+		IAI47_14830	0.45	-1.2
3,127,479	-		IAI47_14830	0.45	-1.2
3,127,479	-		IAI47_14830	0.45	+1.4
3,127,479	-		IAI47_14830	0.45	-0.4
3,127,479	-		IAI47_14830	0.45	+0.4
3,127,479	-		IAI47_14830	0.45	+0.1
3,127,479	-		IAI47_14830	0.45	+0.6
3,127,479	-		IAI47_14830	0.45	-1.2
3,127,479	-		IAI47_14830	0.45	-0.6
3,127,479	-		IAI47_14830	0.45	+0.2
3,127,479	-		IAI47_14830	0.45	+1.0
3,127,479	-		IAI47_14830	0.45	+0.4
3,127,510	-		IAI47_14830	0.48	+1.5
3,127,657	+		IAI47_14830	0.59	+0.2
3,127,657	+		IAI47_14830	0.59	-0.2
3,127,658	-		IAI47_14830	0.59	+0.2
3,127,658	-		IAI47_14830	0.59	+1.0
3,127,658	-		IAI47_14830	0.59	+0.6
3,127,662	+		IAI47_14830	0.59	-0.8
3,127,663	-		IAI47_14830	0.59	-1.0
3,127,663	-		IAI47_14830	0.59	-1.9
3,127,878	+		IAI47_14830	0.75	-0.6
3,127,879	-		IAI47_14830	0.75	-0.1
3,127,879	-		IAI47_14830	0.75	-0.6
3,127,879	-		IAI47_14830	0.75	-1.1
3,127,879	-		IAI47_14830	0.75	-1.0
3,127,880	+		IAI47_14830	0.75	-1.5
3,127,880	+		IAI47_14830	0.75	-1.3
3,127,880	+		IAI47_14830	0.75	-0.2
3,127,880	+		IAI47_14830	0.75	+1.6
3,127,880	+		IAI47_14830	0.75	-2.2
3,127,880	+		IAI47_14830	0.75	+0.4
3,127,880	+		IAI47_14830	0.75	+1.7
3,127,880	+		IAI47_14830	0.75	-0.3
3,127,880	+		IAI47_14830	0.75	-0.4
3,127,880	+		IAI47_14830	0.75	-0.2
3,127,881	-		IAI47_14830	0.75	-0.8
3,127,881	-		IAI47_14830	0.75	+1.4
3,127,881	-		IAI47_14830	0.75	-0.4
3,127,881	-		IAI47_14830	0.75	-1.2
3,127,881	-		IAI47_14830	0.75	-1.6
3,127,881	-		IAI47_14830	0.75	-1.2
3,127,881	-		IAI47_14830	0.75	-1.2
3,127,881	-		IAI47_14830	0.75	+0.6
3,127,881	-		IAI47_14830	0.75	-0.2
3,127,881	-		IAI47_14830	0.75	-0.4
3,127,881	-		IAI47_14830	0.75	+0.7
3,127,934	+		IAI47_14830	0.79	-1.2
3,127,935	-		IAI47_14830	0.79	+0.6
3,127,935	-		IAI47_14830	0.79	-2.6
3,127,935	-		IAI47_14830	0.79	+1.2
3,127,952	+		IAI47_14830	0.80	+0.4
3,127,952	+		IAI47_14830	0.80	+1.1
3,127,953	-		IAI47_14830	0.80	-0.2
3,127,973	+		IAI47_14830	0.82	+0.4
3,127,973	+		IAI47_14830	0.82	+0.5
3,127,973	+		IAI47_14830	0.82	-1.2
3,127,973	+		IAI47_14830	0.82	-0.2
3,127,973	+		IAI47_14830	0.82	+1.0
3,127,973	+		IAI47_14830	0.82	+1.9
3,127,973	+		IAI47_14830	0.82	-1.3
3,127,973	+		IAI47_14830	0.82	+0.4
3,127,973	+		IAI47_14830	0.82	-0.6
3,127,973	+		IAI47_14830	0.82	+0.4
3,127,973	+		IAI47_14830	0.82	-0.2
3,127,973	+		IAI47_14830	0.82	-0.2
3,127,974	-		IAI47_14830	0.82	+0.4
3,127,974	-		IAI47_14830	0.82	-1.9
3,127,974	-		IAI47_14830	0.82	-1.6
3,127,974	-		IAI47_14830	0.82	+1.3
3,127,974	-		IAI47_14830	0.82	-1.0
3,127,974	-		IAI47_14830	0.82	-0.9
3,127,974	-		IAI47_14830	0.82	+0.6
3,127,985	+		IAI47_14830	0.83	+0.4
3,127,985	+		IAI47_14830	0.83	+1.0
3,127,985	+		IAI47_14830	0.83	+0.8
3,127,985	+		IAI47_14830	0.83	-0.6
3,127,986	-		IAI47_14830	0.83	+2.2
3,127,986	-		IAI47_14830	0.83	+0.0
3,127,986	-		IAI47_14830	0.83	+1.4
3,128,013	+		IAI47_14830	0.85	-0.2
3,128,014	-		IAI47_14830	0.85	-0.6
3,128,014	-		IAI47_14830	0.85	+0.9
3,128,014	-		IAI47_14830	0.85	+1.4
3,128,014	-		IAI47_14830	0.85	+0.3
3,128,014	-		IAI47_14830	0.85	+0.1
3,128,051	+		IAI47_14830	0.88	+0.5
3,128,051	+		IAI47_14830	0.88	-1.0
3,128,051	+		IAI47_14830	0.88	-0.9
3,128,052	-		IAI47_14830	0.88	-0.7
3,128,052	-		IAI47_14830	0.88	+0.4
3,128,052	-		IAI47_14830	0.88	+0.6
3,128,052	-		IAI47_14830	0.88	+1.0
3,128,052	-		IAI47_14830	0.88	+1.0
3,128,052	-		IAI47_14830	0.88	-2.4
3,128,052	-		IAI47_14830	0.88	-1.4
3,128,073	+		IAI47_14830	0.89	+0.1
3,128,073	+		IAI47_14830	0.89	-1.2
3,128,074	-		IAI47_14830	0.89	-0.6
3,128,074	-		IAI47_14830	0.89	+0.2
3,128,074	-		IAI47_14830	0.89	-0.6
3,128,074	-		IAI47_14830	0.89	-0.6
3,128,074	-		IAI47_14830	0.89	-0.7
3,128,074	-		IAI47_14830	0.89	+1.0
3,128,074	-		IAI47_14830	0.89	+0.4
3,128,075	+		IAI47_14830	0.89	-0.4
3,128,075	+		IAI47_14830	0.89	-1.9
3,128,075	+		IAI47_14830	0.89	-0.9
3,128,075	+		IAI47_14830	0.89	-0.2
3,128,075	+		IAI47_14830	0.89	+0.2
3,128,075	+		IAI47_14830	0.89	-1.9
3,128,075	+		IAI47_14830	0.89	+1.6
3,128,075	+		IAI47_14830	0.89	+0.2
3,128,075	+		IAI47_14830	0.89	+0.2
3,128,075	+		IAI47_14830	0.89	-0.6
3,128,076	-		IAI47_14830	0.90	+0.1
3,128,076	-		IAI47_14830	0.90	+2.0
3,128,076	-		IAI47_14830	0.90	+0.3
3,128,076	-		IAI47_14830	0.90	+0.4
3,128,076	-		IAI47_14830	0.90	-0.8
3,128,076	-		IAI47_14830	0.90	+0.6
3,128,076	-		IAI47_14830	0.90	-0.9
3,128,076	-		IAI47_14830	0.90	+0.6
3,128,076	-		IAI47_14830	0.90	+0.3
3,128,076	-		IAI47_14830	0.90	-1.0
3,128,126	+				-0.8
3,128,126	+				+0.3
3,128,127	-				+0.7
3,128,164	-				-0.3
3,128,164	-				-0.2
3,128,217	+				+1.0
3,128,217	+				-1.2
3,128,217	+				-0.6
3,128,218	-				-0.4
3,128,218	-				-1.0
3,128,218	-				+0.4
3,128,227	+				-0.2
3,128,227	+				-1.6
3,128,227	+				+0.2
3,128,228	-				-0.6
3,128,228	-				+2.3
3,128,228	-				-1.9
3,128,290	-				-0.2
3,128,446	+		IAI47_14835	0.12	-0.6
3,128,446	+		IAI47_14835	0.12	-0.7
3,128,447	-		IAI47_14835	0.12	+0.7
3,128,447	-		IAI47_14835	0.12	-0.6
3,128,447	-		IAI47_14835	0.12	+0.8
3,128,477	+		IAI47_14835	0.14	-1.4
3,128,477	+		IAI47_14835	0.14	-0.4
3,128,477	+		IAI47_14835	0.14	+0.1
3,128,477	+		IAI47_14835	0.14	-1.6
3,128,477	+		IAI47_14835	0.14	-1.3
3,128,477	+		IAI47_14835	0.14	-1.6
3,128,478	-		IAI47_14835	0.14	-0.6
3,128,541	-		IAI47_14835	0.19	-0.3
3,128,554	+		IAI47_14835	0.20	-1.8
3,128,554	+		IAI47_14835	0.20	-0.6
3,128,554	+		IAI47_14835	0.20	-0.2
3,128,555	-		IAI47_14835	0.20	-0.7
3,128,555	-		IAI47_14835	0.20	-1.3
3,128,555	-		IAI47_14835	0.20	+0.5
3,128,555	-		IAI47_14835	0.20	-1.8
3,128,650	+		IAI47_14835	0.27	+0.5
3,128,651	-		IAI47_14835	0.28	-0.6
3,128,651	-		IAI47_14835	0.28	-0.4
3,128,651	-		IAI47_14835	0.28	-0.8
3,128,665	+		IAI47_14835	0.29	-0.9
3,128,667	+		IAI47_14835	0.29	-0.6
3,128,667	+		IAI47_14835	0.29	-2.6
3,128,668	-		IAI47_14835	0.29	-1.4
3,128,673	-		IAI47_14835	0.29	-2.4
3,128,682	+		IAI47_14835	0.30	+1.5
3,128,682	+		IAI47_14835	0.30	+0.2
3,128,683	-		IAI47_14835	0.30	-0.1
3,128,683	-		IAI47_14835	0.30	-1.4
3,128,683	-		IAI47_14835	0.30	-0.8
3,128,776	+		IAI47_14835	0.37	+1.4
3,128,799	+		IAI47_14835	0.39	+0.4
3,128,799	+		IAI47_14835	0.39	+4.3
3,128,799	+		IAI47_14835	0.39	+0.4
3,128,799	+		IAI47_14835	0.39	-2.5
3,128,799	+		IAI47_14835	0.39	-1.0
3,128,799	+		IAI47_14835	0.39	-1.0
3,128,799	+		IAI47_14835	0.39	-2.2
3,128,800	-		IAI47_14835	0.39	+0.4
3,128,800	-		IAI47_14835	0.39	+0.9
3,128,800	-		IAI47_14835	0.39	+0.1
3,128,800	-		IAI47_14835	0.39	-0.3
3,128,800	-		IAI47_14835	0.39	-0.5
3,128,800	-		IAI47_14835	0.39	-0.2
3,128,800	-		IAI47_14835	0.39	-1.2
3,128,800	-		IAI47_14835	0.39	+0.4
3,128,800	-		IAI47_14835	0.39	-2.8
3,128,800	-		IAI47_14835	0.39	-2.3
3,128,800	-		IAI47_14835	0.39	+2.4
3,128,800	-		IAI47_14835	0.39	-0.6
3,128,800	-		IAI47_14835	0.39	-1.2
3,128,800	-		IAI47_14835	0.39	-0.2
3,128,867	-		IAI47_14835	0.44	+0.1
3,128,880	+		IAI47_14835	0.45	-1.0
3,128,880	+		IAI47_14835	0.45	+2.0
3,128,880	+		IAI47_14835	0.45	-1.6
3,128,881	-		IAI47_14835	0.45	-0.2
3,128,881	-		IAI47_14835	0.45	-0.4
3,128,881	-		IAI47_14835	0.45	+0.4
3,128,881	-		IAI47_14835	0.45	+1.0
3,128,926	+		IAI47_14835	0.48	-1.9
3,128,926	+		IAI47_14835	0.48	-1.7
3,128,927	-		IAI47_14835	0.48	-2.4
3,128,927	-		IAI47_14835	0.48	-0.4
3,128,927	-		IAI47_14835	0.48	-1.2
3,128,927	-		IAI47_14835	0.48	-0.6
3,128,927	-		IAI47_14835	0.48	-0.1
3,128,928	+		IAI47_14835	0.48	-0.8
3,128,929	-		IAI47_14835	0.49	-0.9
3,128,929	-		IAI47_14835	0.49	-1.0
3,129,013	+		IAI47_14835	0.55	-1.2
3,129,013	+		IAI47_14835	0.55	-1.2
3,129,014	-		IAI47_14835	0.55	-2.2
3,129,014	-		IAI47_14835	0.55	-0.9
3,129,027	+		IAI47_14835	0.56	-1.2
3,129,028	-		IAI47_14835	0.56	+0.1
3,129,028	-		IAI47_14835	0.56	+0.2
3,129,066	+		IAI47_14835	0.59	+1.2
3,129,167	+		IAI47_14835	0.67	+0.4
3,129,167	+		IAI47_14835	0.67	-0.6
3,129,167	+		IAI47_14835	0.67	-0.4
3,129,167	+		IAI47_14835	0.67	-0.4
3,129,167	+		IAI47_14835	0.67	-1.9
3,129,168	-		IAI47_14835	0.67	-0.8
3,129,168	-		IAI47_14835	0.67	-1.7
3,129,168	-		IAI47_14835	0.67	+0.4
3,129,168	-		IAI47_14835	0.67	-0.8
3,129,168	-		IAI47_14835	0.67	-0.6
3,129,200	+		IAI47_14835	0.69	-2.6
3,129,200	+		IAI47_14835	0.69	-0.4
3,129,222	+		IAI47_14835	0.71	-2.0
3,129,222	+		IAI47_14835	0.71	+1.2
3,129,223	-		IAI47_14835	0.71	-1.4
3,129,223	-		IAI47_14835	0.71	+0.4
3,129,223	-		IAI47_14835	0.71	-2.4
3,129,223	-		IAI47_14835	0.71	-0.3
3,129,223	-		IAI47_14835	0.71	-1.5
3,129,234	+		IAI47_14835	0.72	-0.2
3,129,234	+		IAI47_14835	0.72	+0.4
3,129,234	+		IAI47_14835	0.72	+0.1
3,129,234	+		IAI47_14835	0.72	-0.5
3,129,235	-		IAI47_14835	0.72	-0.1
3,129,235	-		IAI47_14835	0.72	+0.2
3,129,235	-		IAI47_14835	0.72	-0.3
3,129,238	+		IAI47_14835	0.72	+0.1
3,129,238	+		IAI47_14835	0.72	-0.9
3,129,238	+		IAI47_14835	0.72	+0.1
3,129,238	+		IAI47_14835	0.72	-1.8
3,129,239	-		IAI47_14835	0.72	-0.9
3,129,239	-		IAI47_14835	0.72	+0.2
3,129,339	+		IAI47_14835	0.80	-1.9
3,129,339	+		IAI47_14835	0.80	-3.0
3,129,340	-		IAI47_14835	0.80	+2.0
3,129,340	-		IAI47_14835	0.80	-2.6
3,129,340	-		IAI47_14835	0.80	-1.8
3,129,506	-				+0.0
3,129,562	+				+0.8
3,129,562	+				-1.9
3,129,562	+				-1.2
3,129,562	+				+0.4
3,129,563	-				+0.0
3,129,563	-				+1.4
3,129,607	+				-0.2
3,129,608	-				-1.8
3,129,608	-				+1.4
3,129,643	+				-0.9
3,129,643	+				-0.9
3,129,644	-				-1.7
3,129,699	+				-0.6
3,129,699	+				+1.4
3,129,699	+				-0.6
3,129,700	-				+0.6
3,129,700	-				+2.0
3,129,700	-				+0.2
3,129,715	+				+0.6
3,129,715	+				+2.0
3,129,716	-				-0.5
3,129,742	+				-0.9
3,129,742	+				-1.2
3,129,743	-				-1.2
3,129,743	-				+0.4
3,129,743	-				-0.9
3,129,778	+				-1.6
3,129,782	+				-0.4
3,129,782	+				+0.2
3,129,783	-				-2.2
3,129,783	-				+1.2
3,129,794	-				-1.2
3,129,809	+				+0.2
3,129,809	+				-1.2
3,129,833	+				+0.7
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