Strain Fitness in Pantoea sp. MT58 around IAI47_12240

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,586,534	+		IAI47_12235	0.39	+1.1
2,586,605	+		IAI47_12235	0.45	+0.4
2,586,605	+		IAI47_12235	0.45	-1.6
2,586,668	+		IAI47_12235	0.51	+0.6
2,586,668	+		IAI47_12235	0.51	-0.6
2,586,668	+		IAI47_12235	0.51	+2.9
2,586,668	+		IAI47_12235	0.51	-2.0
2,586,668	+		IAI47_12235	0.51	+1.4
2,586,668	+		IAI47_12235	0.51	+0.4
2,586,668	+		IAI47_12235	0.51	+0.8
2,586,668	+		IAI47_12235	0.51	+1.4
2,586,669	-		IAI47_12235	0.51	+0.7
2,586,669	-		IAI47_12235	0.51	+0.4
2,586,672	+		IAI47_12235	0.51	+0.8
2,586,672	+		IAI47_12235	0.51	-1.9
2,586,672	+		IAI47_12235	0.51	-1.0
2,586,672	+		IAI47_12235	0.51	+1.4
2,586,673	-		IAI47_12235	0.51	+0.8
2,586,716	+		IAI47_12235	0.55	-1.5
2,586,717	-		IAI47_12235	0.55	-1.4
2,586,721	+		IAI47_12235	0.55	+0.2
2,586,722	-		IAI47_12235	0.55	-0.6
2,586,722	-		IAI47_12235	0.55	+0.1
2,586,786	+		IAI47_12235	0.61	+1.8
2,586,800	+		IAI47_12235	0.62	+0.5
2,586,846	+		IAI47_12235	0.67	+2.1
2,586,846	+		IAI47_12235	0.67	-1.5
2,586,847	-		IAI47_12235	0.67	-0.8
2,586,847	-		IAI47_12235	0.67	-0.3
2,586,864	-		IAI47_12235	0.68	+1.9
2,586,926	+		IAI47_12235	0.74	-0.1
2,586,926	+		IAI47_12235	0.74	-0.9
2,586,927	-		IAI47_12235	0.74	-1.4
2,587,029	+		IAI47_12235	0.83	+0.1
2,587,055	+		IAI47_12235	0.85	-0.3
2,587,055	+		IAI47_12235	0.85	-1.1
2,587,055	+		IAI47_12235	0.85	+0.4
2,587,055	+		IAI47_12235	0.85	-1.2
2,587,055	+		IAI47_12235	0.85	+0.4
2,587,056	-		IAI47_12235	0.85	+0.4
2,587,058	+		IAI47_12235	0.86	+0.4
2,587,058	+		IAI47_12235	0.86	-0.8
2,587,058	+		IAI47_12235	0.86	-0.4
2,587,058	+		IAI47_12235	0.86	+1.1
2,587,058	+		IAI47_12235	0.86	+0.4
2,587,059	-		IAI47_12235	0.86	-0.6
2,587,064	+		IAI47_12235	0.86	+0.5
2,587,065	-		IAI47_12235	0.86	-0.8
2,587,065	-		IAI47_12235	0.86	+0.7
2,587,065	-		IAI47_12235	0.86	-0.9
2,587,065	-		IAI47_12235	0.86	-0.9
2,587,090	+		IAI47_12235	0.88	-0.9
2,587,090	+		IAI47_12235	0.88	+2.4
2,587,090	+		IAI47_12235	0.88	-0.1
2,587,090	+		IAI47_12235	0.88	+3.7
2,587,121	+				-1.0
2,587,121	+				+1.2
2,587,135	+				+0.2
2,587,135	+				+0.8
2,587,135	+				+1.2
2,587,135	+				+0.6
2,587,135	+				+0.2
2,587,136	-				-0.6
2,587,136	-				-0.2
2,587,136	-				+2.3
2,587,136	-				-1.2
2,587,136	-				-0.5
2,587,138	+				+0.6
2,587,138	+				+0.4
2,587,139	-				-1.6
2,587,139	-				-0.3
2,587,291	-				+0.2
2,587,321	+				-0.4
2,587,334	+				-1.4
2,587,334	+				-0.4
2,587,335	-				-0.6
2,587,363	-				+0.4
2,587,363	-				+2.2
2,587,378	-				-0.1
2,587,400	+				-0.4
2,587,416	-				+0.6
2,587,416	-				-0.4
2,587,418	+				-0.6
2,587,473	-				+2.4
2,587,473	-				+1.2
2,587,473	-				-0.6
2,587,480	+				-0.1
2,587,481	-				+0.2
2,587,517	+				+0.9
2,587,517	+				+0.4
2,587,517	+				-0.8
2,587,518	-				+1.2
2,587,518	-				+0.7
2,587,518	-				+1.1
2,587,521	-				+1.9
2,587,572	+		IAI47_12240	0.10	+0.4
2,587,573	-		IAI47_12240	0.10	+0.4
2,587,588	+		IAI47_12240	0.13	-1.2
2,587,588	+		IAI47_12240	0.13	+0.4
2,587,589	-		IAI47_12240	0.13	+0.5
2,587,589	-		IAI47_12240	0.13	-0.6
2,587,589	-		IAI47_12240	0.13	-1.0
2,587,611	-		IAI47_12240	0.17	-0.9
2,587,630	+		IAI47_12240	0.20	+1.7
2,587,631	-		IAI47_12240	0.20	+1.2
2,587,631	-		IAI47_12240	0.20	-0.3
2,587,631	-		IAI47_12240	0.20	+0.6
2,587,633	+		IAI47_12240	0.21	+0.4
2,587,633	+		IAI47_12240	0.21	-2.4
2,587,633	+		IAI47_12240	0.21	-0.6
2,587,633	+		IAI47_12240	0.21	+0.2
2,587,638	+		IAI47_12240	0.22	+0.9
2,587,645	+		IAI47_12240	0.23	+1.1
2,587,646	-		IAI47_12240	0.23	+0.6
2,587,726	-		IAI47_12240	0.37	+0.7
2,587,726	-		IAI47_12240	0.37	+0.1
2,587,756	+		IAI47_12240	0.42	-0.6
2,587,756	+		IAI47_12240	0.42	+0.4
2,587,757	-		IAI47_12240	0.42	-1.6
2,587,757	-		IAI47_12240	0.42	-1.1
2,587,757	-		IAI47_12240	0.42	+1.6
2,587,757	-		IAI47_12240	0.42	+1.6
2,587,757	-		IAI47_12240	0.42	-1.1
2,587,804	+		IAI47_12240	0.51	-2.6
2,587,805	-		IAI47_12240	0.51	-0.8
2,587,826	+		IAI47_12240	0.54	+1.6
2,587,827	-		IAI47_12240	0.55	+1.4
2,587,837	+		IAI47_12240	0.56	+1.1
2,587,874	+		IAI47_12240	0.63	-0.4
2,587,874	+		IAI47_12240	0.63	+0.0
2,587,874	+		IAI47_12240	0.63	+2.4
2,587,874	+		IAI47_12240	0.63	+0.4
2,587,874	+		IAI47_12240	0.63	+1.7
2,587,874	+		IAI47_12240	0.63	+1.4
2,587,874	+		IAI47_12240	0.63	-0.1
2,587,875	-		IAI47_12240	0.63	+3.1
2,587,875	-		IAI47_12240	0.63	+0.1
2,587,875	-		IAI47_12240	0.63	-0.9
2,587,878	+		IAI47_12240	0.63	-0.2
2,587,878	+		IAI47_12240	0.63	-0.2
2,587,878	+		IAI47_12240	0.63	-0.4
2,587,879	-		IAI47_12240	0.64	+1.1
2,587,887	+		IAI47_12240	0.65	-0.9
2,587,982	+		IAI47_12240	0.81	+0.2
2,587,982	+		IAI47_12240	0.81	+0.3
2,587,982	+		IAI47_12240	0.81	+0.1
2,588,004	-		IAI47_12240	0.85	-0.5
2,588,055	-				-0.9
2,588,082	+				+0.7
2,588,086	+				-0.3
2,588,086	+				+0.1
2,588,086	+				-0.6
2,588,086	+				+1.0
2,588,086	+				-0.2
2,588,087	-				-0.9
2,588,087	-				+0.4
2,588,087	-				+0.1
2,588,087	-				+1.4
2,588,089	+				+1.7
2,588,089	+				+0.8
2,588,089	+				+0.4
2,588,089	+				+1.6
2,588,089	+				+2.9
2,588,090	-				-0.1
2,588,165	+		IAI47_12245	0.13	+0.8
2,588,165	+		IAI47_12245	0.13	+0.6
2,588,167	+		IAI47_12245	0.13	-0.8
2,588,167	+		IAI47_12245	0.13	-0.6
2,588,198	-		IAI47_12245	0.19	-1.1
2,588,237	+		IAI47_12245	0.26	-0.6
2,588,318	-		IAI47_12245	0.40	-0.6
2,588,318	-		IAI47_12245	0.40	-0.4
2,588,318	-		IAI47_12245	0.40	+0.1
2,588,318	-		IAI47_12245	0.40	+1.4
2,588,393	-		IAI47_12245	0.53	-0.3
2,588,393	-		IAI47_12245	0.53	+1.7
2,588,413	+		IAI47_12245	0.56	+1.4
2,588,413	+		IAI47_12245	0.56	+0.9
2,588,414	-		IAI47_12245	0.56	-0.6
2,588,414	-		IAI47_12245	0.56	-0.1
2,588,524	+		IAI47_12245	0.75	+0.7
2,588,525	-		IAI47_12245	0.76	-2.0
2,588,599	+		IAI47_12245	0.88	+0.1
2,588,655	+				+0.5
2,588,655	+				+0.7
2,588,655	+				-1.2
2,588,655	+				-0.6
2,588,656	-				+1.7
2,588,656	-				+0.9
2,588,656	-				+1.5
2,588,656	-				+1.8
2,588,656	-				+1.6
2,588,656	-				+0.4
2,588,706	+				-0.6
2,588,706	+				+1.3
2,588,707	-				-1.2
2,588,707	-				+0.2
2,588,728	+				+0.9
2,588,728	+				+0.9
2,588,729	-				+1.4
2,588,729	-				-0.4
2,588,729	-				-0.6
2,588,734	+				+0.4
2,588,734	+				-2.8
2,588,734	+				+0.4
2,588,734	+				+2.7
2,588,735	-				+0.6
2,588,735	-				+0.6
2,588,735	-				-0.2
2,588,738	+				-0.6
2,588,739	-				-1.2
2,588,739	-				-1.6
2,588,739	-				-2.1
2,588,758	+				+0.4
2,588,767	+				-0.6
2,588,767	+				+1.4
2,588,768	-				+1.9
2,588,768	-				+2.5
2,588,887	+		IAI47_12250	0.17	+0.0
2,588,887	+		IAI47_12250	0.17	-1.4
2,588,981	-		IAI47_12250	0.26	-0.1
2,588,981	-		IAI47_12250	0.26	+0.1
2,589,063	+		IAI47_12250	0.34	-1.0
2,589,064	-		IAI47_12250	0.34	+1.1