Strain Fitness in Pantoea sp. MT58 around IAI47_12085

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,558,319	-				-1.2
2,558,322	-				-0.2
2,558,322	-				-0.6
2,558,322	-				-0.2
2,558,322	-				+1.4
2,558,561	-		IAI47_12085	0.25	-0.6
2,558,705	-		IAI47_12085	0.39	-1.4
2,558,705	-		IAI47_12085	0.39	-0.6
2,558,705	-		IAI47_12085	0.39	+0.7
2,558,705	-		IAI47_12085	0.39	-1.0
2,558,705	-		IAI47_12085	0.39	-1.4
2,558,705	-		IAI47_12085	0.39	-0.1
2,558,705	-		IAI47_12085	0.39	-1.7
2,558,707	-		IAI47_12085	0.39	-2.2
2,558,707	-		IAI47_12085	0.39	+0.4
2,558,707	-		IAI47_12085	0.39	+0.5
2,558,707	-		IAI47_12085	0.39	-1.2
2,558,707	-		IAI47_12085	0.39	-0.2
2,558,733	-		IAI47_12085	0.42	-1.2
2,558,736	-		IAI47_12085	0.42	-1.8
2,558,736	-		IAI47_12085	0.42	-2.6
2,558,736	-		IAI47_12085	0.42	-0.2
2,558,736	-		IAI47_12085	0.42	-0.4
2,558,736	-		IAI47_12085	0.42	-1.2
2,558,736	-		IAI47_12085	0.42	-1.5
2,558,736	-		IAI47_12085	0.42	-1.2
2,558,768	-		IAI47_12085	0.45	-1.0
2,558,768	-		IAI47_12085	0.45	-0.8
2,558,786	-		IAI47_12085	0.47	-0.2
2,558,786	-		IAI47_12085	0.47	-1.6
2,558,816	-		IAI47_12085	0.50	-2.2
2,558,816	-		IAI47_12085	0.50	-1.6
2,558,907	-		IAI47_12085	0.59	-0.2
2,558,918	-		IAI47_12085	0.60	-0.6
2,558,918	-		IAI47_12085	0.60	-1.2
2,558,937	-		IAI47_12085	0.61	-2.2
2,558,985	-		IAI47_12085	0.66	+0.4
2,558,997	-		IAI47_12085	0.67	-1.6
2,559,017	-		IAI47_12085	0.69	-2.0
2,559,032	-		IAI47_12085	0.71	-0.4
2,559,365	-				-2.4
2,560,122	-				-0.2
2,560,142	+				+0.9
2,560,143	-				-1.2
2,560,169	+				+0.4
2,560,229	+				-0.4
2,560,229	+				+0.2
2,560,260	-				-1.6
2,560,260	-				+1.4
2,560,260	-				-2.2
2,560,266	+				+0.8
2,560,266	+				+0.7
2,560,266	+				-2.2
2,560,266	+				+1.1
2,560,266	+				-1.1
2,560,266	+				+1.4
2,560,266	+				+0.0
2,560,267	-				-0.1
2,560,267	-				-0.8
2,560,284	+		IAI47_12100	0.13	+0.1
2,560,284	+		IAI47_12100	0.13	-0.9
2,560,284	+		IAI47_12100	0.13	+0.0
2,560,284	+		IAI47_12100	0.13	-1.2
2,560,284	+		IAI47_12100	0.13	-0.1
2,560,284	+		IAI47_12100	0.13	+0.3
2,560,285	-		IAI47_12100	0.13	-0.1
2,560,285	-		IAI47_12100	0.13	-2.4
2,560,285	-		IAI47_12100	0.13	+1.1
2,560,285	-		IAI47_12100	0.13	-0.9
2,560,285	-		IAI47_12100	0.13	-0.4