Strain Fitness in Pantoea sp. MT58 around IAI47_12055

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,552,089	-				+0.9
2,552,089	-				+0.4
2,552,089	-				+2.4
2,552,089	-				+0.3
2,552,089	-				+0.4
2,552,089	-				+0.8
2,552,089	-				+0.4
2,552,089	-				+0.8
2,552,089	-				-1.1
2,552,089	-				+1.1
2,552,089	-				-0.6
2,552,089	-				-1.2
2,552,089	-				+0.1
2,552,089	-				+1.7
2,552,089	-				-1.2
2,552,118	-		IAI47_12050	0.11	-0.4
2,552,118	-		IAI47_12050	0.11	+1.3
2,552,124	-		IAI47_12050	0.11	-1.6
2,552,124	-		IAI47_12050	0.11	+0.6
2,552,124	-		IAI47_12050	0.11	-1.6
2,552,124	-		IAI47_12050	0.11	-2.0
2,552,124	-		IAI47_12050	0.11	+0.3
2,552,211	-		IAI47_12050	0.20	+0.5
2,552,211	-		IAI47_12050	0.20	+1.8
2,552,211	-		IAI47_12050	0.20	+0.4
2,552,215	-		IAI47_12050	0.20	+1.2
2,552,215	-		IAI47_12050	0.20	+0.9
2,552,215	-		IAI47_12050	0.20	+0.2
2,552,220	-		IAI47_12050	0.21	+0.4
2,552,220	-		IAI47_12050	0.21	+0.2
2,552,220	-		IAI47_12050	0.21	+1.0
2,552,263	-		IAI47_12050	0.25	-1.4
2,552,263	-		IAI47_12050	0.25	-0.6
2,552,265	-		IAI47_12050	0.25	+0.7
2,552,265	-		IAI47_12050	0.25	+0.5
2,552,265	-		IAI47_12050	0.25	+0.4
2,552,265	-		IAI47_12050	0.25	+0.7
2,552,265	-		IAI47_12050	0.25	-0.2
2,552,265	-		IAI47_12050	0.25	+2.0
2,552,265	-		IAI47_12050	0.25	+0.6
2,552,265	-		IAI47_12050	0.25	+2.0
2,552,265	-		IAI47_12050	0.25	-0.0
2,552,283	-		IAI47_12050	0.27	+2.8
2,552,283	-		IAI47_12050	0.27	+1.5
2,552,283	-		IAI47_12050	0.27	-0.5
2,552,283	-		IAI47_12050	0.27	-0.5
2,552,332	-		IAI47_12050	0.32	-1.4
2,552,335	-		IAI47_12050	0.32	-3.0
2,552,335	-		IAI47_12050	0.32	+0.2
2,552,410	-		IAI47_12050	0.39	-1.7
2,552,427	-		IAI47_12050	0.41	+0.4
2,552,483	-		IAI47_12050	0.47	+0.9
2,552,529	-		IAI47_12050	0.51	-1.5
2,552,535	-		IAI47_12050	0.52	+0.7
2,552,535	-		IAI47_12050	0.52	-1.6
2,552,535	-		IAI47_12050	0.52	+0.3
2,552,535	-		IAI47_12050	0.52	+0.4
2,552,535	-		IAI47_12050	0.52	+0.4
2,552,535	-		IAI47_12050	0.52	-0.5
2,552,535	-		IAI47_12050	0.52	-0.1
2,552,535	-		IAI47_12050	0.52	-0.6
2,552,535	-		IAI47_12050	0.52	+0.1
2,552,539	-		IAI47_12050	0.52	-0.3
2,552,539	-		IAI47_12050	0.52	+0.4
2,552,634	-		IAI47_12050	0.61	-0.9
2,552,634	-		IAI47_12050	0.61	-0.2
2,552,634	-		IAI47_12050	0.61	-0.2
2,552,634	-		IAI47_12050	0.61	+0.8
2,552,732	-		IAI47_12050	0.71	+0.4
2,552,744	-		IAI47_12050	0.72	-1.2
2,552,744	-		IAI47_12050	0.72	+0.4
2,552,744	-		IAI47_12050	0.72	+0.1
2,552,830	-		IAI47_12050	0.81	-1.2
2,552,902	-		IAI47_12050	0.88	+1.5
2,552,904	-		IAI47_12050	0.88	+0.5
2,552,904	-		IAI47_12050	0.88	-1.2
2,552,950	-				-1.1
2,553,040	-				+1.3
2,553,040	-				+3.0
2,553,040	-				+1.2
2,553,069	-				-0.1
2,553,103	-				-1.6
2,553,103	-				+1.0
2,553,138	-		IAI47_12055	0.14	+0.8
2,553,138	-		IAI47_12055	0.14	-0.5
2,553,138	-		IAI47_12055	0.14	-1.6
2,553,138	-		IAI47_12055	0.14	+0.9
2,553,138	-		IAI47_12055	0.14	+1.4
2,553,138	-		IAI47_12055	0.14	-1.1
2,553,142	-		IAI47_12055	0.14	+0.0
2,553,142	-		IAI47_12055	0.14	-0.6
2,553,142	-		IAI47_12055	0.14	+1.2
2,553,142	-		IAI47_12055	0.14	+0.4
2,553,142	-		IAI47_12055	0.14	-0.6
2,553,142	-		IAI47_12055	0.14	-0.1
2,553,142	-		IAI47_12055	0.14	+1.2
2,553,142	-		IAI47_12055	0.14	-0.4
2,553,142	-		IAI47_12055	0.14	-0.4
2,553,190	-		IAI47_12055	0.20	-0.9
2,553,228	-		IAI47_12055	0.25	-1.0
2,553,429	-		IAI47_12055	0.50	-0.2
2,553,467	+		IAI47_12055	0.54	-0.1
2,553,495	+		IAI47_12055	0.58	-0.2
2,553,495	+		IAI47_12055	0.58	+0.4
2,553,495	+		IAI47_12055	0.58	-0.4
2,553,495	+		IAI47_12055	0.58	+1.8
2,553,495	+		IAI47_12055	0.58	+0.4
2,553,496	-		IAI47_12055	0.58	-0.2
2,553,496	-		IAI47_12055	0.58	-1.2
2,553,496	-		IAI47_12055	0.58	+0.8
2,553,496	-		IAI47_12055	0.58	-0.2
2,553,496	-		IAI47_12055	0.58	-1.4
2,553,498	-		IAI47_12055	0.58	+0.1
2,553,498	-		IAI47_12055	0.58	-1.5
2,553,505	+		IAI47_12055	0.59	-1.6
2,553,505	+		IAI47_12055	0.59	-0.6
2,553,505	+		IAI47_12055	0.59	+0.0
2,553,505	+		IAI47_12055	0.59	-0.4
2,553,505	+		IAI47_12055	0.59	-1.2
2,553,505	+		IAI47_12055	0.59	-0.5
2,553,506	-		IAI47_12055	0.59	+0.4
2,553,506	-		IAI47_12055	0.59	-0.1
2,553,506	-		IAI47_12055	0.59	+0.8
2,553,506	-		IAI47_12055	0.59	+1.6
2,553,506	-		IAI47_12055	0.59	+1.6
2,553,506	-		IAI47_12055	0.59	-1.0
2,553,506	-		IAI47_12055	0.59	+0.9
2,553,506	-		IAI47_12055	0.59	+1.3
2,553,506	-		IAI47_12055	0.59	-0.3
2,553,569	-		IAI47_12055	0.67	-2.0
2,553,569	-		IAI47_12055	0.67	+0.6
2,553,596	+		IAI47_12055	0.70	+1.3
2,553,597	-		IAI47_12055	0.70	-0.2
2,553,628	+		IAI47_12055	0.74	-0.1
2,553,629	-		IAI47_12055	0.74	-0.1
2,553,629	-		IAI47_12055	0.74	-0.4
2,553,704	+		IAI47_12055	0.83	+0.4
2,553,704	+		IAI47_12055	0.83	-2.1
2,553,716	+		IAI47_12055	0.85	-1.2
2,553,740	+		IAI47_12055	0.88	-0.6
2,553,762	-				+1.2
2,553,765	-				-1.3
2,553,765	-				+0.8
2,553,915	+				-0.2
2,553,915	+				-1.2
2,553,915	+				-0.4
2,553,915	+				-1.0
2,553,916	-				-0.1
2,553,932	+				-0.3
2,553,933	-				-0.1
2,553,933	-				+0.0
2,553,940	-				-0.6
2,553,996	-				-0.6
2,554,031	-				-3.0
2,554,075	-		IAI47_12060	0.12	-1.6
2,554,075	-		IAI47_12060	0.12	-2.4
2,554,116	-		IAI47_12060	0.15	-1.6
2,554,258	-		IAI47_12060	0.26	-0.6
2,554,275	-		IAI47_12060	0.28	-1.2
2,554,275	-		IAI47_12060	0.28	-2.0
2,554,370	+		IAI47_12060	0.35	-1.2
2,554,371	-		IAI47_12060	0.35	-1.2
2,554,371	-		IAI47_12060	0.35	-2.0
2,554,633	-		IAI47_12060	0.57	-1.2
2,554,635	-		IAI47_12060	0.57	-2.2
2,554,644	+		IAI47_12060	0.57	-2.2
2,554,644	+		IAI47_12060	0.57	-1.0
2,554,645	-		IAI47_12060	0.57	+0.4
2,554,680	+		IAI47_12060	0.60	-2.6
2,554,681	-		IAI47_12060	0.60	-1.6
2,554,722	-		IAI47_12060	0.64	-2.2
2,554,722	-		IAI47_12060	0.64	-1.4
2,554,752	+		IAI47_12060	0.66	-2.2
2,554,815	+		IAI47_12060	0.71	-0.6
2,554,816	-		IAI47_12060	0.71	-1.8
2,554,816	-		IAI47_12060	0.71	-3.5