Strain Fitness in Pantoea sp. MT58 around IAI47_11955

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,529,875	-				-0.9
2,529,889	+				-1.4
2,529,889	+				-1.5
2,529,890	-				+0.4
2,529,890	-				+2.5
2,529,893	+				-1.5
2,529,893	+				-2.6
2,529,894	-				+0.9
2,529,894	-				+1.1
2,529,894	-				+0.4
2,529,894	-				+0.0
2,529,894	-				+0.9
2,529,894	-				+1.2
2,529,894	-				-2.2
2,529,894	-				-0.4
2,529,896	-				+0.6
2,529,896	-				+0.4
2,529,896	-				+1.7
2,529,896	-				+3.8
2,529,914	+				-0.2
2,529,914	+				+0.4
2,529,914	+				-1.4
2,529,914	+				-0.6
2,529,915	-				-0.5
2,529,915	-				-2.1
2,529,952	+				-0.6
2,529,952	+				-0.6
2,529,952	+				-0.3
2,529,952	+				-0.6
2,529,953	-				-0.6
2,529,953	-				+0.9
2,529,953	-				+0.9
2,529,953	-				-0.3
2,529,953	-				+3.5
2,530,010	+		IAI47_11950	0.15	-1.1
2,530,010	+		IAI47_11950	0.15	-1.0
2,530,011	-		IAI47_11950	0.15	-1.9
2,530,011	-		IAI47_11950	0.15	+0.4
2,530,085	+		IAI47_11950	0.24	+0.4
2,530,085	+		IAI47_11950	0.24	-2.6
2,530,085	+		IAI47_11950	0.24	-1.8
2,530,085	-		IAI47_11950	0.24	+0.4
2,530,086	-		IAI47_11950	0.24	-1.6
2,530,086	-		IAI47_11950	0.24	-3.0
2,530,086	-		IAI47_11950	0.24	-2.2
2,530,086	-		IAI47_11950	0.24	-1.6
2,530,090	+		IAI47_11950	0.24	-2.1
2,530,091	-		IAI47_11950	0.24	-1.2
2,530,115	-		IAI47_11950	0.27	-1.8
2,530,214	+		IAI47_11950	0.39	-2.6
2,530,215	-		IAI47_11950	0.39	-0.2
2,530,356	+		IAI47_11950	0.56	-1.2
2,530,419	+		IAI47_11950	0.64	-1.2
2,530,419	+		IAI47_11950	0.64	+0.4
2,530,419	+		IAI47_11950	0.64	-1.2
2,530,419	+		IAI47_11950	0.64	-1.1
2,530,419	+		IAI47_11950	0.64	-1.5
2,530,419	+		IAI47_11950	0.64	-0.5
2,530,419	+		IAI47_11950	0.64	-2.2
2,530,420	-		IAI47_11950	0.64	-3.3
2,530,440	-		IAI47_11950	0.66	-0.3
2,530,440	-		IAI47_11950	0.66	-2.0
2,530,441	+		IAI47_11950	0.66	-0.9
2,530,441	+		IAI47_11950	0.66	-1.2
2,530,441	+		IAI47_11950	0.66	-0.6
2,530,441	+		IAI47_11950	0.66	+1.9
2,530,441	+		IAI47_11950	0.66	-0.8
2,530,441	+		IAI47_11950	0.66	-1.2
2,530,441	+		IAI47_11950	0.66	-0.4
2,530,441	+		IAI47_11950	0.66	-1.1
2,530,442	-		IAI47_11950	0.66	-1.0
2,530,442	-		IAI47_11950	0.66	-2.6
2,530,442	-		IAI47_11950	0.66	-0.6
2,530,442	-		IAI47_11950	0.66	-2.6
2,530,490	+		IAI47_11950	0.72	-0.6
2,530,698	+				-1.6
2,530,715	+				-1.5
2,530,715	+				-1.6
2,530,715	+				-1.6
2,530,715	+				+0.4
2,530,715	+				-1.8
2,530,715	+				-1.8
2,530,716	-				-1.8
2,530,716	-				-2.3
2,530,787	+				-1.0
2,530,790	+				-2.0
2,530,791	-				+1.2
2,530,791	-				+0.4
2,530,791	-				-0.2
2,530,829	-				-0.3
2,530,881	-				-0.8