Strain Fitness in Pantoea sp. MT58 around IAI47_09990

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,112,154	+		IAI47_09985	0.13	+0.6
2,112,154	+		IAI47_09985	0.13	+1.6
2,112,154	+		IAI47_09985	0.13	+1.9
2,112,154	+		IAI47_09985	0.13	-0.9
2,112,154	+		IAI47_09985	0.13	+2.3
2,112,154	+		IAI47_09985	0.13	+0.1
2,112,154	+		IAI47_09985	0.13	+0.1
2,112,155	-		IAI47_09985	0.13	-1.5
2,112,155	-		IAI47_09985	0.13	+0.4
2,112,155	-		IAI47_09985	0.13	+1.3
2,112,155	-		IAI47_09985	0.13	-1.3
2,112,172	+		IAI47_09985	0.15	-1.5
2,112,172	+		IAI47_09985	0.15	-1.3
2,112,172	+		IAI47_09985	0.15	+3.3
2,112,173	-		IAI47_09985	0.15	-2.0
2,112,198	+		IAI47_09985	0.18	+0.4
2,112,199	-		IAI47_09985	0.18	-0.6
2,112,205	+		IAI47_09985	0.18	-0.3
2,112,206	-		IAI47_09985	0.18	+0.2
2,112,285	+		IAI47_09985	0.26	+0.1
2,112,285	+		IAI47_09985	0.26	-0.4
2,112,285	+		IAI47_09985	0.26	+1.9
2,112,286	-		IAI47_09985	0.26	+0.8
2,112,328	+		IAI47_09985	0.30	-1.5
2,112,329	-		IAI47_09985	0.30	-0.7
2,112,329	-		IAI47_09985	0.30	-1.3
2,112,372	+		IAI47_09985	0.34	+1.0
2,112,372	+		IAI47_09985	0.34	-0.7
2,112,372	+		IAI47_09985	0.34	-0.5
2,112,372	+		IAI47_09985	0.34	-1.0
2,112,380	-		IAI47_09985	0.35	-0.8
2,112,380	-		IAI47_09985	0.35	+0.8
2,112,409	-		IAI47_09985	0.38	+0.3
2,112,409	-		IAI47_09985	0.38	-0.7
2,112,427	+		IAI47_09985	0.40	-0.5
2,112,427	+		IAI47_09985	0.40	+0.7
2,112,427	+		IAI47_09985	0.40	+0.1
2,112,427	+		IAI47_09985	0.40	-1.3
2,112,427	+		IAI47_09985	0.40	-0.7
2,112,428	-		IAI47_09985	0.40	-0.0
2,112,428	-		IAI47_09985	0.40	-1.2
2,112,428	-		IAI47_09985	0.40	+0.3
2,112,428	-		IAI47_09985	0.40	-0.8
2,112,428	-		IAI47_09985	0.40	+0.3
2,112,428	-		IAI47_09985	0.40	-0.2
2,112,430	-		IAI47_09985	0.40	-1.0
2,112,546	-		IAI47_09985	0.51	+0.3
2,112,675	+		IAI47_09985	0.64	+1.6
2,112,679	+		IAI47_09985	0.64	-0.5
2,112,679	+		IAI47_09985	0.64	-2.2
2,112,680	-		IAI47_09985	0.64	+1.0
2,112,680	-		IAI47_09985	0.64	-1.1
2,112,716	+		IAI47_09985	0.68	+0.5
2,112,828	+		IAI47_09985	0.79	-1.0
2,112,828	+		IAI47_09985	0.79	+0.8
2,112,829	-		IAI47_09985	0.79	+2.7
2,112,835	-		IAI47_09985	0.79	-0.5
2,112,849	+		IAI47_09985	0.81	-1.4
2,112,861	+		IAI47_09985	0.82	-1.9
2,112,862	-		IAI47_09985	0.82	-0.2
2,112,878	-		IAI47_09985	0.84	-0.3
2,112,889	+		IAI47_09985	0.85	+0.3
2,112,954	+				+0.7
2,112,955	-				+0.3
2,112,955	-				-0.0
2,112,955	-				-0.0
2,112,955	-				-0.3
2,112,955	-				-0.6
2,112,968	+				-2.3
2,112,990	+				+0.9
2,112,991	-				+1.0
2,113,021	-				+1.6
2,113,045	+				+1.5
2,113,046	-				-0.5
2,113,054	+				-1.3
2,113,087	-				-0.4
2,113,087	-				+1.1
2,113,087	-				+0.2
2,113,087	-				-2.0
2,113,216	+		IAI47_09990	0.15	-1.2
2,113,217	-		IAI47_09990	0.15	+0.3
2,113,272	+		IAI47_09990	0.21	+0.1
2,113,272	+		IAI47_09990	0.21	+0.8
2,113,272	+		IAI47_09990	0.21	-0.9
2,113,272	+		IAI47_09990	0.21	-0.7
2,113,273	-		IAI47_09990	0.21	-0.7
2,113,273	-		IAI47_09990	0.21	-0.7
2,113,370	-		IAI47_09990	0.33	+0.5
2,113,370	-		IAI47_09990	0.33	+0.7
2,113,370	-		IAI47_09990	0.33	+0.2
2,113,381	+		IAI47_09990	0.34	+1.5
2,113,382	-		IAI47_09990	0.34	+0.2
2,113,421	-		IAI47_09990	0.39	-0.7
2,113,421	-		IAI47_09990	0.39	-2.3
2,113,477	+		IAI47_09990	0.45	-0.1
2,113,615	+		IAI47_09990	0.61	+0.6
2,113,616	-		IAI47_09990	0.61	+0.9
2,113,705	+		IAI47_09990	0.72	+0.3
2,113,705	+		IAI47_09990	0.72	-2.3
2,113,706	-		IAI47_09990	0.72	-1.1
2,113,706	-		IAI47_09990	0.72	-0.9
2,113,706	-		IAI47_09990	0.72	-0.1
2,113,706	-		IAI47_09990	0.72	+0.8
2,113,843	+		IAI47_09990	0.88	-0.1
2,113,843	+		IAI47_09990	0.88	+0.4
2,113,844	-		IAI47_09990	0.88	+1.3
2,113,845	+		IAI47_09990	0.88	-0.9
2,113,845	+		IAI47_09990	0.88	-1.5
2,113,846	-		IAI47_09990	0.88	-2.7
2,113,907	-				-0.1
2,113,907	-				-0.7
2,113,907	-				-0.6
2,113,914	+				+0.0
2,113,914	+				+1.5
2,113,914	+				+1.3
2,113,914	+				+1.1
2,113,948	+				+0.8
2,113,948	+				+1.1
2,113,948	+				-1.0
2,113,949	-				+0.1
2,113,949	-				-0.4
2,113,949	-				+1.0
2,113,952	+				-0.5
2,113,953	-				-2.0
2,113,953	-				+0.1
2,113,953	-				+1.3
2,114,056	-		IAI47_09995	0.12	-0.7
2,114,162	+		IAI47_09995	0.25	-1.5
2,114,162	+		IAI47_09995	0.25	+1.3
2,114,163	-		IAI47_09995	0.25	-0.8
2,114,166	+		IAI47_09995	0.25	+1.3
2,114,166	+		IAI47_09995	0.25	-0.3
2,114,166	+		IAI47_09995	0.25	-0.7
2,114,166	+		IAI47_09995	0.25	+0.9
2,114,166	+		IAI47_09995	0.25	-0.0
2,114,166	+		IAI47_09995	0.25	-1.8
2,114,166	+		IAI47_09995	0.25	+0.1
2,114,167	-		IAI47_09995	0.25	+0.5
2,114,167	-		IAI47_09995	0.25	+0.3
2,114,167	-		IAI47_09995	0.25	-0.8
2,114,167	-		IAI47_09995	0.25	-1.0
2,114,170	-		IAI47_09995	0.26	-0.1
2,114,170	-		IAI47_09995	0.26	-0.4
2,114,275	+		IAI47_09995	0.38	+0.3
2,114,276	-		IAI47_09995	0.38	-1.1
2,114,316	-		IAI47_09995	0.43	-0.9
2,114,393	+		IAI47_09995	0.52	+1.2
2,114,393	+		IAI47_09995	0.52	-0.7
2,114,393	+		IAI47_09995	0.52	-1.7
2,114,465	-		IAI47_09995	0.60	-2.3
2,114,488	-		IAI47_09995	0.63	-0.1
2,114,488	-		IAI47_09995	0.63	-1.7
2,114,576	+		IAI47_09995	0.73	+0.6
2,114,577	-		IAI47_09995	0.73	+0.6
2,114,579	+		IAI47_09995	0.73	+0.3
2,114,579	+		IAI47_09995	0.73	-0.8
2,114,580	-		IAI47_09995	0.73	-0.1
2,114,580	-		IAI47_09995	0.73	+0.1
2,114,580	-		IAI47_09995	0.73	-3.3
2,114,619	+		IAI47_09995	0.78	-1.0
2,114,632	-		IAI47_09995	0.79	-0.4
2,114,661	+		IAI47_09995	0.83	-1.5
2,114,662	-		IAI47_09995	0.83	+1.9
2,114,662	-		IAI47_09995	0.83	-0.8
2,114,662	-		IAI47_09995	0.83	-0.2
2,114,662	-		IAI47_09995	0.83	+0.9
2,114,744	-				+1.4
2,114,769	+				-0.7
2,114,809	+				-1.8
2,114,809	+				-1.7
2,114,809	+				-0.9
2,114,810	-				+0.3
2,114,810	-				-0.8
2,114,844	+				-3.0
2,114,850	-				-0.8
2,114,850	-				+0.3
2,114,852	+				-2.1
2,114,852	+				-1.1
2,114,853	-				-0.1
2,114,853	-				-1.2
2,114,853	-				-0.7
2,114,853	-				+1.6
2,114,855	+				-0.0
2,114,856	-				-0.5
2,114,856	-				+0.8
2,114,879	-				+0.3
2,114,879	-				-1.1
2,114,879	-				-0.2
2,114,898	+				-1.1
2,114,912	+		IAI47_10000	0.11	-1.1
2,114,912	+		IAI47_10000	0.11	-0.5
2,114,913	-		IAI47_10000	0.11	-1.3
2,114,913	-		IAI47_10000	0.11	-2.7
2,114,916	+		IAI47_10000	0.11	+0.9
2,114,916	+		IAI47_10000	0.11	+0.9
2,114,916	+		IAI47_10000	0.11	+0.3
2,114,916	+		IAI47_10000	0.11	-0.3