Strain Fitness in Pantoea sp. MT58 around IAI47_08895

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_08890 and IAI47_08895 are separated by 19 nucleotidesIAI47_08895 and IAI47_08900 overlap by 8 nucleotides IAI47_08890: IAI47_08890 - D-amino acid dehydrogenase, at 1,877,331 to 1,878,632 _08890 IAI47_08895: IAI47_08895 - catabolic alanine racemase DadX, at 1,878,652 to 1,879,722 _08895 IAI47_08900: IAI47_08900 - multidrug effflux MFS transporter, at 1,879,715 to 1,880,908 _08900 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1877.657 kb on - strand, within IAI47_08890at 1877.657 kb on - strand, within IAI47_08890at 1877.670 kb on + strand, within IAI47_08890at 1877.718 kb on + strand, within IAI47_08890at 1877.719 kb on - strand, within IAI47_08890at 1877.719 kb on - strand, within IAI47_08890at 1877.743 kb on + strand, within IAI47_08890at 1877.743 kb on + strand, within IAI47_08890at 1877.743 kb on + strand, within IAI47_08890at 1877.744 kb on - strand, within IAI47_08890at 1877.744 kb on - strand, within IAI47_08890at 1877.744 kb on - strand, within IAI47_08890at 1877.744 kb on - strand, within IAI47_08890at 1877.789 kb on + strand, within IAI47_08890at 1877.789 kb on + strand, within IAI47_08890at 1877.789 kb on + strand, within IAI47_08890at 1877.790 kb on - strand, within IAI47_08890at 1877.790 kb on - strand, within IAI47_08890at 1877.790 kb on - strand, within IAI47_08890at 1877.790 kb on - strand, within IAI47_08890at 1877.820 kb on + strand, within IAI47_08890at 1877.820 kb on + strand, within IAI47_08890at 1877.830 kb on + strand, within IAI47_08890at 1877.831 kb on - strand, within IAI47_08890at 1877.882 kb on + strand, within IAI47_08890at 1877.882 kb on + strand, within IAI47_08890at 1877.883 kb on - strand, within IAI47_08890at 1877.883 kb on - strand, within IAI47_08890at 1877.883 kb on - strand, within IAI47_08890at 1877.883 kb on - strand, within IAI47_08890at 1877.900 kb on - strand, within IAI47_08890at 1877.990 kb on + strand, within IAI47_08890at 1878.029 kb on + strand, within IAI47_08890at 1878.030 kb on - strand, within IAI47_08890at 1878.033 kb on + strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.034 kb on - strand, within IAI47_08890at 1878.071 kb on + strand, within IAI47_08890at 1878.071 kb on + strand, within IAI47_08890at 1878.071 kb on + strand, within IAI47_08890at 1878.071 kb on + strand, within IAI47_08890at 1878.072 kb on - strand, within IAI47_08890at 1878.072 kb on - strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.075 kb on + strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.076 kb on - strand, within IAI47_08890at 1878.096 kb on + strand, within IAI47_08890at 1878.097 kb on - strand, within IAI47_08890at 1878.129 kb on - strand, within IAI47_08890at 1878.146 kb on - strand, within IAI47_08890at 1878.153 kb on + strand, within IAI47_08890at 1878.154 kb on - strand, within IAI47_08890at 1878.173 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.219 kb on + strand, within IAI47_08890at 1878.220 kb on - strand, within IAI47_08890at 1878.220 kb on - strand, within IAI47_08890at 1878.220 kb on - strand, within IAI47_08890at 1878.220 kb on - strand, within IAI47_08890at 1878.251 kb on + strand, within IAI47_08890at 1878.251 kb on + strand, within IAI47_08890at 1878.251 kb on + strand, within IAI47_08890at 1878.252 kb on - strand, within IAI47_08890at 1878.252 kb on - strand, within IAI47_08890at 1878.287 kb on + strand, within IAI47_08890at 1878.345 kb on + strand, within IAI47_08890at 1878.443 kb on + strand, within IAI47_08890at 1878.470 kb on + strand, within IAI47_08890at 1878.573 kb on + strandat 1878.573 kb on + strandat 1878.573 kb on + strandat 1878.573 kb on + strandat 1878.573 kb on + strandat 1878.578 kb on - strandat 1878.611 kb on + strandat 1878.630 kb on + strandat 1879.717 kb on - strandat 1879.717 kb on - strandat 1879.769 kb on - strandat 1879.842 kb on - strand, within IAI47_08900at 1879.876 kb on + strand, within IAI47_08900at 1879.876 kb on + strand, within IAI47_08900at 1879.876 kb on + strand, within IAI47_08900at 1879.876 kb on + strand, within IAI47_08900at 1879.877 kb on - strand, within IAI47_08900at 1879.877 kb on - strand, within IAI47_08900at 1879.932 kb on + strand, within IAI47_08900at 1879.932 kb on + strand, within IAI47_08900at 1879.932 kb on + strand, within IAI47_08900at 1879.933 kb on - strand, within IAI47_08900at 1879.933 kb on - strand, within IAI47_08900at 1879.933 kb on - strand, within IAI47_08900at 1879.950 kb on - strand, within IAI47_08900at 1879.955 kb on - strand, within IAI47_08900at 1879.955 kb on - strand, within IAI47_08900at 1879.955 kb on - strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.995 kb on + strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1879.996 kb on - strand, within IAI47_08900at 1880.030 kb on + strand, within IAI47_08900at 1880.031 kb on - strand, within IAI47_08900at 1880.051 kb on + strand, within IAI47_08900at 1880.126 kb on - strand, within IAI47_08900at 1880.126 kb on - strand, within IAI47_08900at 1880.126 kb on - strand, within IAI47_08900at 1880.149 kb on + strand, within IAI47_08900at 1880.150 kb on - strand, within IAI47_08900at 1880.150 kb on - strand, within IAI47_08900at 1880.150 kb on - strand, within IAI47_08900at 1880.150 kb on - strand, within IAI47_08900at 1880.216 kb on + strand, within IAI47_08900at 1880.216 kb on + strand, within IAI47_08900at 1880.216 kb on + strand, within IAI47_08900at 1880.217 kb on - strand, within IAI47_08900at 1880.217 kb on - strand, within IAI47_08900at 1880.217 kb on - strand, within IAI47_08900at 1880.217 kb on - strand, within IAI47_08900at 1880.217 kb on - strand, within IAI47_08900at 1880.219 kb on + strand, within IAI47_08900at 1880.219 kb on + strand, within IAI47_08900at 1880.219 kb on + strand, within IAI47_08900at 1880.219 kb on + strand, within IAI47_08900at 1880.219 kb on + strand, within IAI47_08900at 1880.219 kb on + strand, within IAI47_08900at 1880.220 kb on - strand, within IAI47_08900at 1880.220 kb on - strand, within IAI47_08900at 1880.220 kb on - strand, within IAI47_08900at 1880.241 kb on + strand, within IAI47_08900at 1880.241 kb on + strand, within IAI47_08900at 1880.241 kb on + strand, within IAI47_08900at 1880.242 kb on - strand, within IAI47_08900at 1880.242 kb on - strand, within IAI47_08900at 1880.242 kb on - strand, within IAI47_08900at 1880.242 kb on - strand, within IAI47_08900at 1880.320 kb on - strand, within IAI47_08900at 1880.320 kb on - strand, within IAI47_08900at 1880.354 kb on - strand, within IAI47_08900at 1880.354 kb on - strand, within IAI47_08900at 1880.383 kb on + strand, within IAI47_08900at 1880.383 kb on + strand, within IAI47_08900at 1880.383 kb on + strand, within IAI47_08900at 1880.384 kb on - strand, within IAI47_08900at 1880.384 kb on - strand, within IAI47_08900at 1880.399 kb on - strand, within IAI47_08900at 1880.413 kb on - strand, within IAI47_08900at 1880.474 kb on + strand, within IAI47_08900at 1880.523 kb on + strand, within IAI47_08900at 1880.570 kb on - strand, within IAI47_08900at 1880.587 kb on + strand, within IAI47_08900at 1880.587 kb on + strand, within IAI47_08900at 1880.588 kb on - strand, within IAI47_08900at 1880.588 kb on - strand, within IAI47_08900at 1880.660 kb on - strand, within IAI47_08900at 1880.660 kb on - strand, within IAI47_08900at 1880.677 kb on - strand, within IAI47_08900at 1880.677 kb on - strand, within IAI47_08900at 1880.677 kb on - strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.715 kb on + strand, within IAI47_08900at 1880.716 kb on - strand, within IAI47_08900at 1880.716 kb on - strand, within IAI47_08900at 1880.716 kb on - strand, within IAI47_08900

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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1,877,657 - IAI47_08890 0.25 -0.6
1,877,657 - IAI47_08890 0.25 +0.6
1,877,670 + IAI47_08890 0.26 -1.1
1,877,718 + IAI47_08890 0.30 +1.6
1,877,719 - IAI47_08890 0.30 +0.9
1,877,719 - IAI47_08890 0.30 +1.1
1,877,743 + IAI47_08890 0.32 -0.9
1,877,743 + IAI47_08890 0.32 +0.4
1,877,743 + IAI47_08890 0.32 +1.9
1,877,744 - IAI47_08890 0.32 -0.2
1,877,744 - IAI47_08890 0.32 -1.0
1,877,744 - IAI47_08890 0.32 -0.6
1,877,744 - IAI47_08890 0.32 +0.8
1,877,789 + IAI47_08890 0.35 +0.4
1,877,789 + IAI47_08890 0.35 -2.1
1,877,789 + IAI47_08890 0.35 -0.9
1,877,790 - IAI47_08890 0.35 +0.4
1,877,790 - IAI47_08890 0.35 +0.4
1,877,790 - IAI47_08890 0.35 +0.2
1,877,790 - IAI47_08890 0.35 +0.0
1,877,820 + IAI47_08890 0.38 -1.1
1,877,820 + IAI47_08890 0.38 -0.1
1,877,830 + IAI47_08890 0.38 +0.7
1,877,831 - IAI47_08890 0.38 -0.8
1,877,882 + IAI47_08890 0.42 -0.6
1,877,882 + IAI47_08890 0.42 +0.0
1,877,883 - IAI47_08890 0.42 -0.5
1,877,883 - IAI47_08890 0.42 -0.8
1,877,883 - IAI47_08890 0.42 -0.3
1,877,883 - IAI47_08890 0.42 +1.8
1,877,900 - IAI47_08890 0.44 +0.4
1,877,990 + IAI47_08890 0.51 -0.1
1,878,029 + IAI47_08890 0.54 -0.6
1,878,030 - IAI47_08890 0.54 +0.8
1,878,033 + IAI47_08890 0.54 -1.6
1,878,034 - IAI47_08890 0.54 +0.4
1,878,034 - IAI47_08890 0.54 -1.2
1,878,034 - IAI47_08890 0.54 -0.6
1,878,034 - IAI47_08890 0.54 +0.4
1,878,034 - IAI47_08890 0.54 +1.2
1,878,034 - IAI47_08890 0.54 -1.6
1,878,034 - IAI47_08890 0.54 -0.0
1,878,034 - IAI47_08890 0.54 -0.4
1,878,071 + IAI47_08890 0.57 +0.1
1,878,071 + IAI47_08890 0.57 +0.4
1,878,071 + IAI47_08890 0.57 +1.9
1,878,071 + IAI47_08890 0.57 +0.6
1,878,072 - IAI47_08890 0.57 +1.4
1,878,072 - IAI47_08890 0.57 -0.2
1,878,075 + IAI47_08890 0.57 +0.5
1,878,075 + IAI47_08890 0.57 +0.8
1,878,075 + IAI47_08890 0.57 -0.5
1,878,075 + IAI47_08890 0.57 -0.4
1,878,075 + IAI47_08890 0.57 +1.9
1,878,075 + IAI47_08890 0.57 +1.7
1,878,075 + IAI47_08890 0.57 -0.6
1,878,075 + IAI47_08890 0.57 -2.8
1,878,075 + IAI47_08890 0.57 -0.6
1,878,075 + IAI47_08890 0.57 -1.0
1,878,075 + IAI47_08890 0.57 -1.0
1,878,076 - IAI47_08890 0.57 +0.3
1,878,076 - IAI47_08890 0.57 +0.4
1,878,076 - IAI47_08890 0.57 -2.8
1,878,076 - IAI47_08890 0.57 +0.4
1,878,076 - IAI47_08890 0.57 +1.1
1,878,076 - IAI47_08890 0.57 -0.9
1,878,076 - IAI47_08890 0.57 -1.1
1,878,076 - IAI47_08890 0.57 -0.6
1,878,076 - IAI47_08890 0.57 +1.0
1,878,096 + IAI47_08890 0.59 -1.0
1,878,097 - IAI47_08890 0.59 -2.8
1,878,129 - IAI47_08890 0.61 +0.5
1,878,146 - IAI47_08890 0.63 -0.4
1,878,153 + IAI47_08890 0.63 +2.7
1,878,154 - IAI47_08890 0.63 -1.3
1,878,173 + IAI47_08890 0.65 -2.2
1,878,219 + IAI47_08890 0.68 -0.5
1,878,219 + IAI47_08890 0.68 +0.0
1,878,219 + IAI47_08890 0.68 -0.6
1,878,219 + IAI47_08890 0.68 -2.2
1,878,219 + IAI47_08890 0.68 -0.9
1,878,219 + IAI47_08890 0.68 +0.4
1,878,219 + IAI47_08890 0.68 -0.9
1,878,220 - IAI47_08890 0.68 -1.6
1,878,220 - IAI47_08890 0.68 +0.0
1,878,220 - IAI47_08890 0.68 -0.6
1,878,220 - IAI47_08890 0.68 -0.9
1,878,251 + IAI47_08890 0.71 -3.3
1,878,251 + IAI47_08890 0.71 +0.4
1,878,251 + IAI47_08890 0.71 -1.2
1,878,252 - IAI47_08890 0.71 +0.4
1,878,252 - IAI47_08890 0.71 -0.9
1,878,287 + IAI47_08890 0.73 +0.8
1,878,345 + IAI47_08890 0.78 -1.1
1,878,443 + IAI47_08890 0.85 +1.4
1,878,470 + IAI47_08890 0.87 -0.1
1,878,573 + -0.3
1,878,573 + -2.0
1,878,573 + +0.4
1,878,573 + +1.0
1,878,573 + -0.9
1,878,578 - -2.2
1,878,611 + -0.4
1,878,630 + +1.4
1,879,717 - +0.0
1,879,717 - +0.7
1,879,769 - +0.2
1,879,842 - IAI47_08900 0.11 -0.2
1,879,876 + IAI47_08900 0.13 -0.6
1,879,876 + IAI47_08900 0.13 +0.0
1,879,876 + IAI47_08900 0.13 -0.4
1,879,876 + IAI47_08900 0.13 -2.8
1,879,877 - IAI47_08900 0.14 -0.5
1,879,877 - IAI47_08900 0.14 -0.2
1,879,932 + IAI47_08900 0.18 +0.5
1,879,932 + IAI47_08900 0.18 +1.5
1,879,932 + IAI47_08900 0.18 -1.6
1,879,933 - IAI47_08900 0.18 +0.6
1,879,933 - IAI47_08900 0.18 -0.4
1,879,933 - IAI47_08900 0.18 -1.2
1,879,950 - IAI47_08900 0.20 -0.4
1,879,955 - IAI47_08900 0.20 +0.7
1,879,955 - IAI47_08900 0.20 -0.6
1,879,955 - IAI47_08900 0.20 -1.2
1,879,995 + IAI47_08900 0.23 +0.4
1,879,995 + IAI47_08900 0.23 +1.6
1,879,995 + IAI47_08900 0.23 -1.1
1,879,995 + IAI47_08900 0.23 -1.1
1,879,995 + IAI47_08900 0.23 +0.4
1,879,995 + IAI47_08900 0.23 -0.8
1,879,995 + IAI47_08900 0.23 +0.1
1,879,995 + IAI47_08900 0.23 +1.1
1,879,995 + IAI47_08900 0.23 -0.1
1,879,996 - IAI47_08900 0.24 +2.2
1,879,996 - IAI47_08900 0.24 +0.4
1,879,996 - IAI47_08900 0.24 +0.6
1,879,996 - IAI47_08900 0.24 +0.4
1,879,996 - IAI47_08900 0.24 +0.2
1,879,996 - IAI47_08900 0.24 +1.0
1,879,996 - IAI47_08900 0.24 -0.6
1,879,996 - IAI47_08900 0.24 -0.4
1,879,996 - IAI47_08900 0.24 +0.5
1,880,030 + IAI47_08900 0.26 +0.5
1,880,031 - IAI47_08900 0.26 +0.6
1,880,051 + IAI47_08900 0.28 -0.9
1,880,126 - IAI47_08900 0.34 -0.6
1,880,126 - IAI47_08900 0.34 -1.1
1,880,126 - IAI47_08900 0.34 +0.7
1,880,149 + IAI47_08900 0.36 -0.2
1,880,150 - IAI47_08900 0.36 +1.1
1,880,150 - IAI47_08900 0.36 -2.6
1,880,150 - IAI47_08900 0.36 -0.2
1,880,150 - IAI47_08900 0.36 +0.6
1,880,216 + IAI47_08900 0.42 -0.5
1,880,216 + IAI47_08900 0.42 +0.4
1,880,216 + IAI47_08900 0.42 -0.2
1,880,217 - IAI47_08900 0.42 +0.4
1,880,217 - IAI47_08900 0.42 -0.6
1,880,217 - IAI47_08900 0.42 -0.5
1,880,217 - IAI47_08900 0.42 -0.8
1,880,217 - IAI47_08900 0.42 +0.4
1,880,219 + IAI47_08900 0.42 +0.8
1,880,219 + IAI47_08900 0.42 -1.0
1,880,219 + IAI47_08900 0.42 +0.1
1,880,219 + IAI47_08900 0.42 +1.9
1,880,219 + IAI47_08900 0.42 +0.1
1,880,219 + IAI47_08900 0.42 -1.2
1,880,220 - IAI47_08900 0.42 -0.6
1,880,220 - IAI47_08900 0.42 +1.1
1,880,220 - IAI47_08900 0.42 +0.0
1,880,241 + IAI47_08900 0.44 -1.5
1,880,241 + IAI47_08900 0.44 -2.5
1,880,241 + IAI47_08900 0.44 -0.4
1,880,242 - IAI47_08900 0.44 +0.1
1,880,242 - IAI47_08900 0.44 +0.5
1,880,242 - IAI47_08900 0.44 +0.4
1,880,242 - IAI47_08900 0.44 -0.6
1,880,320 - IAI47_08900 0.51 +1.4
1,880,320 - IAI47_08900 0.51 +0.4
1,880,354 - IAI47_08900 0.54 -1.6
1,880,354 - IAI47_08900 0.54 +0.2
1,880,383 + IAI47_08900 0.56 -0.6
1,880,383 + IAI47_08900 0.56 +1.4
1,880,383 + IAI47_08900 0.56 +0.1
1,880,384 - IAI47_08900 0.56 -1.9
1,880,384 - IAI47_08900 0.56 +0.1
1,880,399 - IAI47_08900 0.57 -0.4
1,880,413 - IAI47_08900 0.58 -0.5
1,880,474 + IAI47_08900 0.64 +1.9
1,880,523 + IAI47_08900 0.68 +0.4
1,880,570 - IAI47_08900 0.72 +0.8
1,880,587 + IAI47_08900 0.73 -0.9
1,880,587 + IAI47_08900 0.73 -0.6
1,880,588 - IAI47_08900 0.73 -1.3
1,880,588 - IAI47_08900 0.73 -0.4
1,880,660 - IAI47_08900 0.79 +0.9
1,880,660 - IAI47_08900 0.79 -1.8
1,880,677 - IAI47_08900 0.81 +0.0
1,880,677 - IAI47_08900 0.81 +0.5
1,880,677 - IAI47_08900 0.81 +0.4
1,880,715 + IAI47_08900 0.84 +1.8
1,880,715 + IAI47_08900 0.84 -0.2
1,880,715 + IAI47_08900 0.84 +0.7
1,880,715 + IAI47_08900 0.84 -1.4
1,880,715 + IAI47_08900 0.84 +0.4
1,880,715 + IAI47_08900 0.84 -1.0
1,880,715 + IAI47_08900 0.84 +0.6
1,880,716 - IAI47_08900 0.84 -0.6
1,880,716 - IAI47_08900 0.84 +0.4
1,880,716 - IAI47_08900 0.84 +0.5

Or see this region's nucleotide sequence